| United
States Patent Application | 20070027129
|
| Kind
Code | A1
|
|
Tuszynski; Jack A.
; et al.
| February 1, 2007
|
Water-soluble compound
Abstract
A water-soluble magnetic anti-mitotic compound with a
water-solubility of at least 100 micrograms per milliliter, a molecular
weight of at least 150 grams per mole, a mitotic index factor of at
least 10 percent, a positive magnetic susceptibility of at least
1,000.times.10.sup.-6 cgs, and a magnetic moment of at least 0.5 bohr
magnetrons, wherein said compound is comprised of at least 7 carbon
atoms and at least one inorganic atom with a positive magnetic
susceptibility of at least 200.times.10.sup.-6 cgs.
| Inventors: |
Tuszynski; Jack A.; (Edmonton,
CA)
; Greenwald; Howard J.; (East Rochester, NY)
; Curry; Stephen H.; (Rochester, NY)
; Goss; Kendrick; (Brighton, MA)
|
| Correspondence
Name and Address: | BUCHANAN, INGERSOLL & ROONEY PC
POST OFFICE BOX 1404
ALEXANDRIA
VA
22313-1404
US
|
| Serial
No.:
| 064247 |
| Series Code: | 11
|
| Filed: | February 23, 2005 |
| U.S. Current Class: | 514/185; 514/449; 549/206; 549/510 |
| U.S. Class at
Publication: | 514/185;
514/449; 549/510; 549/206 |
| Intern'l Class: | A61K 31/555 20060101 A61K031/555; C07F 15/02
20070101 C07F015/02 |
Claims
1. A composition of matter comprised of a substrate
comprised of a taxane, a magnetic moiety, and means for covalently
binding said magnetic moiety to said taxane, thus producing a magnetic
taxane.
2. The composition of matter as recited in claim 1, wherein
said substrate has a mitotic index factor of at least about 20 percent.
3. The composition of matter as recited in claim 2, wherein
said substrate has a mitotic index factor of at least about 30 percent.
4. The composition of matter as recited in claim 3, wherein
said substrate has a mitotic index factor of at least about 50 percent.
5. The composition of matter as recited in claim 2, wherein
said taxane is selected from the group consisting of a paclitaxel, a
docetaxel, 10-desacetyl paclitaxel, and combinations thereof.
6. The composition of matter as recited in claim 1, wherein
said magnetic moiety is paramagnetic.
7. The composition of matter as recited in claim 6, wherein
said magnetic moiety is comprised of a nitroxide.
8. The composition of matter as recited in claim 1, wherein
said magnetic moiety is comprised of a metallic atom.
9. The composition of matter as recited in claim 8, wherein
said magnetic moiety is ferromagnetic.
10. The composition of matter as recited in claim 9, wherein
said metallic atom has a positive magnetic susceptibility of at least
2.times.10.sup.-4 cgs.
11. The composition of matter as recited in claim 10, wherein
said metallic atom is iron.
12. The composition of matter as recited in claim 11, wherein
said iron is iron (III).
13. The composition of matter as recited in claim 10, wherein
said substrate has a positive magnetic susceptibility of at least
1.times.10.sup.-3 cgs.
14. The composition of matter as recited in claim 13, wherein
said magnetic moiety is a siderophore.
15. The composition of matter as recited in claim 14, wherein
said siderophore is a hydroxamic acid.
16. The composition of matter as recited in claim 15, wherein
said hydroxamic acid is a ferrichrome.
17. The composition of matter as recited in claim 15, wherein
said hydroxamic acid is a ferricrocin.
18. The composition of matter as recited in claim 15, wherein
said hydroxamic acid is a ferrioxamine.
19. A composition of matter comprised of a substrate comprised
of a taxane, a magnetic moiety, and means for covalently binding said
magnetic moiety to said taxane, thus producing a magnetic taxane
wherein a. said magnetic moiety is comprised of a iron atom with a
positive magnetic susceptibility of at least 2.times.10.sup.-4 cgs, b.
said substrate has appositive magnetic susceptibility of at least
1.times.10.sup.-3 cgs, and c. said magnetic moiety is further comprised
of a ferrichrome.
20. The composition of matter as recited in claim 19, wherein
said substrate has a mitotic index factor of at least about 20 percent.
21. The composition of matter as recited in claim 20, wherein
said substrate has a mitotic index factor of at least about 30 percent.
22. The composition of matter as recited in claim 21, wherein
said substrate has a mitotic index factor of at least about 50 percent.
23. A composition of matter comprised of a substrate comprised
of a biologically active substrate and a magnetic moiety wherein: a.
said biologically active substrate is operatively configured to bind to
a binding domain of a tubulin, wherein said tubulin is part of a
microtubule, b. said binding of said biologically active substrate to
said binding domain alters the tread milling behavior of said
microtubule such that said microtubule is stabilized, c. said magnetic
moiety is covalently bound to said biologically active substrate.
24. The composition of matter as recited in claim 23, wherein
said binding domain is a vinca domain.
25. The composition of matter as recited in claim 24, wherein
said biologically active substrate is selected from the group
consisting of vinblastine, vincristine, vinorelbine, vinfluine, a
cryptophycin, a halichondrins, a dolastatin, a hemiasterin, and
combinations thereof.
26. The composition of matter as recited in claim 23, wherein
said binding domain is a colchicines domain.
27. The composition of matter as recited in claim 26, wherein
said biologically active substrate is selected from the group
consisting of colchicine, a combretastatin, a
methoxybenzene-sulphonamide, and combinations thereof.
28. The composition of matter as recited in claim 23, wherein
said binding domain is a taxane domain.
29. The composition of matter as recited in claim 28, wherein
said biologically active substrate is selected from the group
consisting of a taxane, paclitaxel, docetaxel, an epothilone, and
combinations thereof.
Description
CROSS-REFERENCE TO RELATED PATENT APPLICATIONS
[0001] This application is a continuation of applicants'
co-pending patent application U.S. Ser. No. 10/923,615, filed on Aug.
20, 2004 which claims priority from United States provisional patent
application U.S. Ser. No. 60/516,134, filed on Oct. 31, 2003. The
entire disclosure of each of these patent applications is hereby
incorporated by reference into this specification.
[0002] This application is a continuation-in-part of
applicants' U.S. patent application Ser. No. 10/808,618 (filed on Mar.
24, 2004), of applicants' U.S. patent application Ser. No. 10/867,517
(filed on Jun. 14, 2004), and of applicants' U.S. patent application
Ser. No. 10/878,905 (filed on Jun. 28, 2004). The entire disclosure of
each of these patent applications is hereby incorporated by reference
into this specification.
INCORPORATION BY REFERENCE OF MATERIAL SUBMITTED ON A COMPACT
DISC
[0003] Reference is hereby made to a Sequence Listing, a Table,
and/or a Computer Program Listing appendix that was submitted on
compact disc. The entire content of this compact disc is hereby
incorporated by reference into this specification.
FIELD OF THE INVENTION
[0004] A water-soluble magnetic anti-mitotic compound with a
water-solubility of at least 100 micrograms per milliliter, a molecular
weight of at least 150 grams per mole, a mitotic index factor of at
least 10 percent, a positive magnetic susceptibility of at least
1,000.times.10.sup.-6 cgs, and a magnetic moment of at least 0.5 bohr
magnetrons, wherein said compound is comprised of at least 7 carbon
atoms and at least one inorganic atom with a positive magnetic
susceptibility of at least 200.times.10.sup.-6 cgs.
BACKGROUND OF THE INVENTION
[0005] Paclitaxel is a complex diterpenoid that is widely used
as an anti-mitotic agent; it consists of a bulky, fused ring system and
an extended side chain that is required for its activity. See, e.g.,
page 112 of Gunda I. Georg's "Taxane Anticancer Agents: Basic Science
and Current Status," ACS Symposium Series 583 (American Chemical
Society, Washington, D.C., 1995).
[0006] The aqueous solubility of paclitaxel is relatively low.
Thus, as is disclosed at page 112 of such Georg text, estimates of
paclitaxel solubility vary widely, ranging from about 30 micrograms per
milliliter and about 7 micrograms per milliliter to less than 0.7
micrograms per milliter.
[0007] The molecular weight of paclitaxel is in excess of 700;
this relatively high molecular weight is one factor that, according to
the well-known "rule of 5," contributes to paclitaxel's poor water
solubility.
[0008] The "rule of 5" was set forth by Christopher A. Lipinski
et al. in an article entitled "Experimental and computational
approaches to estimate solubility and permeability in drug discovery
and development settings," Adv. Drug Delivery Rev., 1997, 23(1-3),
3-25. In this article, it was disclosed that: "In the USAN set we found
that the sum of Ns and Os in the molecular formula was greater than 10
in 12% of the compounds. Eleven percent of compounds had a MWT of over
500 . . . . The `rule of 5` states that: poor absorption of permeation
is more likely where: A. There are more than 5H-bond donors (expressed
as the sum of OHs and NHs); B. The MWT is over 500; C. The LogP is over
500 . . . ; D. There are more than 10H-bond acceptors (expressed as the
sum of Ns and Os)."
[0009] The Lipinksi "rule of 5" has also erroneously been
referred to as the "Pfizer rule of 5," as is illustrated by U.S. Pat.
No. 6,675,136, the entire disclosure of which is hereby incorporated by
reference into this specification. As is disclosed in such patent, "To
further illustrate the versatility of the present technique, we also
introduce the concept of `anchor` objects. Anchor objects are molecules
situated at the corners of a region of the drug space that is defined
by Pfizer's `rule of 5`. This rule has been empirically derived by a
computer analysis of known drugs, as described by Christopher A. Pfizer
and co-workers in Adv. Drug Delivery Rev., vol. 23, pp. 3-25 (1997).
The "rule of 5" is focused on drug permeability and oral absorption . .
. . According to Pfizer's "rule of 5", LIPO and HBDON are between 0 and
5, HBACC is between 0 and 10, and M.W. has a maximum of 500."
[0010] The problems that high molecular weight compounds have
with poor water solubility are discussed in U.S. Pat. No. 6,667,048 of
Karel J. Lambert et al., which discloses an "emulsion vehicle for a
poorly soluble drug." In the "background of the invention" section of
this patent, it is disclosed that: "Hundreds of medically useful
compounds are discovered every year, but clinical use of these drugs is
possible only if a drug delivery vehicle is developed to transport them
to their therapeutic target in the human body. This problem is
prticularly critical for drugs requiring intraveneous injection in
order to reach their therapeutic target or dosage but which are water
insoluble or poorly water insoluble. For such hydrophobic compounds,
direct injection may be impossible or highly dangerous, and can result
in hemolysis, phlebitis, hypersensitivity, organ failure and/or death.
Such compounds are termed by pharmacists `lipophilic,` `hydrophobic,`
or in their most difficult form, `amphiphobic` . . . . A few examples
of therapeutic substances in these categories are ibuprofen, diazepam,
grisefulvin, cyclosporin, cortisone, proleukin, cortisone, proleukin,
etoposide and paclitaxel . . . ."
[0011] As is also disclosed in U.S. Pat. No. 6,667,048,
"Administration of chemotherapuetic or anti-cancer agents is
particularly problematic. Low solubility anti-cancer agents are
difficult to solubulize and supply at therapeutically useful levels. On
the other hand, water-soluble anti-cancer agents are generally taken up
by both cancer and non-cancer cells thereby exhibiting non-specificity
. . . . Efforts to improve water-solubility and comfort of
administration of such agents have not solved, and may have worsened,
the two fundamental problems of cancer chemotherapy: 1) non-specific
toxicity, and 2) rapid clearance from the bloodstream by non-specific
mechanisms. In the case of cytotoxins, which form the majority of
currently available chemotherapies, these two problems are clearly
related. Whenever the therapeutic is taken up by noncancerous cells, a
diminished amount of the drug remains available to treat the cancer,
and more importantly, the normal cell ingesting the drug is killed."
[0012] As is also disclosed in U.S. Pat. No. 6,667,048, "The
chemotherapeutic must be present throughout the affected tissue(s) at
high concentration for a sustained period of time so that it may be
taken up by the cancer cells, but not at so high a concentration that
normal cells are injured beyond repair. Obviously, water-soluble
molecules can be administered in this way, but only by slow, continuous
infusion and monitoring, aspects which entail great difficulty, expense
and inconvenience."
[0013] It does not appear that the prior art has provided a
water-soluble anti-mitotic agent that is capable of solving the
problems discussed in U.S. Pat. No. 6,667,048. It is an object of this
invention to provide such an agent. In particular, and in one
embodiment, it is an object of this invention to provide a magnetic
anti-mitotic composition that can be directed to be more toxic to
cancer cells than normal cells. Furthermore, and in another embodiment,
it is another object of this invention to provide a delivery system
that will provide a chemotherapeutic agent at a high concentration for
a sustained period of time but not at such a high concentration that a
substantial number of normal cells are injured beyond repair.
SUMMARY OF THE INVENTION
[0014] In accordance with one embodiment of this invention,
there is provided a water-soluble magnetic anti-mitotic compound with a
water-solubility of at least 100 micrograms per milliliter, a molecular
weight of at least 150 grams per mole, a mitotic index factor of at
least 10 percent, a positive magnetic susceptibility of at least
1,000.times.10.sup.-6 cgs, and a magnetic moment of at least 0.5 bohr
magnetrons, wherein said compound is comprised of at least 7 carbon
atoms and at least one inorganic atom with a positive magnetic
susceptibility of at least 200.times.10.sup.-6 cgs.
[0015] In accordance with yet another embodiment of this
invention, there is provided a compound with molecular weight of at
least about 550, a water solubility of at least about 10 micrograms per
milliliter, a pKa dissociation constant of from about 1 to about 15,
and a partition coefficient of from about 1.0 to about 50.
BRIEF DESCRIPTION OF THE DRAWINGS
[0016] The invention will be described with reference to the
specification and the enclosed drawings, in which like numerals refer
to like elements, and wherein:
[0017] FIG. 1 is a schematic illustration of one preferred
implantable assembly of the invention;
[0018] FIG. 2 is a schematic illustration of a flow meter that
may be used in conjunction with the implantable assembly of claim 1;
[0019] FIG. 3 is a flow diagram of one preferred process of the
invention;
[0020] FIG. 4 is a flow diagram of another preferred process of
the invention; and
[0021] FIG. 5 is a flow diagram of yet another preferred
process of the invention.
DESCRIPTION OF THE PREFERRED EMBODIMENTS
[0022] The magnetic anti-mitotic compound of this invention is
particularly well-adapted to bind either to tubulin isotypes and/or
microtubules comprised of such isotypes and/or various proteins that
are involved in microtubule dynamics. In the first part of this
specification, applicants will discuss the preparation of a database of
tubulin isotopes. In the second part of this specification, applicants
will discuss certain preferred, magnetic compounds that, in one
embodiment, target such tubulin isotypes and/or the microtubules they
make up.
A Process for Preparing a Tubulin Isotype Database
[0023] Tubulin is a component of microtubules. At the molecular
level tubulin's roles are highly complex. For example, microtubules
undergo cycles of rapid growth and disassembly in a process known as
"dynamic instability" that appears to be critical for microtubule
function. In one embodiment, the magnetic anti-mitotic compounds of
this invention are capable of disrupting and/or modifying such process
of "dynamic instability," either by interacting with one or more
tubulin isotypes, and/or one or more proteins involved in the dynamics
of microtubule assembly and/or disassembly, and/or the microtubules
themselves.
[0024] Both the alpha and the beta forms of tubulin consist of
a series of isotypes, differing in amino acid sequence, each one
encoded by a different gene. See, e.g., an article by Richard F.
Luduena on "The multiple forms of tublin: different gene products and
covalent modifications," Int. Rev. Cytol. 178-107-275 (1998). Reference
also may be had, e.g., to U.S. Pat. No. 6,306,615 (detection method for
monitoring beta-tubulin isotype specific modification); the entire
disclosure of this United States patent is hereby incorporated by
reference into this specification.
[0025] An interesting discussion of tubulin isotypes is also
presented in published United States patent application 2004/0121351,
the entire disclosure of which is hereby incorporated by reference into
this specification. As is disclosed in this published patent
application, "Microtubules are essential to the eucaryotic cell due as
they are involved in many processes and functions such as, e.g., being
components of the cytoskeleton, of the centrioles and ciliums and in
the formation of spindle fibres during mitosis. The constituents of
microtubules are heterodimers consisting of one .alpha.-tubulin
molecule and one .beta.-tubulin molecule. These two related
self-associating 50 kDa proteins are encoded by a multigen family. The
various members of this multigen family are dispersed all over the
human genome. Both .alpha.-tubulin and .beta.-tubulin are most likely
to originate from a common ancestor as their amino acid sequence shows
a homology of up to 50%. In man there are at least 15 genes or
pseudogenes for .beta.-tubulin."
[0026] As is also disclosed in published United States patent
application 2004/0121351, "The conservation of structure and regulatory
functions among the .beta.-tubulin genes in three vertebrate species
(chicken, mouse and human) allowed the identification of and
categorization into six major classes of beta-tubulin polypeptide
isotypes on the basis of their variable carboxyterminal ends. The
specific, highly variable 15 carboxyterminal amino acids are very
conserved among the various species. Beta-tubulins of categories I, II,
and IV are closely related differing only 2-4% in contrast to
categories III, V and VI which differ in 8-16% of amino acid positions
[Sullivan K. F., 1988, Ann. Rev. Cell Biol. 4: 687-716] . . . the
expression pattern is very similar between the various species as can
be taken from the following table [Sullivan K. F., 1988, Ann. Rev. Cell
Biol. 4: 687-716] which comprises the respective human members of each
class: 1 isotype member expression pattern class I HM 40 ubiquitous
class II H .beta. 9 mostly in the brain class III H .beta. 4
exclusively in the brain class IVa H .beta. 5 exclusively in the brain
class IVb H .beta. 2 ubiquitous . . . . "The C terminal end of the
beta-tubulins starting from amino acid 430 is regarded as highly
variable between the various classes. Additionally, the members of the
same class seem to be very conserved between the various species. As
tubulin molecules are involved in many processes and form part of many
structures in the eucaryotic cell, they are possible targets for
pharmaceutically active compounds. As tubulin is more particularly the
main structural component of the microtubules it may act as point of
attack for anticancer drugs such as vinblastin, colchicin, estramustin
and taxol which interfere with microtubule function. The mode of action
is such that cytostatic agents such as the ones mentioned above, bind
to the carboxyterminal end the .beta.-tubulin which upon such binding
undergoes a conformational change. For example, Kavallaris et al.
[Kavallaris et al. 1997, J. Clin. Invest. 100: 1282-1293] reported a
change in the expression of specific .beta.-tubulin isotypes (class I,
II, III, and IVa) in taxol resistant epithelial ovarian tumor. It was
concluded that these tubulins are involved in the formation of the
taxol resistence. Also a high expression of class III .beta.-tubulins
was found in some forms of lung cancer suggesting that this isotype may
be used as a diagnostic marker."
[0027] The function of certain tubulins in Taxol resistance was
also discussed in U.S. Pat. No. 6,362,321, the entire disclosure of
which is hereby incorporated by reference into this specification. As
is disclosed in this patent, "Taxol is a natural product derived from
the bark of Taxus brevafolio (Pacific yew). Taxol inhibits microtubule
depolymerization during mitosis and results in subsequent cell death.
Taxol displays a broad spectrum of tumorcidal activity including
against breast, ovary and lung cancer (McGuire et al., 1996, N. Engid.
J. Med. 334:1-6; and Johnson et al., 1996, J. Clin. Ocol.
14:2054-2060). While taxol is often effective in treatment of these
malignancies, it is usually not curative because of eventual
development of taxol resistance. Cellular resistance to taxol may
include mechanisms such as enhanced expression of P-glycoprotein and
alterations in tubulin structure through gene mutations in the .beta.
chain or changes in the ratio of tubulin isomers within the polymerized
microtubule (Wahl et al., 1996, Nature Medicine 2:72-79; Horwitz et
al., 1993, Natl. Cancer Inst. 15:55-61; Haber et al., 1995, J. Biol.
Chem. 270:31269-31275; and Giannakakou et al., 1997, J. Biol. Chem.
272:17118-17125) . . . " In one embodiment of this invention, the
magnetetic anti-mitotic compound of this invention is used in
conjunction with paclitaxel to provide an improved anti-cancer
composition. Without wishing to be bound to any particular theory,
applicants believe that their anti-mitotic compound targets a tubulin
isotype that is responsible for the drug resistance to paclitaxel.
[0028] The increased presence of certain tubulin isotypes
associated with certain types of cancers was noted in an article by
Tien Yeh et al., "The B.sub.II Isotype of Tubulin is Present in the
Cell Nuclei of a Variety of Cancers," Cell Motility and the
Cytoskeleton 57:96-106 (2004). Constructs of these B.sub.II isotypes
and applicants' magnetic anti-mitotic compound comprise one embodiment
of the present invention.
[0029] The Yeh et al. article discloses that both alpha-tubulin
and beta-tubulin consist of a series of isotypes differieng in amino
acid sequence, each one encoded by a different gene; and it refers to a
1998 article by Richard F. Luduena entitled "The multiple forms of
tubulin: different gene products and covalent modifications," Int. Rev.
Cytol 178:207-275. The Yeh et al. article also disclosed that the
B.sub.II Isotype of tubulin is present in the nuclei of many tumors,
stating that "Three quarters (75%) of the tumors we examined contained
nuclear the B.sub.II (Table I)." The authors of the Yeh et al. article
suggest that (at page 104) " . . . it would be interesting to explore
the possibility of using nuclear B.sub.II as a chemotherapeutic
target."
[0030] It thus appears that many isotypes of tubulin might be
"chemotherapeutic targets" such as, e.g., the "nuclear B.sub.II"
disclosed in the Yeh et al. article, or the " . . . specific
.beta.-tubulin isotypes (class I, II, III, and IVa) . . . " described
in the Kavallaris et al. article (Kavallaris et al. 1997, J. Clin.
Invest. 100: 1282-1293) and discussed in published United States patent
application 2004/0121351. It also appears that many isotypes of tubulin
are " . . . targets for pharmaceutically active compounds . . . ." The
process of this invention may be used to identify these tubulin isotype
targets, to model such targets, and to determine what therapeutic
agents interact with such targets; and it may also be used to assist in
the construction of anti-mitotic agents bound to such isotypes.
[0031] As is discussed in published United States patent
application US2002/0106705 (the entire disclosure of which is hereby
incorporated by reference into this specification), the therapeutic
agent that interacts with the tubulin isotype target may be, e.g., a
".beta.-tubulin modifying agent." One such agent is described in
US2002/0106705 as being " . . . an agent that has the ability to
specifically react with an amino acid residue of .beta.-tubulin,
preferably a cysteine, more preferably the cysteine residue at position
239 of a .beta.-tubulin isotype such as .beta.1- .beta.2- or
.beta.4-tubulin and antigenic fragments thereof comprising the residue,
preferably cysteine 239. The .beta.-tubulin modifying agent of the
invention can be, e.g., any sulfhydryl or disulfide modifying agent
known to those of skill in the art that has the ability to react with
the sulfur group on a cysteine residue, preferably cysteine residue 239
of .beta.-tubulin isotype. Preferably, the .beta.-tubulin modifying
agents are substituted benzene compounds,
pentafluorobenzenesulfonamides, arylsulfonanilide phosphates, and
derivatives, analogs, and substituted compounds thereof (see, e.g.,
U.S. Pat. No. 5,880,151; PCT 97/02926; PCT 97/12720; PCT 98/16781; PCT
99/13759; and PCT 99/16032, herein incorporated by reference; see also
Pierce Catalogue, 1999/2000, and Means, Chemical Modification of
Proteins). In one embodiment, the agent is
2-fluoro-1-methoxy-4-pentafluorophenylsulfonamidobenzene (compound 1;
FIG. 1C). Modification of a .beta.-tubulin isotype at an amino acid
residue, e.g., cysteine 239, by an agent can be tested by treating a
.alpha.-tubulin peptide, described herein, with the putative agent,
followed by, e.g., elemental analysis for a halogen, e.g., fluorine,
reverse phase HPLC, NMR, or sequencing and HPLC mass spectrometry.
Optionally compound 1 described herein can be used as a positive
control. Similarly, an .alpha.-tubulin modifying agent refers to an
agent having the ability to specifically modify an amino acid residue
of an .alpha.-tubulin." In one embodiment of this invention, prior art
beta-tubulin targeting agents are modified by making them water-soluble
and/or magnetic in accordance with the process of this invention.
Identification of the Tubulin Isotype Targets
[0032] The tubulin isotypes that are potential chemotherapeutic
targets are preferably those isotypes that are present in a higher
concentration in diseased biological organisms than in normal
biological organisms. They may be identified by, e.g., standard
analytical techniques.
[0033] By way of illustration, and not limitation, an analysis
may be done regarding the extent to which, if any, a beta-tubulin
isotype, e.g., is present in tumors. As is described in the Yeh et al.
paper cited elsewhere in this specification, one may study a variety of
tumors by "standard immunohistochemical techniques" to determine the
extent to which one or more tubulin isotypes if present in the tumors.
Yeh et al. state that: "Tumors were randomly selected from the San
Antonio Cancer Institute Tumor Bank to represent a variety of tumor
types, grades, and stages. Benign tissues adjacent to the tumor were
examined when possible. In addition to malignant tumors, selected
benign lesions, such as meningiomas, and tumors of low malignant
potential, such as giant cell tumors of bone, were also examined. All
tissues were formalin-fixed and paraffin-embedded . . . . Standard
immunohistochemical techniques were utilized [Hsu et al., 1981]. The
monoclonal antibody to the (BII isotype of tubulin (JDR.3B8) was at an
initial concentration of 2 mg/mL and diluted 1:2,000, for a final
concentration of 1 .mu.g/mL. No antigen retrieval step was used because
the antigen was easily accessible for immunohistochemical staining.
Slides were incubated at room temperature with the primary antibody for
1 h. The sections were then exposed to a secondary biotinylated rabbit
anti-mouse antibody (DAKO, cat no. E354, 1:100), then Streptavidin
horseradish peroxidase was applied, followed by diaminobenzidine and
OsO.sub.4. Slides were counter-stained with methyl green. A positive
skin control and negative controls (minus antibody) were run with each
batch of tumors . . . . Slides were visualized using an Olympus BX-40
microscope, equipped with PlanFluorite objectives. The pattern and
location of cells staining with the antibody to B11-tubulin were
recorded. Intensity and proportion of cells stained were recorded in a
semi-quantitative manner, as previously described [Allred et al., 1998]
. . . ."
Preparation of a Database of Tubulin Isotypes
[0034] In one embodiment of the process of this invention, a
database of tubulin isotypes is prepared. In this section of the
specification, excerpts from a paper that was prepared by one of the
applicants is presented. The paper in question is entitled "Homology
Modeling of Tubulin Isotypes and its Consequences for the Biophysical
Properties of Tubulin and Microtubules." One of the authors of this
paper is applicant Jack A. Tuszynski; and such paper will hereinafter
be referred to as the "Tuszynski paper."
[0035] As is disclosed in the introductory portion of the
Tuszynski et al. paper, "Microtubules, cylindrical organelles found in
all eukaryotes, are critically involved in a variety of cellular
processes including motility, transport and mitosis." As authority for
this proposition, the paper cites a text by J. S. Hymans et al.
entitled "Microtubules" (Wiley-Liss, New York, N.Y., 1994).
[0036] The Tuszynski paper also discloses that: "Their
component protein, tubulin, is composed of two polypeptides of related
sequence, designated .alpha. and .beta.. In addition to .alpha.- and
.beta.-tubulin, many microtubules in cells require the related
.gamma.-tubulin for nucleation." As authority for this proposition,
there are cited articles by H. P. Erickson (".gamma.-tubulin
nucleation, template or protofilament?," Nature Cell Biology 2:E93-E96,
200) and by R. F. Luduena ("The multiple forms of tubulin: different
gene products and covalent modifications," Int. Rev. Cytol.
178:207-275, 1998).
[0037] The Tuszynski paper also discloses that: "Two other
tubulins, designated .delta. and .epsilon., are widespread, . . .
although their roles are still uncertain . . . models utilizing them
have been proposed." As authority for this statement, the paper cites
works by S. T. Vaughan et al. ("New tubulins in protozoal parasites,"
Curr. Biol. 10:R258-R259, 2000) and Y. F. Inclan et al. ("Structural
models for the self-assembly and microtubule interactions of . . .
tubulin," Journal of Cell Science 114:413-422, 2001).
[0038] The Tuszynski paper also discloses that: "At least three
of these tubulins, namely, .alpha., .beta., and .gamma., exist in many
organisms as families of closely related isotypes. An enigmatic feature
of tubulin is its heterogeneity. Not only can .alpha. and
.beta.-tubulin exist as multiple isotypes in many organisms, but the
protein can also undergo various post-translational modifications, such
as phosphorylation, acetylation, detyrosination, and
polyglutamylation." As authority for this statement, the paper cites a
work by A. Banergee, "Coordination of posttranslational modifications
of bovine brain. .alpha. tubulin, polyglycylation of delta2 tubulin,"
Journal of Biological Chemistry 277:46140-46144, 2002).
[0039] The Tuszynski paper also discloses that "At the
molecular level tubulin's roles are highly complex and are related to
the structural variations observed." As authority for this proposition,
the article cites a work by K. L. Richards et al., "Structure-function
relationships in yeast tubulins," Molecular Biology of the Cell
11:1887-1903, 2000.
[0040] The Tuszynski paper also states that " . . .
microtubules undergo cycles of rapid growth and disassembly in a
process known as dynamic instability that appears to be critical for
microtubule function, especially in mitosis. A guanosine triphosphate
(GTP) tubulin hydrolyzes bound GTP to GDP; the kinetics of this process
in beta-tubulin is critical in regulating dynamic instability by
affecting the loss of a so-called `cap` that stabilizes the microtubule
structure." As authority for this statement, the article cites a work
by T. J. Mitchison et al., "Dynamic instability of microtubule growth,"
Nature 312:237-242, 1984.
[0041] The Tuszynski paper also discloses that "In addition to
forming microtubules, tubulin interacts with a large number of
associated proteins. Some of these, such as tektin, may play structural
roles; others, the so-called microtubule-associated proteins (MAPs)
such as tau or MAP2, may stabilize the microtubules, stimulate
microtubule assembly and mediate interactions with other proteins.
Still others, such as kinesin and dynein, are motor proteins that move
cargoes, e.g., vesicles, along microtubules." As authority for these
statements, the article refers to works by M. Kikkawa et al.
("Switch-based mechanisms of kinesin motors," Nature 411:439-445, 2001)
and Z. Wang et al. ("The C-terminus of tubulin increases cytoplasmic
dynein and kinesin processity," Biophysical Journal 78:1955-1964,
2000).
[0042] As is also disclosed in the Tuszynski et al. paper, "The
precise molecular basis of the properties of tubulin is still not well
understood, in part because tubulin's highly flexible conformation . .
. makes it difficult to crystallize this region." As authority for this
statement, the article cites a work by O. Keskin et al., "Relating
molecular flexibility to function: a case study of tubulin," Biphysical
Journal 83:663-680, 2002.
[0043] The Tuszynski paper also discloses that: "In a major
advance in the field, the three-dimensional structure of bovine brain
tubulin has been determined by electron crystallography resulting in
atomic structures available in the The Protein Data Bank (Berman et al.
[2000] as entries 1TUB Nogales et al. (1998) and 1JFF Lowe et al.
(2000)." The Berman et al. reference is to an article by H. M. Berman
et al. on "The protein data bank," Nucleic Acids Research 28:235-242,
2000. The Nogales et al. reference was to an article by E. Nogales et
al. on the "Structure of the alpha/beta tubulin dimer by electron
crystallography," Nature 393: 199-203, 1998. The Lowe et al. reference
is to an article by J. Lowe et al. on the "Refined structure of
alpha/beta-tubulin at 3.5 angstrom resolution," Journal of Molecular
Biology 313:1045-1057 (2001).
[0044] The Tuszynski paper also discloses that "Once the three
dimensional structure of a protein is known it is possible to use
homology modeling to predict the structures of related forms of the
protein with some degree of accuracy. We have applied these techniques
to a series of 300 different tubulins, representing .alpha.- and
.beta.-tubulins from animals, plants, fungi and protists, as well as
several .gamma.-, .delta.- and .epsilon.-tubulins." It should be noted
that such "homology modeling" is frequently referred to in the patent
literature. Reference may be had, e.g., to U.S. Pat. Nos. 5,316,935;
5,486,802; 5,686,255; 5,738,998; 6,027,720; 6,080,549; 6,197,589;
6,356,845; 6,433,158; 6,451,986; 6,468,770; 6,548,477; 6,654,644;
6,654,667; 6,627,746; and the like. The entire disclosure of each of
these United States patents is hereby incorporated by reference into
this specification.
[0045] The Tuszynski paper also discloses that: "For all of the
resulting tubulin structures, we have been able to estimate the
magnitudes and orientations of their dipole moments, charge
distributions and surface to volume ratios. The magnitudes and
orientations of the tubulin dimers' dipose moments appear to play
significant roles in microtubule assembly and stability."
[0046] The Tuszynski paper also discloses that "In addition, we
have been able to generate plausible conformations for the C-terminal
regions. Notably, the C-termini of alpha- and beta-tubulin were not
resolved in the original crystallographic structures of tubulin due to
their flexibility and possibly sample inhomgeneity." As support for
this statement, the article cited a work by E. Nogales et al.,
"Structure of the alpha/beta tubulin dimmer by electron
crystallography," Nature 393:199-203, 1998.
[0047] The Tuszynski paper also discloses that "The importance
of these regions is highlighted by the fact that they are the site of
most of tubulin's post-translational modifications, that they bind to
MAPs and that differences among tubulin isotypes cluster here."
[0048] The Tuszynski paper discusses the materials and methods
used to construct the tublin isotype database. In one embodiment of the
process used in the Tuszynksi paper, the " . . . abundance of various
homologous isotypes of tubulin, called alpha and beta (with additional
indices labeling the isotypes) is correlated with the specific
locations of the cells in which they are found. We have used the known
amino-acid sequences in which the isotypes differ, in connection with
the data of the Downing group for the known three-dimensional structure
obtained by electron crystallography of bovine brain tubulin by Nogales
et al., and applied these in molecular dynamics simulations in order to
study the resulting differences in the biophysical and biochemical
properties such as: volume, surface are, electric field distributions,
binding sites, conformational changes, etc. Our structural experiments
on purified abII, abIII and abIV tubulin dimers have produced strong
evidence that their conformations differ. Using the Molecular
Simulation International (MSI) Homology Software Module, we have
constructed three-dimensional models of the abI, abII, abIII, abIV,
abV, abVI and abVII dimers. This Downing structure was fitted to the
amino acid sequences for porcine brain a- and b-tubulin, which, for the
beta subunit, is largely bII. To generate models of the various dimers,
the Homology software module is used to align the sequences of the
various isotypes to the sequence of the Nogales et al structure, and
the coordinates of the Nogales structure are mapped to the aligned beta
isotype. Then energy minimization and molecular dynamic simulation is
being used on the approximate result to refine a structural model of
each of these dimers. Similar homology modeling approaches have been
used to predict the structure of one protein from that of a closely
related protein; such models have also been extensively used to design
useful drugs. In constructing computational 3D models from all of the
available sequences of tubulin isotypes we have exploited the high
degree of sequence and structure conservation that is observed within
tubulin isotypes and between the alpha and beta subunits by using
software such as the experimental Modeller and tubulin crystallographic
data as structural templates to produce 3D models containing chosen
amino acid sequences."
[0049] In one embodiment of the Tuszynski process, the
"Swiss-Prot database" was referred to. As is also disclosed in the
Tuszynski paper, "As an initial step the Swiss-Prot database Release
40.2 of 8 Nov. 2002 . . . (available at http://www.expasy.org/sprot/)
was searched for tubulin amino acid sequences." The article referred to
a work by B. Boekmann et al. ("The SWISS-PROT protein knowledge base
and its supplement TrEMBL," Nucl. Acids. Res. 31:365-370, 2003) for a
reference relating to such "Swiss-Prot database." It should be noted
that many United States patents refer to such Swiss-Prot database.
Reference may be had, e.g., to U.S. Pat. Nos. 6,183,968; 6,207,397;
6,303,319; 6,372,897; 6,373,971 (method and apparatus for pattern
discovery in protein sequences); U.S. Pat. Nos. 6,387,641; 6,631,322
(methods for using functional site descriptors and predicting protein
function), U.S. Pat. No. 6,466,874 (Rosetta stone method for detecting
protein function and protein-protein interactions from genome
sequences), U.S. Pat. No. 6,470,277 (techniques for facilitating
identification of candidate genes), U.S. Pat. No. 6,564,151 (assigning
protein functions by comparative genome analysis protein phylogenetic
profiles), and the like. The entire disclosure of each of these United
States patents is hereby incorporated by reference into this
specification.
[0050] Referring again to the Tuszynksi paper, it is disclosed
that: "A search using the keyword `tubulin` was manually filtered to
separate actual tubulin sequences from those of other tubulin related
proteins. This provided some 290 sequences, representing a wide range
of species. Of these 27 are annotated as being fragmentary, leaving 263
complete tubulin monomer sequences. Of particular interest were the 15
human sequences obtained . . . ."
[0051] Referring again to the Tuszynksi paper, it is disclosed
that: "Table 1 summarizes all of the tubulin sequences used in this
study for quick reference and convenience. The table names the source
organism, and for each . . . gives the name used in the databank. It is
important to relate the biochemical data encapsulated by the amino acid
sequence to the biologically relevant information presented in Table 1
in the form of the organism from which a given tubulin is derived."
[0052] In referring to such "Table 1," the Tuszynski paper
states that: "Table 1. Tubulin sequences used in this study. The table
names the source organism, and for each . . . gives the name used in
the databank." TABLE-US-00001 File Name Name of Organism SEQ. NO.
TBA1_ANEPH Anemia phyllitidis SEQ ID NO. 1 TBA1_ARATH Arabidopsis
thaliana SEQ ID NO. 2 TBA1_CHICK Gallus gallus SEQ ID NO. 3 TBA1_CHLRE
Chlamydomonas reinhardtii SEQ ID NO. 4 TBA1_DROME Drosophila
melanogaster SEQ ID NO. 5 TBA1_ELEIN Eleusine indica SEQ ID NO. 6
TBA1_EMENI Emericella nidulans SEQ ID NO. 7 TBA1_ENTHI Entamoeba
histolytica SEQ ID NO. 8 TBA1_HOMAM Homarus americanus SEQ ID NO. 9
TBA1_HORVU Hordeum vulgare SEQ ID NO. 10 TBA1_HUMAN Homo sapiens SEQ ID
NO. 11 TBA1_MAIZE Zea mays SEQ ID NO. 12 TBA1_MOUSE Mus musculus SEQ ID
NO. 13 TBA1_NEUCR Neurospora crassa SEQ ID NO. 14 TBA1_ORYSA Oryza
sativa SEQ ID NO. 15 TBA1_PARLI Paracentrotus lividus SEQ ID NO. 16
TBA1_PEA Pisum sativus SEQ ID NO. 17 TBA1_PELFA Pelvetia fastigiata SEQ
ID NO. 18 TBA1_PNECA Pneumocystis carinii SEQ ID NO. 19 TBA1_SCHPO
Schizosaccharomyces pombe SEQ ID NO. 20 TBA1_STYLE Stylonichia lemnae
SEQ ID NO. 21 TBA1_VOLCA Volvox carteri SEQ ID NO. 22 TBA1_YEAST
Saccharomyces cerevisiae SEQ ID NO. 23 TBA2_ANEPH Anemia phyllitidis
SEQ ID NO. 24 TBA2_ARATH Arabidopsis thaliana SEQ ID NO. 25 TBA2_CAEEL
Caenorhabditis elegans SEQ ID NO. 26 TBA2_CHICK Gallus gallus SEQ ID
NO. 27 TBA2_CHLRE Chlamydomonas reinhardtii SEQ ID NO. 28 TBA2_DROME
Drosophila melanogaster SEQ ID NO. 29 TBA2_ELEIN Eleusine indica SEQ ID
NO. 30 TBA2_EM EN I Emericella nidulans SEQ ID NO. 31 TBA2_HOMAM
Homarus americanus SEQ ID NO. 32 TBA2_HORVU Hordeum vulgare SEQ ID NO.
33 TBA2_HUMAN Homo sapiens SEQ ID NO. 34 TBA2_MAIZE Zea mays SEQ ID NO.
35 TBA2_MOUSE Mus musculus SEQ ID NO. 36 TBA2_NEUCR Neurospora crassa
SEQ ID NO. 37 TBA2PATVU Patella vulgata SEQ ID NO. 38 TBA2_PELFA
Pelvetia fastigiata SEQ ID NO. 39 TBA2_SCHPO Schizosaccharomyces pombe
SEQ ID NO. 40 TBA2_STYLE Stylonichia lemnae SEQ ID NO. 41 TBA3_ARATH
Arabidopsis thaliana SEQ ID NO. 42 TBA3_CHICK Gallus gallus SEQ ID NO.
43 TBA3_DROME Drosophila melanogaster SEQ ID NO. 44 TBA3_ELEIN Eleusine
indica SEQ ID NO. 45 TBA3_HOMAM Homarus americanus SEQ ID NO. 46
TBA3_HORVU Hordeum vulgare SEQ ID NO. 47 TBA3_MAIZE Zea mays SEQ ID NO.
48 TBA3_MOUS E Mus musculus SEQ ID NO. 49 TBA3_YEAST Saccharomyces
cerevisiae SEQ ID NO. 50 TBA4_CHICK Gallus gallus SEQ ID NO. 51
TBA4_DROME Drosophila melanogaster SEQ ID NO. 52 TBA4_HUMAN Homo
sapiens SEQ ID NO. 53 TBA4_MAIZE Zea mays SEQ ID NO. 54 TBA5_CHICK
Gallus gallus SEQ ID NO. 55 TBA5_MAIZE Zea mays SEQ ID NO. 56
TBA6_ARATH Arabidopsis thaliana SEQ ID NO. 57 TBA6_HUMAN Homo sapiens
SEQ ID NO. 58 TBA6_MAIZE Zea mays SEQ ID NO. 59 TBA6_MOUS E Mus
musculus SEQ ID NO. 60 TBA8_CAEEL Caenorhabditis elegans SEQ ID NO. 61
TBA8_CHICK Gallus gallus SEQ ID NO. 62 TBA8_HUMAN Homo sapiens SEQ ID
NO. 63 TBA8_MOUS E Mus musculus SEQ ID NO. 64 TBA_AJECA Ajellomyces
capsulatum SEQ ID NO. 65 TBAA_PN ECA Pneumocystis carinii SEQ ID NO. 66
TBAA_SCHCO Schizophyllum commune SEQ ID NO. 67 TBA_AVESA Avena sativa
SEQ ID NO. 68 TBA_BLEJA Blephansma japonicus SEQ ID NO. 69 TBA_BOMMO
Bombyx mori SEQ ID NO. 70 TBAB_SCHCO Schizophyllum commune SEQ ID NO.
71 TBA_CANAL Candida albicans SEQ ID NO. 72 TBA_CHLVU Chlorella
vulgaris SEQ ID NO. 73 TBA_DICDI Dictyostelium discoideum SEQ ID NO. 74
TBAD_PHYPO Physarum polycephalum SEQ ID NO. 75 TBAE_PHYPO Physarum
polycephalum SEQ ID NO. 76 TBA_EUGGR Euglena gracilis SEQ ID NO. 77
TBA_EU POC Euplotes octocarinatus SEQ ID NO. 78 TBA_EU PVA Euplotes
vannus SEQ ID NO. 79 TBA_HAECO Haemonchus contortus SEQ ID NO. 80
TBA_LEPSE Leptomonas seymouri SEQ ID NO. 81 TBA_LYTPI Lytechinus pictus
SEQ ID NO. 82 TBA_MYCGR Mycosphaerella graminicola SEQ ID NO. 83
TBA_NAEGR Naegleria gruberi SEQ ID NO. 84 TBA_NOTVI Notophtalamus
viridescens SEQ ID NO. 85 TBAN_PHYPO Physarum polycephalum SEQ ID NO.
86 TBA_OCTDO Octopus Dofleini SEQ ID NO. 87 TBA_OCTVU Lytechinus pictus
SEQ ID NO. 88 TBA_ONCKE Onchorhynchus keta SEQ ID NO. 89 TBA_OXYGR
Oxytricha granulifera SEQ ID NO. 90 TBA_PICAB Picia abies SEQ ID NO. 91
TBA_PIG Sus scrofa SEQ ID NO. 92 TBA_PLAFK Plasmodium falciparum SEQ ID
NO. 93 TBA_PLAYO Plasmodium berghei yoelii SEQ ID NO. 94 TBA_PRUDU
Prunus dulcis SEQ ID NO. 95 TBA_SORMA Sordaria macrospora SEQ ID NO. 96
TBA_TETPY Tetrahymena pynformis SEQ ID NO. 97 TBA_TETTH Tetrahymena
thermophila SEQ ID NO. 98 TBAT_ONCMY Onchorhynchus mykiss SEQ ID NO. 99
TBA_TO R MA Torpedo marmorata SEQ ID NO. 100 TBA_TOXGO Taxoplasma
gondii SEQ ID NO. 101 TBA_TRYBR Trypanosoma brucei SEQ ID NO. 102
TBA_TRYCR Trypanosoma cruzi SEQ ID NO. 103 TBA_WHEAT Triticum aestivum
SEQ ID NO. 104 TBA_XEN LA Xenopus laevis SEQ ID NO. 105 TBB1_ANEPH
Anemia phyllitidis SEQ ID NO. 106 TBB1_ARATH Arabidopsis thaliana SEQ
ID NO. 107 TBB1_AVESA Avena sativa SEQ ID NO. 108 TBB1_BRUPA Brugia
pahangi SEQ ID NO. 109 TBB1_CHICK Gallus gallus SEQ ID NO. 110
TBB1_CHOCR Chondrus crispus SEQ ID NO. 111 TBB1_COLGL Glomerella
cingulata SEQ ID NO. 112 TBB1_COLGR Glomerella graminicola SEQ ID NO.
113 TBB1_CYAPA Cyanaphora paradoxa SEQ ID NO. 114 TBB1_DAUCA Daucus
carota SEQ ID NO. 115 TBB1_ELEIN Eleusine indica SEQ ID NO. 116
TBB1_EMENI Emericella nidulans SEQ ID NO. 117 TBB1_GADMO Gadus morhua
SEQ ID NO. 118 TBB1_GEOCN Galactomyces geotrichum SEQ ID NO. 119
TBB1_HOMAM Homarus americanus SEQ ID NO. 120 TBB1_HU MAN Homo sapiens
SEQ ID NO. 121
TBB1_LU PAL Lupinus albus SEQ ID NO. 122 TBB1_MAIZE Zea mays
SEQ ID NO. 123 TBB1_MANSE Manduca sexta SEQ ID NO. 124 TBB1_NOTCO
Notothenia coriiceps SEQ ID NO. 125 TBB1_ORYSA Oryza sativa SEQ ID NO.
126 TBB1_PARTE Paramecium tetraurelia SEQ ID NO. 127 TBB1_PEA Pisum
sativus SEQ ID NO. 128 TBB1_PHYPO Physarum polycephalum SEQ ID NO. 129
TBB1_PORPU Porphyra purpura SEQ ID NO. 130 TBB1_RAT Rattus norvegicus
SEQ ID NO. 131 TBB1_SOLTU Solanum tuberosum SEQ ID NO. 132 TBB1_SOYBN
Glycine max SEQ ID NO. 133 TBB1_TRIVI Trichoderma viride SEQ ID NO. 134
TBB1_VOLCA Volvox carteri SEQ ID NO. 135 TBB1_WHEAT Triticum aestivum
SEQ ID NO. 136 TBB2_ANEPH Anemia phyllitidis SEQ ID NO. 137 TBB2_ARATH
Arabidopsis thaliana SEQ ID NO. 138 TBB2_CAEEL Caenorhabditis elegans
SEQ ID NO. 139 TBB2_CHICK Gallus gallus SEQ ID NO. 140 TBB2_COLGL
Glomerella cingulata SEQ ID NO. 141 TBB2_COLG R Glomerella graminicola
SEQ ID NO. 142 TBB2DAUCA Daucus carota SEQ ID NO. 143 TBB2_DROER
Drosophila erecta SEQ ID NO. 144 TBB2_DROM E Drosophila melanogaster
SEQ ID NO. 145 TBB2_ELEIN Eleusine indica SEQ ID NO. 146 TBB2_EMENI
Emericella nidulans SEQ ID NO. 147 TBB2_ERYPI Erysiphe pisi SEQ ID NO.
148 TBB2_G EOCN Galactomyces geotrichum SEQ ID NO. 149 TBB2_HOMAM
Homarus americanus SEQ ID NO. 150 TBB2_HUMAN Homo sapiens SEQ ID NO.
151 TBB2_LUPAL Solanum tuberosum SEQ ID NO. 152 TBB2_MAIZE Zea mays SEQ
ID NO. 153 TBB2_ORYSA Oryza sativa SEQ ID NO. 154 TBB2_PEA Pisum
sativus SEQ ID NO. 155 TBB2_PHYPO Physarum polycephalum SEQ ID NO. 156
TBB2_PORPU Porphyra purpura SEQ ID NO. 157 TBB2_SOLTU Solanum tuberosum
SEQ ID NO. 158 TBB2_SOYBN Glycine max SEQ ID NO. 159 TBB2_TRIVI
Trichoderma viride SEQ ID NO. 160 TBB2_WH EAT Triticum aestivum SEQ ID
NO. 161 TBB2_XENLA Xenopus laevis SEQ ID NO. 162 TBB3_ANEPH Anemia
phyllitidis SEQ ID NO. 163 TBB3_CHICK Gallus gallus SEQ ID NO. 164
TBB3_D ROME Drosophila melanogaster SEQ ID NO. 165 TBB3_ELEIN Eleusine
indica SEQ ID NO. 166 TBB3_MAIZE Zea mays SEQ ID NO. 167 TBB3_ORYSA
Oryza sativa SEQ ID NO. 168 TBB3_PEA Pisum sativus SEQ ID NO. 169
TBB3_PORPU Porphyra purpura SEQ ID NO. 170 TBB3_SOYBN Glycine max SEQ
ID NO. 171 TBB3_WHEAT Triticum aestivum SEQ ID NO. 172 TBB4_ARATH
Arabidopsis thaliana SEQ ID NO. 173 TBB4_CAEEL Caenorhabditis elegans
SEQ ID NO. 174 TBB4_CHICK Gallus gallus SEQ ID NO. 175 TBB4_ELEI N
Eleusine indica SEQ ID NO. 176 TBB4_HUMAN Homo sapiens SEQ ID NO. 177
TBB4_MAIZE Zea mays SEQ ID NO. 178 TBB4_PORPU Porphyra purpura SEQ ID
NO. 179 TBB4_W H EAT Triticum aestivum SEQ ID NO. 180 TBB4_XENLA
Xenopus laevis SEQ ID NO. 181 TBB5_ARATH Arabidopsis thaliana SEQ ID
NO. 182 TBB5_CHICK Gallus gallus SEQ ID NO. 183 TBB5_ECTVR Ectocarpus
variabilis SEQ ID NO. 184 TBB5_HUMAN Homo sapiens SEQ ID NO. 185
TBB5_MAIZE Zea mays SEQ ID NO. 186 TBB5_WHEAT Triticum aestivum SEQ ID
NO. 187 TBB6_ARATH Arabidopsis thaliana SEQ ID NO. 188 TBB6_CHICK
Gallus gallus SEQ ID NO. 189 TBB6_ECTVR Ectocarpus variabilis SEQ ID
NO. 190 TBB6_MAIZE Zea mays SEQ ID NO. 191 TBB7_ARATH Arabidopsis
thaliana SEQ ID NO. 192 TBB7_CAEBR Caenorhabditis briggsae SEQ ID NO.
193 TBB7_CAEEL Caenorhabditis elegans SEQ ID NO. 194 TBB7_CHICK Gallus
gallus SEQ ID NO. 195 TBB7_MAIZE Zea mays SEQ ID NO. 196 TBB8_ARATH
Arabidopsis thaliana SEQ ID NO. 197 TBB8_MAIZE Zea mays SEQ ID NO. 198
TBB9_ARATH Arabidopsis thaliana SEQ ID NO. 199 TBB_ACHKL Achlya
klebsiana SEQ ID NO. 200 TBB_ACRCO Neotyphodium coenophialum SEQ ID NO.
201 TBB_AJECA Ajellomyces capsulatum SEQ ID NO. 202 TBB_ASPFL
Aspergillus flavus SEQ ID NO. 203 TBB_ASPPA Aspergillus parasiticus SEQ
ID NO. 204 TBB_BABBO Babesia bovis SEQ ID NO. 205 TBB_BOMMO Bombyx mori
SEQ ID NO. 206 TBB_BOTCI Botryotinia fuckeliana SEQ ID NO. 207
TBB_CANAL Candida albicans SEQ ID NO. 208 TBB_CEPAC Acremonium
chrysogenum SEQ ID NO. 209 TBB_CHLIN Chlamydomonas incerta SEQ ID NO.
210 reinhardtii TBB_CHLRE Chlamydomonas reinhardtii SEQ ID NO. 211
TBB_CICAR Cicer arietinum SEQ ID NO. 212 TBB_DICDI Dictyostelium
discoideum SEQ ID NO. 213 TBB_EIMTE Eimeria tenella SEQ ID NO. 214
TBB_EPITY Epichloe typhina SEQ ID NO. 215 TBB_ERYGR Blumenia graminis
SEQ ID NO. 216 TBB_EUGGR Euglena gracilis SEQ ID NO. 217 TBB_EUPCR
Monoeuplotes crassus SEQ ID NO. 218 TBB_EUPFO Euplotes focardii SEQ ID
NO. 219 TBB_EUPOC Euplotes octocarinatus SEQ ID NO. 220 TBB_GIALA
Giardia intestinalis SEQ ID NO. 221 TBB_GIBFU Gibberella fujikuroi SEQ
ID NO. 222 TBB_HALDI Haliotis discus SEQ ID NO. 223 TBB_HORVU Hordeum
vulgare SEQ ID NO. 224 TBB_LEI ME Leishmania mexicana SEQ ID NO. 225
TBB_LYMST Lymnae stagnalis SEQ ID NO. 226 TBB_LYTPI Lytechinus pictus
SEQ ID NO. 227 TBB_MYCPJ Mycosphaerella pini SEQ ID NO. 228 TBB_NAEGR
Naegleria gruberi SEQ ID NO. 229 TBB_NEUCR Neurospora crassa SEQ ID NO.
230 TBB_OCTDO Octopus Dofleini SEQ ID NO. 231 TBB_ONCGI Onchocerca
gibsoni SEQ ID NO. 232 TBB_PARLI Paracentrotus lividus SEQ ID NO. 233
TBB_PENDI Penicillium digitatum SEQ ID NO. 234 TBB_PESMI Pestalotiopsis
microspora SEQ ID NO. 235 TBB_PHANO Phaeosphaeria nodorum SEQ ID NO.
236 TBB_PHYCI Phytophthora cinnamorni SEQ ID NO. 237 TBB_PIG Sus scrofa
SEQ ID NO. 238 TBB_PLAFA Plasmodium falciparum SEQ ID NO. 239 TBB_PLAFK
Plasmodium falciparum SEQ ID NO. 240 TBB_PLESA Pleurotus sajor-caju SEQ
ID NO. 241 TBB_PNECA Pneumocystis carinii SEQ ID NO. 242 TBB_POLAG
Polytomella agilis SEQ ID NO. 243 TBB_PSEAM Pseudopleuronectes
americanus SEQ ID NO. 244 TBBQ_HUMAN Homo sapiens SEQ ID NO. 245
TBB_RHYSE Rhynchosporium secalis SEQ ID NO. 246
TBB_SCHCO Schizophyllum commune SEQ ID NO. 247 TBB_SCHPO
Schizosaccharomyces pombe SEQ ID NO. 248 TBB_STRPU Strongylocentrotus
purpuratus SEQ ID NO. 249 TBB_STYLE Stylonichia lemnae SEQ ID NO. 250
TBB_TETPY Tetrahymena pyriformis SEQ ID NO. 251 TBB_TETTH Tetrahymena
thermophila SEQ ID NO. 252 TBB_THAWE Thalassiosira weisflogii SEQ ID
NO. 253 TBB_TOXGO Taxoplasma gondii SEQ ID NO. 254 TBB_TRYBR
Trypanosoma brucei SEQ ID NO. 255 TBB_TRYCR Trypanosoma cruzi SEQ ID
NO. 256 TBB_VENIN Venturia inaequalis SEQ ID NO. 257 TBBX_HUMAN Homo
sapiens SEQ ID NO. 258 TBB_YEAST Saccharomyces cerevisiae SEQ ID NO.
259 TBD_H U MAN Homo sapiens SEQ ID NO. 260 TBE_HUMAN Homo sapiens SEQ
ID NO. 261 TBG1_HUMAN Homo sapiens SEQ ID NO. 262 TBG1_MAIZE Zea mays
SEQ ID NO. 263 TBG1_MOUSE Mus musculus SEQ ID NO. 264 TBG2_ARATH
Arabidopsis thaliana SEQ ID NO. 265 TBG2_DROM E Drosophila melanogaster
SEQ ID NO. 266 TBG2_EU PCR Monoeuplotes crassus SEQ ID NO. 267
TBG2_EUPOC Euplotes octocarinatus SEQ ID NO. 268 TBG2_HUMAN Homo
sapiens SEQ ID NO. 269 TBG2_MAIZE Zea mays SEQ ID NO. 270 TBG2_MOUSE
Mus musculus SEQ ID NO. 271 TBG2_ORYSA Oryza sativa SEQ ID NO. 272
TBG3_MAIZE Zea mays SEQ ID NO. 273 TBG_ANEPH Anemia phyllitidis SEQ ID
NO. 274 TBG_CAEEL Caenorhabditis elegans SEQ ID NO. 275 TBG_CANAL
Candida albicans SEQ ID NO. 276 TBG_CHLRE Chlamydomonas reinhardtii SEQ
ID NO. 277 TBG_COCHE Cochlioboius heterostrophus SEQ ID NO. 278
TBG_EMENI Emericella nidulans SEQ ID NO. 279 TBG_ENTHI Entamoeba
histolytica SEQ ID NO. 280 TBG_EUPAE Euplotes aediculatus SEQ ID NO.
281 TBG_NEUCR Neurospora crassa SEQ ID NO. 282 TBG_PHYPA Physcomitrella
patens SEQ ID NO. 283 TBG_PLAFO Plasmodium falciparum SEQ ID NO. 284
TBG_RETFI Reticulomyxa filosa SEQ ID NO. 285 TBG_SCHJP
Schizosaccharomyces japonicus SEQ ID NO. 286 TBG_SCHPO
Schizosaccharomyces pombe SEQ ID NO. 287 TBG_USTVI Microbotryum
violaceum SEQ ID NO. 288 TBG_XENLA Xenopus laevis SEQ ID NO. 289
TBG_YEAST Saccharomyces cerevisiae SEQ ID NO. 290
[0053] Referring again to the Tuszynksi paper, and in referring
to "Model Construction." the paper disclosed that: "The structures of
alpha and beta tubulins are known to be quite similar, being nearly
indistinguishable at 6 Angstroms . . . dispite only a 40% amino acid
homology." As support for this statement, reference is made to an
article by H. Li et al., "Microtubule structure at 8 angstrom
resolution," Structure 10:1317-1328, 2002."
[0054] Referring again to the Tuszynksi paper, it is disclosed
that: " . . . Since the sequences within an alpha or beta tubulin
family are more similar to each other than to those sequences belonging
to the other families of tubuins, it is reasonable to believe that any
given sequence should produce a structure very similar to another
member of a given family. Further support for this comes from the
published structures of Nogales et al. (1998) and Lowe et al. (2001)
which are of a porcine sequence, but which were fit to data from an
inhomogeneous bovine sample." The Nogales et al. reference is to an
article by E. Nogales et al., "Structure of the alpha/beta tubulin
dimmer by electron crystallogaraphy," Nature 393: 199-303. The Lowe et
al. reference was to an article by J. Lowe et al., "Refined structure
of alpha/betal tubulin at 3.5 angstrom resolution," Journal of
Molecular Biology 313:1045-1057 (2001).
[0055] Referring again to the Tuszynksi paper, it is disclosed
that: "Accordingly, by substituting appropriate amino acid side chains
and properly adjusting other residues to accommodate insertions and
deletions and in the sequence, crystallographic structures can be used
as a framework to produce model structures with different sequences
with a high degree of confidence."
[0056] As is also disclosed in the Tuszynski et al. paper, "To
build such 3D structures of the many isotypes Modeller (version 6.2)
was used [Marti-Renom 2000]." The Marti-Renom reference is an article
by M. A. Marti-Renom et al., "Comparative protein structure modeling of
genes and genomes," Annu. Rev. Biophys. Biomol. Struct. 29:291-325,
2000.
[0057] In the Marti-Renom paper, it is stated that the MODELLER
database is disclosed at "guitar.Rockefeller.edu/modeler.html" and is
discussed in an article by A. Sali et al., "Comparative protein
modeling by satisfaction of spatial restraints," J. Mol. Biol.
234:799-915, 1993.
[0058] The Modeller database is also referred to in the patent
literature. Reference may be had, e.g., to U.S. Pat. Nos. 5,859,972;
5,968,782; 5,985,643; 6,225,446; 6,251,620 (three dimensional structure
of a ZAP tyrosine protein kinase fragment and modeling methods), U.S.
Pat. Nos. 6,391,614; 6,417,324; 6,459,996; 6,468,772; 6,495,354;
6,495,674; 6,532,437; 6,559,297; 6,605,449; 6,642,041; 6,607,902;
6,645,762; 6,569,656; 6,677,377 (structure based discovery of
inhibitors of matriptase for the treatment of cancer and other
conditions), U.S. Pat. No. 6,680,176; and the like. The entire
disclosure of each of these United States patents is hereby
incorporated by reference into this specification.
[0059] The Modeller database may be used for the "comparative
protein structure modeling" that is discussed in, e.g., the Marti-Renom
paper (and also in the Tuszynski paper) . . . Such "comparative protein
structure modeling" is also referred to in the patent literature.
Reference may be had, e.g., to U.S. Pat. Nos. 6,462,189; 6,703,199; and
6,703,901; reference may also be had to published United States patent
applications 2002/0045578 and 2004/0014944 (method and system useful
for structural classification of unknown polypeptides); and reference
also may be had to international patent publications WO0135255 (large
scale comparative protein structure modeling); WO0234877; WO03019183
(process for the informative and iterative design of a gene-family
screening library), and WO03029404. The entire disclosure of each of
these United States patents, of each of these published United States
patent applications, and of each of these international patent
applications, is hereby incorporated in its entirety into this
specification.
[0060] Referring again to the Tuszynksi paper, and to the
Modeller program used therein, it is disclosed that: "To build the
library of 3D tubulin structures, Modeller (version 6v2) was used . . .
. This program uses alignment of the sequences with known related
structures, used as templates, to obtain spatial constraints that the
output structure must satisfy. Additional restraints derived from
statistical studies of representative protein and chemical structures
are also used to ensure a physically probable result. Missing loop
regions are predicuted by simulated annealing optimization of a
molecular mechanics model."
[0061] As is known to those skilled in the art, a system as
large as tubulin may have many local energy minima; thus, an energy
minimization program may not be sufficient to find the lowest global
minimum. To seek the difference in conformation between GTP (guanosine
triphosphate) and GDP (guanosine diphosphate) tubulin, applicants
preferably use an annealing procedure in which the molecule is heated
up well beyond physiological temperatures to induce a difference in
conformation and is then slowly cooled down below physiological
temperatures. The cooling process is maintained at a low enough rate so
that the molecule can move between minima and find a lower energy final
conformation. For a similar process that is applied by kinesin,
reference may be had, e.g., to an article by W. Wriggers et al. on
"Nucleotide-dependent movements of the kinesis motor domain predicted
by simulated annealing," Biophys. J., 75:646-661, August, 1998.
[0062] In one embodiment of the process of this invention, the
TINKER molecular simulation software is used. This software package is
described, e.g., in an article by M. J. Dudek et al. on the "Accurate
modeling of the intramolecular electrostatic energy of proteins," J.
Comput. Chem, 16:791-816, 1995. This TINKER software is also described
in, e.g., U.S. Pat. Nos. 5,049,390; 6,180,612; 6,531,306; 6,537,791;
and 6,573,060. The entire disclosure of each of these United States
patents is hereby incorporated by reference into this specification.
[0063] In one embodiment, the TINKER anneal program is
preferably used to heat up the proteins from 1 degree Kelvin to 400
degrees Kelvin and then cool them very slowly to 200 degrees Kelvin.
[0064] In one embodiment, the anneal program is used to heat up
the proteins from a temperature of from about 1 to about 299 degrees
Kelvin to a temperature within the range of from about 300 to about 500
degrees Kelvin linearly over a period of from about 100 to about
100,000 picoseconds, preferably, over a period of at least about 200
picoseconds.
[0065] Referring again to the Tuszynksi paper, it is disclosed
therein that "Since the 3D structures of tubulin lack the extreme
C-termini of the proteins, we used this capability to create structure
files that include the C-terminal amino acids by including those
portions of the sequence in the Modeller input." In the process of this
invention, the tubulin with its C-terminii, "tubulin-C," may be
generated by adding the missing residues onto the alpha band
beta-tubulin. Thus, e.g., one may use the "MOLMOL" software to add the
"missing residues." See, e.g., an article by R. Koradi, "MOLMOL: a
program for display and analysis of macromolecular structures," J. Mol.
Graphics, 14:51-55, 1996. Reference also may be had, e.g., to U.S. Pat.
No. 6,077,682 (method of identifying inhibitors of sensor histidine
kinases through rational drug design); U.S. Pat. Nos. 6,162,627;
6,171,804 (method of determining interdomain orientation and changes of
interdomain orientation on ligaton), U.S. Pat. No. 6,723,697; and the
like. The entire disclosure of each of these United States patents is
hereby incorporated by reference into this specification.
[0066] In the process described in the Tuszynski paper, the
missing residues were added by the Modeller software, and the
"tubulin-C model" was then subjected to an energy minimization program.
As is known to those skilled in the art, in an energy minimization
program, one searches for the minimum energy configuration of a
molecule by moving down a gradient through configuration space (see W.
F. van Gusteren et al., "Computer simulation of molecular dynamics:
Methodology, applications and perspectives in chemistry," Angew. Chem.
Int. Ed. Engl., 29-992-1023, 1990. Reference also may be had, e.g., to
U.S. Pat. No. 5,453,937 (method and system for protein modeling); U.S.
Pat. No. 5,557,535 (method and system for protein modeling); U.S. Pat.
No. 5,884,230 (method and system for protein modeling); U.S. Pat. No.
6,188,965 (apparatus and method for automated protein design); U.S.
Pat. No. 6,269,312 (apparatus ad method for automated protein design);
U.S. Pat. Nos. 6,376,504; 6,380,190; 6,403,312 (protein design
automatic for protein libraries); U.S. Pat. Nos. 6,514,729; 6,545,152;
6,682,923; 6,689,793; 6,708,120 (apparatus and method for automated
protein design); U.S. Pat. Nos. 6,746,853; 6,750,325; and the like. The
entire disclosure of each of these United States patents is hereby
incorporated by reference into this specification.
[0067] Referring again to the Tuszynski paper, it is disclosed
that: "For our work we used five structures from the tubulin family as
templates. One of these from PDB file 1FSZ (Lowe and Amos, 1998) is the
crystal structure of FtsZ, a putative prokaryontic homolog of tublin
Erickson (1997)." The Lowe and Amos reference is an article by J. Lowe
et al., "Crystal Structure of the bacterial cell-division protein
FtsZ," Nature, 393:203-206, 1998. The Erickson reference is an article
by H. P. Erickson, "FtsZ, a tubulin homologue, in prokaryote cell
division," Trends Cell Biol., 7:362-367, 1997. Reference also may be
had, e.g., to U.S. Pat. No. 6,350,866, the entire disclosure of which
is hereby incorporated by reference in to this specification.
[0068] Another two of the tubulin templates described in the
Tuszynski paper were described as being "Two more structures (and
alpha- and a beta-monomer) came from 1TUB (Nogales et al., 1998), the
original tubulin crystal . . . " The Nogales et al. reference is E. S.
Nogales et al., "Structure of the alpha/beta tubulion dimmer by
electron crystallography," Nature 393:199-203, 1998.
[0069] Yet another two of the tubulin templates described in
the Tuszynski paper were " . . . two more from 1JFF (Lowe et al. 2001),
a more refined version of the same structure." The Lowe et al.
reference is an article by J. H. Lowe et al. on "Refined structure of
alpha/beta tubulin at 3.5 angstrom resolution," Journal of Molecular
Biology, 313:1045-1057, 2001.
[0070] As is also disclosed in the Tuszynski et al. paper,
"With the resulting library of structural tubulin models, various
computational estimates of physical properties of the different
tubulins may be made. These include the volume, surface area, net
charge, and dipole moments. We performed these calculations on the
model structures, typically using analysis tools within the Gromacs
(Lindahl et al., 2001) molecular dynamics package (version 3.1.4) . . .
." The Lindahl et al. reference was an article by E. B. Lindahl et al.
entitled "GROMACS 3.0: A package for molecular simulation and
trajectory analysis," J. Mol. Mod., 7:306-317, 2001. Reference also may
be had, e.g., to published United States patent applications
2003/0082521, 2003/0108957, 2003/0187626 (method for providing thermal
excitation to molecular dynamics models), and 2003/0229456 (methods for
predicting properties of molecules). The entire disclosure of each of
these published patent applications is hereby incorporated by reference
into this specification.
[0071] As is also disclosed in the Tuszynski article, "We also
analyzed the properties of the C-terminal projection. We first needed
to define this region. We used Clustal W (version 1.82) (Thompson et
al., 1994) in order to obtain a multiple sequence alignment amongst the
peptides. The multiple alignment then allows rapid identification of
corresponding residues in all of the sequences." The Thompson et al.
reference is an article by J. D. Thompson et al. on "CLUSTAL W:
Improving the sensitivity of progressive multiple sequence alignment
through sequence weighting, positions-specific gap penalties and weight
matrix choice," Nucleic Acids Research, 22:4673-4680, 1994. Reference
also may be had, e.g., to U.S. Pat. Nos. 6,403,558; 6,451,548;
6,465,431; 6,489,537; 6,559,294; 6,582,950; 6,632,621; 6,653,283;
6,586,401; 6,589,936; 6,734,283; and the like. The entire disclosure of
each of these United States patents is hereby incorporated by reference
into this specification.
[0072] As is also disclosed in the Tuszynski paper, "Other
interesting properties of tubulin are inherent to dimers. In order to
create a set of dimers for study we fit an alpha-monomer and a
beta-monomer to their corresponding monomers in the 1JFF structure.
This was done by rotation and translation of the Modeller structures in
order to minimize the RMSD between a set of alpha-carbons from residues
present in all the sequences. This procedure does not prevent steric
conflicts between the two monomers and can create dimers with overlaps.
However, for some types of calculations such as estimates of multipole
components, this will not prevent reasonable results. A set of over 200
dimers was obtained in this way by constructing all the alpha-beta
pairs that share a common species identifier in the Swiss-Prot name.
This restricts the number of dimers to a manageable set and voids
hybrids such as a carrot/chicken crossing that would not occur
naturally."
[0073] As is also disclosed in the Tuszynski paper, "The
library of tubulin structures . . . were analyzed by molecular
mechanics to determine their net charges, dipole moment components,
dipole orientations, volumes, surface areas and the lengths and charges
of their C-termini. The results of our computations in this regard are
shown in Table 2." The Table 1 below contains the data presented in the
Table 2 of the article. TABLE-US-00002 TABLE 1 TABLE 1 Net Volume Name
<M_x> <M_y> <M_z> <IMI> Chg A{circumflex over (
)}3 Area A{circumflex over ( )}2 TBA1_ANEPH -3.02E+02 -6.06E+02
1.16E+03 1.34E+03 -22 43722.51 46119.66 TBA1_ARATH .sup. 5.03E+01
-4.69E+02 1.50E+03 1.57E+03 -24 43725.6 46097.33 43082.05 TBA1_CHICK
-2.84E+02 -9.75E+02 1.61E+003 1.90E+03 -21 40489.52 F TBA1_CHLRE
-6.10E+01 -7.44E+02 7.28E+02 1.04E+03 -21 43642.98 45933.57 TBA1_DROME
.sup. 5.95E+01 -6.29E+02 1.05E+03 1.23E+03 -22 44030.65 46824.19
TBA1_ELEIN -5.54E+01 -3.29E+02 1.37E+03 1.41E+003 -24 43860.52 46749.02
TBA1 _EMENI -1.86E+02 -1.23E+03 7.71E+002 1.47E+03 -24 44069.69 46434.2
TBA1 _ENTHI .sup. 2.50E+02 -6.70E+02 1.46E+02 7.30E+02 -10 44061.3
46460.88 TBA1_HOMAM -1.53E+02 -1.15E+03 9.52E+02 1.50E+03 -22 44167.33
46824.48 TBA1_HORVU .sup. 1.55E+02 -3.40E+02 1.27E+03 1.32E+03 -23
43590.96 45826.84 TBA1 _HUMAN -4.67E+02 -8.10E+02 1.11E+03 1.45E+03 -24
44250.31 47173.96 TBA1_MAIZE .sup. 1.03E+02 -3.28E+02 1.28E+03 1.32E+03
-24 43834.72 46651.62 TBA1_MOUSE -3.33E+02 -1.21E+03 7.70E+02 1.47E+03
-24 44263.22 47101.9 TBA1_NEUCR .sup. 4.87E+01 -6.76E+02 6.94E+02
9.70E+02 -19 44052.23 46358.29 TBA1_ORYSA -2.19E+02 -1.16E+03 1.12E+03
1.62E+03 -24 43648.39 45939.87 TBA1_PARLI 2.71E+002 -1.19E+03 1.78E+03
2.16E+03 -25 44183.57 46803.97 TBA1_PEA -3.23E+02 -7.69E+02 1.05E+03
1.34E+03 -23 43567.64 45723.58 TBA1_PELFA -4.01E+002 -1.41E+003
8.27E+002 1.68E+003 -24 43906.79 46567.68 TBA1_PNECA -2.57E+001
-9.24E+002 9.87E+002 1.35E+003 -20 44334.85 47012.18 TBA1_SCHPO
-2.56E+000 -1.26E+003 6.43E+002 1.41E+003 -22 44895.34 47968.48
TBA1_STYLE -2.03E+002 -1.27E+003 8.29E+002 1.53E+003 -23 43243.03
45451.26 TBA1_VOLCA -1.26E+002 -8.00E+002 6.88E+002 1.06E+003 -21
43630.21 45981.34 TBA1_YEAST -1.90E+002 -9.79E+002 4.23E+002 1.08E+003
-22 43873.76 46461.59 37487.42 TBA2_ANEPH -2.78E+002 -8.85E+002
1.35E+003 1.64E+003 -15 35461.49 F TBA2_ARATH -1.18E+002 -6.40E+002
1.50E+003 1.63E+003 -23 43766.11 46803.45 TBA2_CAEEL -1.39E+002
-8.51E+002 1.07E+003 1.37E+003 -22 43890.89 46319.2 TBA2_CHICK
-9.83E+001 -2.00E+002 1.12E+003 1.14E+003 -25 43774.22 46365.41
TBA2_CHLRE -1.41E+002 -8.09E+002 7.99E+002 1.15E+003 -22 43601.27
45660.58 TBA2_DROME -9.25E+001 -1.09E+003 7.03E+002 1.30E+003 -21
44116.52 46892.4 TBA2_ELEIN 3.81E+001 -3.80E+002 1.39E+003 1.44E+003
-21 43843.11 45940.56 TBA2_EM EN I -3.11E+002 -1.41E+003 6.14E+002
1.57E+003 -21 44173.08 46890.29 TBA2_HOMAM -7.38E+002 -6.68E+002
9.66E+002 1.39E+003 -20 44252.35 47078.27 TBA2_HORVU -1.24E+002
-5.45E+002 1.44E+003 1.54E+003 -24 43705.55 46254.23 TBA2_HUMAN
-7.89E+001 -1.27E+003 7.92E+002 1.49E+003 -23 44045.61 46631.11
TBA2_MAIZE 3.87E+001 -3.08E+002 1.32E+003 1.35E+003 -24 43670.06
46059.53 TBA2_MOUSE -4.62E+002 -1.26E+003 7.32E+002 1.53E+003 -24
44188.6 46902.07 TBA2_NEUCR -4.64E+002 -8.59E+002 6.78E+002 1.19E+003
-22 43969.77 46397.94 TBA2PATVU -7.08E+002 -1.23E+003 9.86E+002
1.73E+003 -24 44205.67 46802.41 TBA2_PELFA -5.63E+002 -1.35E+003
1.09E+003 1.82E+003 -25 43972.36 46729.96 TBA2_SCHPO -3.69E+002
-6.06E+002 7.84E+002 1.06E+003 -23 44413.68 47084.43 TBA2_STYLE
-1.52E+002 -1.20E+003 1.42E+003 1.87E+003 -21 43462.96 45794.68
TBA3_ARATH -1.37E+002 -6.23E+002 1.31E+003 1.45E+003 -23 43767.64
46340.56 34076.89 TBA3_CHICK 9.52E+001 -1.35E+003 4.35E+002 1.42E+003
-11 31862.21 F TBA3_DROME 8.39E+001 -5.89E+002 9.56E+002 1.13E+003 -22
44025.38 46744.36 TBA3_ELEIN -2.23E+002 -1.06E+003 7.94E+002 1.34E+003
-24 43622.68 45927.05 TBA3_HOMAM -4.66E+002 -1.35E+003 9.96E+002
1.74E+003 -24 44023.88 46424.8 TBA3_HORVU 1.67E+002 -2.61E+002
1.19E+003 1.23E+003 -24 43774.25 46614.74 TBA3_MAIZE -2.26E+002
-9.73E+002 1.25E+003 1.60E+003 -20 43523.21 45861.11 TBA3_MOUS E
-7.89E+001 -1.27E+003 7.92E+002 1.49E+003 -23 44045.61 46631.11
TBA3_YEAST -3.29E+001 -1.38E+003 7.81E+001 1.38E+003 -20 43772.88
46394.31 34085.01 TBA4_CHICK -7.55E+001 -1.23E+003 1.34E+003 1.82E+003
-19 31763.1 F TBA4_DROME -4.56E+002 -9.92E+002 8.14E+002 1.36E+003 -18
44749.62 46802.21 TBA4_HUMAN -4.56E+001 -7.37E+002 1.29E+003 1.49E+003
-24 44006.12 46802.17 TBA4_MAIZE 1.91E+002 5.47E+002 5.31E+002
7.86E+002 -13 5653.1 6441.79 F TBA5_CHICK -5.61E+002 -8.51E+002
9.93E+002 1.42E+003 -24 44001.41 46787.46 TBA5_MAIZE 1.18E+002
-3.59E+002 1.20E+003 1.26E+003 -24 43664.32 46180.91 TBA6_ARATH
-4.74E+002 -9.38E+002 1.03E+003 1.47E+003 -23 43549.12 45981.06
TBA6_HUMAN -1.51E+002 -8.12E+002 9.12E+002 1.23E+003 -23 44019.72
46935.74 TBA6_MAIZE 1.05E+002 -2.29E+002 1.28E+003 1.30E+003 -24
43616.26 45962.24 TBA6_MOUS E -4.97E+002 -8.04E+002 8.36E+002 1.26E+003
-23 44005.43 46878.15 TBA8_CAEEL 4.38E+001 -1.35E+003 6.07E+002
1.48E+003 -21 44092.19 46452.13 34147.91 TBA8_CHICK -3.14E+002
-1.21E+003 6.74E+002 1.42E+003 -17 31941.5 F TBA8_HUMAN -2.56E+002
-1.13E+003 6.47E+002 1.33E+003 -24 44108.74 46846.78 TBA8_MOUS E
2.58E+001 -9.76E+002 5.25E+002 1.11E+003 -23 44094.24 46772.18 42810.21
TBA_AJECA 4.11E+002 -5.71E+002 -3.80E+002 8.00E+002 -11 40915.67 F
22925.51 TBAA_PN ECA 4.02E+002 -4.58E+002 -3.47E+002 7.01E+002 0
21163.74 F TBAA_SCHCO 6.78E+000 -9.52E+002 6.63E+002 1.16E+003 -20
43528.88 46457.95 TBA_AVESA 4.40E+002 -3.62E+002 3.57E+002 6.72E+002
-17 43193.08 45318.02 TBA_BLEJA -1.14E+002 4.91E+001 5.37E+001
1.35E+002 -17 4939.05 5726.72 F TBA_BOMMO -1.56E+002 -1.02E+003
5.91E+002 1.19E+003 -23 44002.66 46587.95 TBAB_SCHCO 1.68E+002
-8.87E+002 1.06E+003 1.39E+003 -17 43480.44 46447.1 TBA_CANAL
-2.94E+002 -1.58E+003 1.45E+002 1.61E+003 -20 43827.47 46383.14
TBA_CHLVU -3.40E+002 -1.04E+003 6.60E+002 1.28E+003 -23 43800.27
46511.59 TBA_DICDI -2.65E+002 -8.18E+002 4.88E+002 9.88E+002 -15
44897.67 47487.03 TBAD_PHYPO 7.24E+001 -8.54E+002 1.25E+003 1.51E+003
-22 43832.96 46203.15 TBAE_PHYPO 5.38E+001 -8.04E+002 9.48E+002
1.24E+003 -22 43712.79 46164.96 TBA_EUGGR -5.50E+002 -9.02E+002
7.55E+002 1.30E+003 -23 44007.88 46521.52 TBA_EU POC 3.58E+000
-8.90E+002 8.98E+002 1.26E+003 -22 43646.63 46268.82 TBA_EU PVA
-3.61E+002 -9.45E+002 6.25E+002 1.19E+003 -22 43678.31 46191.85
TBA_HAECO -5.01E+002 -9.24E+002 1.01E+003 1.45E+003 -23 44184.78
46867.6 TBA_LEPSE 0 2420.34 2750.51 F TBA_LYTPI -8.32E+002 -1.07E+003
1.57E+003 2.07E+003 -11 15959.86 17858.74 TBA_MYCGR 1.31E+001
-1.13E+003 8.25E+001 1.13E+003 -24 43927.86 46753.33 TBA_NAEGR
-4.44E+002 -1.04E+003 3.75E+002 1.19E+003 -23 44031.56 47036.09
TBA_NOTVI -1.47E+002 -8.20E+002 1.11E+003 1.39E+003 -24 44167.23
47197.14 TBAN_PHYPO -1.15E+002 -9.60E+002 8.97E+002 1.32E+003 -23
43607.45 45977.08 TBA_OCTDO -1.92E+002 -1.38E+003 1.19E+003 1.84E+003
-22 44189.74 46624.65 25881.13 TBA_OCTVU -3.40E+002 -1.21E+003
1.28E+003 1.79E+003 -12 23897.38 F TBA_ONCKE -1.99E+002 -1.15E+003
1.11E+003 1.61E+003 -24 43491.82 46581.51 TBA_OXYGR -8.66E+001
-1.08E+003 8.99E+002 1.41E+003 -23 43713.34 46373.82 12137.53 TBA_PICAB
-1.02E+002 -9.19E+001 -1.23E+002 1.84E+002 -10 11088.01 F TBA_PIG
-4.06E+002 -1.20E+003 6.32E+002 1.42E+003 -25 44083.31 46762.84
TBA_PLAFK -6.63E+002 -1.02E+003 1.09E+003 1.64E+003 -22 44159.95
46868.83 20787.14 TBA_PLAYO -4.57E+002 -9.08E+002 9.83E+002 1.41E+003
-12 19399.72 F TBA_PRUDU -2.93E+002 -1.09E+003 7.65E+002 1.36E+003 -23
43611.95 46257.89 TBA_SORMA -5.77E+001 -5.78E+002 8.84E+002 1.06E+003
-23 43781.31 46691.13 TBA_TETPY 1.49E+002 -8.36E+002 8.32E+002
1.19E+003 -21 43728.45 46142.49 TBA_TETTH -5.13E+001 -7.26E+002
8.46E+002 1.12E+003 -21 43757.64 46334.88 TBAT_ONCMY -1.81E+002
-1.07E+003 8.98E+002 1.41E+003 -23 44043.36 46640.52 TBA_TO R MA
-2.02E+002 -1.15E+003 6.45E+002 1.33E+003 -24 44318.53 47358.43
TBA_TOXGO 2.03E+002 -1.08E+003 1.11E+003 1.56E+003 -23 44098.44
46708.74 TBATRYBR -1.72E+002 -1.00E+003 8.63E+002 1.33E+003 -24 43867.8
46476.58 TBA_TRYCR -3.14E+002 -1.05E+003 9.14E+002 1.42E+003 -25
43758.17 46172.03 TBA_WHEAT 2.00E+002 -6.80E+002 1.39E+003 1.56E+003
-24 43805.34 46562.2 TBA_XEN LA -2.31E+002 -1.10E+003 6.83E+002
1.31E+003 -23 43943 46478.64 45949.82 TBB1_ANEPH -2.40E+002 -6.68E+002
1.53E+003 1.69E+003 -21 43331.36 F TBB1_ARATH -1.22E+003 -1.02E+003
2.69E+003 3.13E+003 -27 43751.93 46146.83 TBB1_AVESA -8.00E+002
-1.71E+003 2.56E+003 3.18E+003 -25 38101.3 41156.74 TBB1_BRUPA
-2.70E+002 -6.98E+002 1.81E+003 1.96E+003 -26 43981.4 46705.33 TBB1
_CHICK -1.13E+003 -1.02E+003 1.51E+003 2.15E+003 -25 43815.13 46865.04
TBB1 _CHOCR -6.25E+002 2.36E+002 1.77E+003 1.89E+003 -27 43977.7
45918.5 TBB1_COLGL -1.39E+003 -1.22E+003 3.07E+003 3.58E+003 -24
43616.55 45527.47 TBB1_COLGR -2.58E+002 -6.84E+002 2.23E+003 2.35E+003
-24 43341.08 45417.82 TBB1_CYAPA -1.03E+003 -1.03E+003 1.46E+003
2.06E+003 -25 43703.53 46639.47 TBB1_DAUCA -1.29E+003 -4.57E+002
2.76E+003 3.08E+003 -17 31337.94 33360.35 TBB1_ELEIN -1.10E+003
-1.03E+003 2.71E+003 3.10E+003 -26 43749.89 46609.62 TBB1 _EMENI
-3.24E+002 -1.74E+003 1.74E+003 2.48E+003 -23 43750.84 46675.24 TBB1
_GADMO -1.02E+003 -1.16E+003 1.20E+003 1.95E+003 -25 43817.93 47122.12
TBB1_GEOCN -9.55E+002 -9.87E+002 1.33E+003 1.91E+003 -24 43808.6
46274.2 TBB1_HOMAM -1.24E+003 -1.24E+003 2.66E+003 3.19E+003 -24
44266.15 45948.21 TBB1 _HU MAN -4.95E+002 -1.36E+003 2.04E+003
2.50E+003 -25 43765.02 46853.55 TBB1 _LU PAL -1.56E+003 -1.20E+003
2.93E+003 3.53E+003 -25 43898.24 46734.22 TBB1 _MAIZE -8.98E+002
-1.44E+003 2.28E+003 2.84E+003 -25 43776.83 46781.39 TBB1 _MANSE
3.26E+001 -4.73E+002 1.77E+003 1.83E+003 -25 44083.08 46838.17
TBB1_NOTCO -9.76E+002 -1.32E+003 2.51E+003 3.00E+003 -25 43698.37
46442.69 TBB1 _ORYSA -1.04E+003 -1.14E+003 1.59E+003 2.22E+003 -25
43757.44 46832.09 TBB1 _PARTE -1.64E+002 -1.30E+003 1.62E+003 2.08E+003
-24 43491.13 46266.33 46988.05 TBB1_PEA -1.68E+003 -1.21E+003 3.14E+003
3.76E+003 -26 44208.97 F
TBB1_PHYPO -2.55E+002 -9.30E+002 1.51E+003 1.79E+003 -23
47046.49 TBB1 _PORPU -9.28E+002 -9.18E+002 2.05E+003 2.43E+003 -28
43887.44 F TBB1 _RAT -1.24E+003 -1.25E+003 2.47E+003 3.04E+003 -25
43855.58 46823.88 TBB1_SOLTU -1.31E+003 -1.08E+003 3.00E+003 3.45E+003
-26 43921.08 45964.17 TBB1_SOYBN -1.99E+002 -1.02E+003 1.77E+003
2.06E+003 -22 43716.86 46392.04 TBB1 _TRIVI -2.09E+002 -1.21E+003
1.46E+003 1.91E+003 -21 43239.19 45386.6 TBB1_VOLCA -5.67E+002
-1.31E+003 1.89E+003 2.37E+003 -24 43622.7 46596.3 TBB1_WHEAT
-8.62E+002 -8.33E+002 2.00E+003 2.33E+003 -25 44053.19 47377.04
TBB2_ANEPH -2.34E+002 -1.01E+003 1.48E+003 1.81E+003 -18 40451.27
43579.53 TBB2_ARATH -1.86E+003 -8.40E+002 3.47E+003 4.03E+003 -27
44380.25 47532.89 TBB2_CAEEL -1.22E+003 -1.30E+003 2.60E+003 3.15E+003
-24 44042.41 46516.26 TBB2_CHICK -9.85E+002 -1.18E+003 2.51E+003
2.94E+003 -24 43790.78 46641.57 TBB2_COLGL 4.51E+001 -1.25E+003
2.44E+003 2.74E+003 -24 43772.28 46801.36 TBB2_COLG R -6.48E+002
-1.73E+003 2.32E+003 2.96E+003 -24 43776.26 46725.65 TBB2DAUCA
-3.80E+002 -1.04E+003 1.48E+003 1.85E+003 -25 43469.26 46734.07
TBB2_DROER -1.53E+003 -1.19E+003 3.02E+003 3.59E+003 -25 43757.19
46469.02 TBB2_DROM E -1.08E+003 -1.15E+003 2.59E+003 3.03E+003 -26
43646.93 46257.22 TBB2_ELEIN -5.42E+002 -6.38E+002 2.37E+003 2.52E+003
-26 44115.31 47287.17 TBB2_EMENI -3.49E+002 -1.26E+003 2.11E+003
2.48E+003 -22 43740.18 46549.31 TBB2_ERYPI -1.03E+003 -1.43E+003
1.94E+003 2.62E+003 -22 43844.47 46799.54 TBB2_G EOCN -1.16E+003
-5.41E+002 2.71E+003 3.00E+003 -28 44192.98 46317.34 TBB2_HOMAM
-4.43E+002 -9.20E+001 2.03E+003 2.08E+003 -24 44467.04 45943.42
TBB2_HUMAN -1.83E+002 -1.53E+003 1.72E+003 2.31E+003 -25 43874.46
47063.85 TBB2_LUPAL -1.68E+003 -1.16E+003 3.46E+003 4.02E+003 -26
44006.64 46759.35 TBB2_MAIZE -9.72E+002 -1.25E+003 2.49E+003 2.95E+003
-23 43627.92 46573.3 TBB2_ORYSA -7.82E+002 -1.02E+003 1.61E+003
2.06E+003 -25 44025.13 47076.73 TBB2_PEA -1.87E+003 -1.43E+003
2.80E+003 3.66E+003 -28 44119.64 47264.21 TBB2_PHYPO -1.62E+003
-9.87E+002 3.29E+003 3.80E+003 -24 44197.53 47050.16 TBB2_PORPU
-8.84E+002 -5.18E+002 1.80E+003 2.07E+003 -27 41546.31 44676.99
TBB2_SOLTU -9.18E+002 -1.31E+003 2.27E+003 2.78E+003 -26 44046.81
46135.05 TBB2_SOYBN -1.21E+003 -1.42E+003 2.75E+003 3.32E+003 -26
44355.5 47559.1 TBB2_TRIVI -5.10E+002 -9.99E+002 2.41E+003 2.66E+003
-24 43739.12 46059.81 TBB2_WH EAT -1.29E+003 -8.96E+002 3.24E+003
3.61E+003 -27 43864.6 46565.28 TBB2_XENLA -8.81E+002 -8.68E+002
1.96E+003 2.32E+003 -24 43639.84 46526.04 25945.03 TBB3_ANEPH
-7.63E+002 -8.82E+002 1.87E+003 2.20E+003 -9 24028.31 F TBB3_CHICK
-1.48E+003 -1.08E+003 3.01E+003 3.52E+003 -26 43756.1 46490.85 TBB3_D
ROME -1.29E+003 -1.65E+003 2.45E+003 3.22E+003 -23 44396.18 46320.02
TBB3_ELEIN -1.51E+003 -1.19E+003 2.31E+003 3.00E+003 -27 43974.3
47141.63 TBB3_MAIZE -1.40E+003 -1.05E+003 2.84E+003 3.34E+003 -25
43485.86 46040.71 TBB3_ORYSA -1.39E+003 -9.58E+002 2.79E+003 3.26E+003
-27 43797.24 46373.71 46648.94 TBB3_PEA -1.46E+003 -1.53E+003 2.81E+003
3.52E+003 -27 43323.16 F TBB3_PORPU -1.17E+003 -1.14E+003 2.60E+003
3.07E+003 -26 43529.91 46185.14 43199.08 TBB3_SOYBN 4.79E+002
-1.01E+003 -2.15E+002 1.14E+003 -9 40339.02 F TBB3_WHEAT -1.42E+003
-1.03E+003 3.02E+003 3.49E+003 -28 43670.95 46343.03 TBB4_ARATH
-1.06E+003 -1.21E+003 2.38E+003 2.87E+003 -25 43750.97 46535.59
TBB4_CAEEL -1.01E+003 -1.29E+003 1.88E+003 2.49E+003 -24 43683.61
46649.3 TBB4_CHICK -1.14E+003 -1.37E+003 2.71E+003 3.24E+003 -24
44048.85 46490.78 TBB4_ELEI N -1.14E+003 -9.75E+002 2.27E+003 2.72E+003
-25 43906.03 46993.99 TBB4_HUMAN -1.15E+003 -8.25E+002 2.06E+003
2.49E+003 -25 44223.15 47073.77 TBB4_MAIZE -1.01E+003 -9.45E+002
2.18E+003 2.58E+003 -24 43757.47 46283.88 TBB4_PORPU -1.71E+003
-1.27E+003 2.68E+003 3.42E+003 -28 44129.26 47186.23 TBB4_W H EAT
-7.03E+002 -1.24E+003 2.34E+003 2.75E+003 -25 43821.6 47046.07
TBB4_XENLA -1.18E+003 -1.11E+003 2.71E+003 3.16E+003 -24 43722.48
46674.76 TBB5_ARATH -1.80E+003 -1.08E+003 3.25E+003 3.86E+003 -28
44001.8 46634.56 TBB5_CHICK -7.93E+002 -1.16E+003 2.21E+003 2.62E+003
-25 43891.79 46604.44 TBB5_ECTVR -1.27E+003 -1.16E+003 2.72E+003
3.22E+003 -25 43750.92 46441.18 TBB5_HUMAN -8.71E+002 -1.12E+003
1.95E+003 2.41E+003 -24 43580.58 46339.09 TBB5_MAIZE -1.23E+003
-1.21E+003 2.47E+003 3.01E+003 -24 43798.93 46550.2 TBB5_WHEAT
-7.11E+002 -7.94E+002 2.47E+003 2.69E+003 -26 44109.94 47148.65
TBB6_ARATH -1.78E+003 -1.24E+003 2.49E+003 3.30E+003 -28 44352.88
47605.4 TBB6_CHICK -1.10E+001 -1.14E+003 1.81E+003 2.14E+003 -20
44013.78 46378.76 TBB6_ECTVR -1.19E+003 -1.20E+003 2.80E+003 3.27E+003
-24 43894.94 46566.79 TBB6_MAIZE -8.83E+002 -1.00E+003 1.53E+003
2.03E+003 -25 44054.31 47248.64 TBB7_ARATH -1.53E+003 -1.27E+003
3.15E+003 3.72E+003 -26 44339.38 47096.68 TBB7_CAEBR -2.49E+002
-1.05E+003 1.53E+003 1.87E+003 -21 43204.36 45682.33 TBB7_CAEEL
-1.65E+002 -9.89E+002 1.48E+003 1.79E+003 -19 43248.82 45913.33
TBB7_CHICK -1.07E+003 -1.20E+003 2.50E+003 2.97E+003 -24 43586.17
46372.26 TBB7_MAIZE -1.62E+003 -1.02E+003 3.29E+003 3.81E+003 -28
43810.2 46505.18 TBB8_ARATH -1.44E+003 -1.09E+003 3.25E+003 3.72E+003
-25 44295.12 47021.18 TBB8_MAIZE -2.88E+002 -1.30E+003 1.98E+003
2.39E+003 -25 43821.89 47069.82 TBB9_ARATH -1.85E+002 -1.19E+003
1.87E+003 2.22E+003 -27 43541.37 46710.21 TBB_ACHKL -1.49E+003
-1.18E+003 2.78E+003 3.37E+003 -27 43582.08 46093.01 TBB_ACRCO
-2.96E+002 -1.68E+003 2.83E+003 3.31E+003 -25 44030.34 47131.02
TBB_AJECA -1.90E+001 -1.42E+003 1.43E+003 2.02E+003 -17 43899.95
46111.64 TBB_ASPFL -1.25E+003 -1.07E+003 3.51E+003 3.88E+003 -23
43818.01 46347.28 TBB_ASPPA -1.09E+003 -1.17E+003 3.41E+003 3.77E+003
-23 43974.21 46807.66 TBB_BABBO -7.24E+001 -9.18E+002 9.11E+002
1.30E+003 -22 43389.67 46335.4 TBB_BOMMO -1.75E+002 -1.61E+003
3.52E+003 3.87E+003 -25 44236.29 47190.27 TBB_BOTCI -8.12E+001
-1.52E+003 2.48E+003 2.91E+003 -22 43733.8 46687 TBB_CANAL -7.66E+002
-1.32E+003 2.58E+003 3.00E+003 -27 43649.84 45896.27 TBB_CEPAC
-6.54E+002 -1.75E+003 2.46E+003 3.09E+003 -24 43755.92 46590.03
TBB_CHLIN -8.12E+002 -1.08E+003 2.18E+003 2.56E+003 -24 43440.63
46047.48 TBB_CHLRE -7.63E+002 -1.04E+003 1.67E+003 2.11E+003 -24
43580.97 46513.44 TBB_CICAR -1.47E+003 -1.26E+003 2.76E+003 3.37E+003
-26 44093.85 46346.37 TBB_DICDI -2.34E+002 -3.61E+002 2.34E+003
2.38E+003 -25 44756.23 46368.54 TBB_EIMTE -8.00E+002 -1.16E+003
2.38E+003 2.76E+003 -24 43849.31 46691.1 TBB_EPITY -1.72E+002
-9.30E+002 2.54E+003 2.71E+003 -24 43981.99 47087.79 TBB_ERYGR
-1.11E+003 -1.62E+003 2.49E+003 3.17E+003 -21 43521.09 46022.36
TBB_EUGGR -5.27E+002 -9.96E+002 1.74E+003 2.08E+003 -28 43338.8
45940.86 TBB_EUPCR -1.29E+003 -1.16E+003 2.41E+003 2.97E+003 -26
43733.12 46318.45 TBB_EUPFO -3.46E+002 -9.23E+002 2.17E+003 2.38E+003
-23 43736.75 46621.81 TBB_EUPOC -1.09E+003 -1.05E+003 2.34E+003
2.79E+003 -25 43474.13 46098.76 TBB_G!ALA -1.11E+003 -9.79E+002
2.43E+003 2.85E+003 -24 43973.16 47134.22 TBB_GIBFU -1.09E+003
-1.15E+003 3.42E+003 3.76E+003 -24 43717.6 46450.54 36441.03 TBB_HALDI
2.70E+002 -1.27E+003 5.88E+002 1.43E+003 -5 33789.64 F TBB_HORVU
-1.62E+003 -1.07E+003 3.28E+003 3.82E+003 -27 43828.44 46711.06 TBB_LEI
ME -4.57E+002 -1.16E+003 1.79E+003 2.18E+003 -25 43640.51 46103.21
TBB_LYMST -4.11E+002 9.15E+001 1.44E+003 1.50E+003 -16 11210.57
12653.09F TBB_LYTPI -1.31E+003 -6.00E+002 3.00E+003 3.33E+003 -13
17813.1 19768.08F TBB_MYCPJ -1.06E+003 -1.44E+003 3.06E+003 3.54E+003
-22 43590.41 46322.14 TBB_NAEGR -9.11E+002 -1.50E+003 2.96E+003
3.44E+003 -26 44385.1 47524.01 TBB_NEUCR -8.67E+002 -1.30E+003
3.63E+003 3.95E+003 -24 43678.94 46401.01 TBB_OCTDO -7.15E+002
-5.08E+002 1.86E+003 2.06E+003 -23 44106.16 46618.28 TBB_ONCGI
-7.02E+002 -1.07E+003 2.06E+003 2.42E+003 -21 43865.63 46450.72
TBB_PARLI -1.51E+003 -1.20E+003 3.26E+003 3.78E+003 -26 43883.1
46679.47 TBB_PENDI -4.37E+002 -1.44E+003 2.26E+003 2.71E+003 -21
43814.64 46891.07 TBB_PESMI -3.95E+002 -1.50E+003 2.53E+003 2.97E+003
-24 43722.64 46550.51 TBB_PHANO -7.61E+002 -1.12E+003 2.67E+003
2.99E+003 -21 43777.75 46470 TBB_PHYCI -6.90E+002 -1.01E+003 1.92E+003
2.27E+003 -24 43659.2 46213.31 TBB_PIG -3.59E+002 -1.55E+003 1.91E+003
2.48E+003 -25 43854.42 47042.18 TBB_PLASA -6.56E+002 -1.43E+003
1.55E+003 2.21E+003 -28 43731.91 46620.07 TBB_PLAFK -1.06E+003
-1.24E+003 1.40E+003 2.14E+003 -27 43684.84 46607.02 TBB_PLESA -1.51
E+003 -1.06E+003 2.51E+003 3.12E+003 -25 44047.21 46981.21 TBB_PNECA
5.85E+001 -7.05E+002 1.77E+003 1.90E+003 -22 43093.29 45488.54
TBB_POLAG -9.12E+002 -1.12E+003 2.29E+003 2.71E+003 -24 43428.91
45898.77 TBB_PSEAM -1.11E+003 -1.06E+003 1.54E+003 2.18E+003 -25
43784.36 46877.34 TBBQ_HUMAN -2.77E+002 -7.68E+002 5.86E+002 1.00E+003
-18 42440.37 44994.21 TBB_RHYSE -1.13E+003 -1.49E+003 3.08E+003
3.60E+003 -21 43739.88 46423.03 TBB_SCHCO -7.83E+002 -1.13E+003
1.60E+003 2.11E+003 -25 43970.42 46854.63 TBB_SCHPO -4.48E+002
-8.91E+002 2.11E+003 2.33E+003 -27 43446.86 45913.99 31526.12 TBB_STRPU
-6.17E+002 -1.36E+003 3.07E+003 3.41E+003 -18 29275.73 F TBB_STYLE
-9.53E+002 -1.02E+003 2.15E+003 2.56E+003 -24 43277.04 45763.19
TBB_TETPY -5.66E+002 -8.36E+002 1.78E+003 2.05E+003 -24 43557.91
46339.63 TBB_TETTH -5.22E+002 -8.68E+002 1.71E+003 1.99E+003 -25
43553.05 46384.46 TBB_THAWE -9.42E+002 -1.14E+003 2.35E+003 2.78E+003
-23 43337.8 45963.07 TBB_TOXGO -1.44E+003 -1.21E+003 2.28E+003
2.96E+003 -27 43887.58 46652.72 TBB_TRYBR -9.50E+001 -1.16E+003
1.42E+003 1.84E+003 -24 43475.69 45924.44 TBB_TRYCR -5.27E+002
-1.06E+003 1.56E+003 1.96E+003 -25 43396.83 45908.56 TBB_VENIN
-1.12E+003 -1.36E+003 3.10E+003 3.56E+003 -22 43549.74 46256.71
TBBX_HUMAN -1.07E+003 -1.20E+003 2.50E+003 2.97E+003 -24 43586.17
46372.26 TBB_YEAST -1.38E+003 -3.14E+002 3.25E+003 3.54E+003 -31
44568.68 47245.65 TBD_H U MAN -2.52E+002 -1.29E+003 3.67E+002 1.36E+003
-5 44650.69 45579.63 TBE_HUMAN 5.31E+002 -4.99E+002 4.47E+002 8.55E+002
-6 TBG1_HUMAN 7.16E+002 -1.58E+003 -6.03E+002 1.84E+003 -10 44645.36
45231.14 TBG1 _MAIZE 8.07E+002 -1.90E+003 -3.86E+002 2.10E+003 -10
46058.94 46110.79 TBG1 _MOUSE 5.56E+002 -1.71E+003 -8.73E+002 2.00E+003
-11 44751.95 45706.51 TBG2_ARATH 1.46E+003 -2.04E+003 5.26E+002
2.56E+003 -10 46598.89 47773.51 TBG2_DROM E 8.15E+002 -1.58E+003
-8.50E+002 1.97E+003 -6 44800.18 45401.53 TBG2_EU PCR 3.78E+002
-1.86E+003 -7.45E+002 2.04E+003 -15 45632.97 46882.17 TBG2_EUPOC
4.42E+001 -2.22E+003 -3.12E+002 2.24E+003 -10 45771.97 47628.98
TBG2_HUMAN 5.46E+002 -1.57E+003 -3.46E+002 1.70E+003 -13 44707.12
45746.7 TBG2_MAIZE 4.62E+002 -1.85E+003 -5.21E+002 1.98E+003 -12
TBG2_MOUSE 3.57E+002 -1.22E+003 -6.91E+002 1.45E+003 -10 44770.54
45966.96 TBG2_ORYSA 7.37E+002 -1.71E+003 -6.59E+002 1.97E+003 -12
46151.43 46463.29 42200.31 TBG3_MAIZE 7.36E+002 -1.95E+003 -1.05E+002
2.09E+003 -9 41586.56 F TBG_ANEPH 1.48E+003 -2.35E+003 3.46E+002
2.79E+003 -9 46391.54 47490.67 TBG_CAEEL 3.04E+002 -1.06E+003
-8.91E+002 1.42E+003 -9 43944.74 45972.73 TBG_CANAL 1.34E+003
-1.39E+003 1.90E+003 2.71E+003 -23 TBG_CHLRE 7.24E+002 -1.85E+003
-3.37E+002 2.02E+003 -6 45684.61 46543.6 27657.99 TBG_COCHE 4.43E+002
-8.17E+002 -5.81E+002 1.10E+003 -2 26054.95 F TBG_EMENI 7.59E+002
-1.72E+003 -7.19E+002 2.01E+003 -9 44602.99 46275.01 TBG_ENTHI
1.65E+002 -9.20E+002 -8.38E+002 1.26E+003 -6 45398.09 46350.19
TBG_EUPAE 7.82E+002 -1.99E+003 -3.07E+002 2.16E+003 -10 45766.71
47108.63 TBG_NEUCR 5.63E+002 -1.98E+003 -3.09E+002 2.08E+003 -9
45255.26 46777.78 TBG_PHYPA 1.25E+003 -2.49E+003 2.51E+001 2.78E+003 -8
46549.14 47781.9 TBG_PLAFO 6.66E+002 -2.18E+003 -7.53E+002 2.40E+003 -7
45179.34 46542.13 TBG_RETFI 1.16E+003 -1.59E+003 -5.16E+002 2.04E+003
-4 47100.48 48598.68
TBG_SCHJP 1.95E+000 -1.81E+003 -6.21E+002 1.91E+003 -7 44087.45
45523.53 TBG_SCHPO 3.32E+002 -1.54E+003 -3.58E+002 1.62E+003 -8
43930.03 45423.04 TBG_USTVI 7.32E+002 -1.61E+003 -8.74E+002 1.97E+003
-10 45915.36 47039.01 TBG_XENLA 8.58E+002 -1.48E+003 -8.55E+002
1.91E+003 -9 44698.46 45367.78 TBG_YEAST 9.08E+002 -1.50E+003 1.31E+003
2.19E+003 -30 45777.95 47349.09
[0074] As is also disclosed in the Tuszynski paper, "FIG. 1a
shows a scatter diagram of the net/charge/volume ratios of the
different tubulins. This plot is striking in that the net charge on the
beta-tubulins is bar far the greatest, ranging between -17 and -32
elementary charges (e) depending upon the particular beta-tubulin with
an average value in this case at approximately -25 e. Next comes the
alpha-tubulins whose net charges vary between -10 and 1-25 elementary
charges . . . . There appears to be little if any correlation between
the size of a protein and its charge . . . . Further, it should be kept
in mind, that the charge on a tubulin dimmer will be neutralized in
solution due to the presence of counter-ions which almost completely
screen the net charge. This was experimentally determined for tubulin
by the application of an external electric field; the resulting value
of an unscreened charge of approximately 0.2 e per monomer was found
Stracke et al. 2002." The reference to Stracke et al. was to an article
by R. Stracke, J. A. Tuszynski, et al. regarding "Analysis of the
migration behaviour of single microtubules in electric fields,"
Biochemical and Biophysical Research Communications, 293:606-609, 2002.
[0075] As is also disclosed in the Tuszynski paper, "What is,
however, of great interest in connection with polymerization of tubulin
into microtubules and with drug-protein binding is the actual
distribution of charges on the surface of the tublin. FIG. 3
illustrates this for the Downing-Nogales structure with plus signs
indicating the regions of positively charged and minus signs negatively
charged locations. This figure shows C-termini in two very upright
positions. Of course, each of the different tubulins will show
differences in this regard . . . ."
[0076] As is also disclosed in the Tuszynski paper, " . . .
alpha tubulins have relatively low dipole moments about their
centres-of-mass, ranging between 1000 and 2000 Debye, while the
beta-tubulins are very high in this regard with the corresponding
values ranging between 1000 and 4000 Debye and with the average value
close to 3000 Debye . . . . In FIG. 2 we have illustrated the important
aspect of dipole organization for tubulin, namely its orientation. FIG.
2a shows a Mollweide projection of dipole orientation in tubulin . . .
. We conclude from this diagram and its magnification . . . that both
alpha- and beta-tubulins orient their dipose moments in a direction
that is close to being perpendicular to the microtubule surface . . .
."
[0077] As is also disclosed in the Tuszynski paper, "FIG. 1c
shows the logarithm of surface area against the logarithm of volume for
the different tubulins . . . . Note that the alpha and beta families
have a very similar slope with a value close to the unity that is
indicative of cylindrical symmetry in the overall geometry . . . ."
[0078] As is also disclosed in the Tuszynski paper, "Our models
show that only alpha- and beta-tubulins have C-termini that project
outwards from the tubulin, due to their high negative charges. FIG. 5
shows the energy levels of different orientational positons of the
C-termini in a toy model and suggests that there is relatively little
energetic difference between projecting straight outward from the rest
of the tublin and lying on the surface of tubulin in certain energy
minima . . . ."
[0079] As is also disclosed in the Tuszynski et al. paper,
"Isotype composition has a demonstrable effect on microtubule assembly
kinetics (Panda et al., 1994)." The Panda et al. reference was an
article by D. Panda et al. on "Microtubule dynamics in vitro are
regulated by the tubulin isotype composition," Proc. Natl. Acad. Sci.
USA 91: 11 358-11 362, 1994.
[0080] As is also disclosed in the Tuszynski paper, "This could
be due to changes in the electrostatics of tubulin, which although
significantly screened by counter-ions does affect microtubule assembly
by influencing dimer-dimer interactions over relatively short distances
(approximately 5 nm) as well as the kinetics of assembly. These
short-range interactions have recently been studied by Sept et al.
(2003) by calculating the energy of protofilament-protofilament
interactions. These authors concluded from their work that the two
types of microtubule lattices (A and B) correspond to the local energy
minima." The Sept et al. reference was to an article by D. Sept et al.,
"The physical basis of microtubule structure and stability," Protein
Science, 12:2257-2261, 2003.
[0081] As is also disclosed in the Tuszynski paper, "The dipole
moment could play a role in microtubule assembly and in other
processes. This could be instrumental in the docking process of
molecules to tubulin and in the proper steric configuration of a
tubulin dimer as it approaches a microtubule for binding. An isolated
dimer has an electric field dominated by its net charge . . . . In
contrast, a tubulin dimer . . . surrounded by water molecules and
counter-ions, as is physiologically relevant, has an isopotential
surface with two lobes much like the dumbbell shape of a mathematically
dipole moment. The greater the dipole of each of its units is, the less
stable the microtubule since dipole-dipole interactions provide a
positive energy disfavoring a microtubule structure. Note that the
strength of the interaction potential is proportional to the square of
the dipole moment, hence microtubule structures formed from tubulin
units with larger dipoles momements should be more prone to undergo
disassembly catastrophes compared to those microtubes that contain low
dipole moment tubulins. For organisms that express more than one type
of tubulin isotype in the same cell, one can conceive that microtubule
dynamic behavior could be regulated by altering the relative amounts of
the different isotypes according to their dipole moments."
[0082] As is also disclosed in the Tuszynski paper, "In terms
of surface/volume ratios, .alpha.- and .beta.-tubulin are the least
compact, while .gamma., .delta. and .epsilon. are the most compact.
There is abundant evidence that both .alpha.and .beta. have flexible
conformations. This is attested to by their interaction with drugs and
is consistent with the dynamic instability of microtubules. In
contrast, there is as yet no evidence of dynamic instability in
.gamma., .delta. and .epsilon. partcipating in dynamic instability, nor
is there any theoretical reason to imagine such flexibility. It is
reasonable to postulate that a less compact structure may have a more
flexible conformation."
[0083] As is also disclosed in the Tuszynski et al. paper, "Our
models predict that the C-termini of .alpha. and .beta. can readily
adopt the two extreme conformations: either projecting outwards from
the tubulin (and the microtubule surface) or to lie on the surface,
albeit such that their charged residues can form electrostatic bonds
with complimentary charges on the surface. The state of the C-terminus
(upright, down, or in intermediate states) down) is easily influenced
by the local ion concentration including pH. This conformational
complexity has many implications (Pal et al., 2001)." The Pal et al.
reference is an article by D. Pal et al. on "Conformational properties
of alpha-tubulin tail peptide: implications for tail-body interaction,"
Biochemistry, 40: 15 512-15 519, 2001.
[0084] As is also disclosed in the Tuszynski paper, "First, a
projecting C-terminus could play a major role in signaling. The fact
that tubulin isotypes differ markedly in the C-termini suggests that
specific sequences may mediate the functional roles of the isotypes.
These sequences would be readily available for interactions with other
proteins in a projecting C-terminus. Second, the C-termini are the
sites of many of the post-translational modifications of
tubulin--polyglutamylation, polyglycylation,
detyrosinolation/tyrosinolation, removal of the penultimate glutamic
acid, and phosphorylation of serine and tyrosine (Redeker et al.,
1998)." The Redeker et al. reference was an article by V. Redekere et
al. on "Posttranslational modifications of the C-terminus of
alpha-tubulin in adult rat brain: alpha 4 is glutamylated at two
residues," Biochemistry, 37: 14 838-14 844, 1998.
[0085] As is also disclosed in the Tuszynski paper, "It is
known that the C-termini are essential to normal microtubule function
(Duan and Gorovsky, 2002); a projecting C-terminus would be easily
accessible to enzymes that affect these modifications and also the
modification could influence the likelihood of the C-terminus changing
conformation. In addition, if the modification plays a role in
signaling then the signal would be readily available in a projecting
C-terminus, as already mentioned." The reference to Duan and Gorovsky
is to an article by J. Duan et al., "Both carboxy-termianl tails of
alpha- and beta-tubulin are essential, but either one will suffice,"
Current Biology, 12:313-316, 2002.
[0086] As is also disclosed in the Tuszynski et al. paper,
"Third, projecting C-termini would automatically create spacing between
microtubules. It is known that microtubules are never closely packed
and are surrounded by what is referred to as an exclusion zone (Dustin,
1984)." The reference to Dustin is to a book by P. Dustin on
"Microtubules (Springer-Verlag, Berlin, 1984).
[0087] As is also disclosed in the Tuszynski paper, "This is a
region of space around them that strongly disfavors the presence of
other microtubules in the vicinity. Although MAPs could play a role in
such spacing, electrostatic repulsion among C-terminal ends are likely
to influence this as well. The C-termini are the major sites of binding
of the MAPs to tubulin. A projecting C-terminus may facilitate MAP
binding and, conversely, MAP binding could influence the conformation
of the C-terminus. Evidence for this is provided by the work of
Makridis et al who showed that when tau binds to microtubules, it
triggers a structural change on the microtubule surface whereby a
structural element, presumably tau, lies along the surface of the
microtubule forming a lattice whose alingement angle is much sharper
than that of the tubulin subunits. This lattice is presumably
superimposed on top of the normal microtubule (A or B) lattice. The
orientation of the C-termini when they are lying on the surface of the
microtubule form exactly the same kind of lattice that (Makridis et al,
2003) observed, a striking confirmation of the potential accuracy of
our modeling . . . . These results raise the possibility that the
orientation of the C-termini of the alpha and beta subunits determines
the arrangement of tau molecules on the microtubule." The Makrides
reference referred to is an article by V. Markrides et al.,
"Microtubule-dependent oligomerization of tau: Implicatons for
physiological tau function and tauopathies," J. Biol. Chem., 278:33
298-33 304, 2003.
[0088] As is also disclosed in the Tuszynski et al. paper, " .
. . the state of the C-termini could mediate how motor proteins such as
kinesin bind to and move on microtubules. Our models show that kinesin
can only bind to upright C-termini . . . and not to C-termini lying on
the surface of the microtubule . . . . Very minor changes in the local
ionic environment or the pH could halt the progress of kinesin by
collapsing the C-termini. One can postulate that the proportion of
C-termini that are in the upright conformation in a given portion of
the microtubule could determine the actual rate of kinesin movement. It
is likely that such arguments could apply to other motor proteins as
well. One might imagine that the very fine coordination of movements
that occur in processes such as mitosis could be influenced or even
caused by the conformational state of the C-termini in particular areas
of the microtubule."
[0089] As is also disclosed in the Tuszynski paper, "Finally,
one can imagine that the C-termini could collapse in waves that could
simultaneously move a wave of ions that could polarize or depolarize a
membrane. This could be a form of microtubule signaling that has not
yet been considered. A quantitative model of ionic wave transmission
coupled to co-ordinated motion of the C-termini of dendritic
microtubules has been recently developed by Priel et al . . . ." The
reference to Priel et al. was to an article by A. Priel et al. entitled
"Molecular Dynamics of C-termini in Tubulin: Implications for Transport
to Active Synapsis," submitted to Biophys. J., 2003.
[0090] Table 1 of the Tuszynksi paper disclosed the tubulin
sequences used in the study reported in the article. In such Table 1,
the table names the names the source organism, and for each .alpha.,
.beta., .gamma., .delta., and .epsilon., gives the name used in the
databank.
The Use of Particular Models of Isotypes of Tubulin for Drug
Development
[0091] In one embodiment of the invention, once a particular
tubulin isotype has been identified as being of interest, and once a
three-dimensional model of it has been made in accordance with the
process of this invention, this model may then be used to identify
which drug or drugs would most advantageously interact with the binding
sites of the tubulin isotype in question.
[0092] The preferred binding sites which may be used in the
process of identifying the candidate drugs are discussed in the next
section of this specification.
Preferred Binding Sites of Tubulin Isotypes
[0093] It is known that many chemotherapeutic drugs effect
their primary actions by inhibiting tubulin polymerization. Thus, as is
disclosed in U.S. Pat. No. 6,162,930 (the entire disclosure of which is
hereby incorporated by reference into this specification), "An
aggressive chemotherapeutic strategy toward the treatment and
maintenance of solid-tumor cancers continues to rely on the development
of architecturally new and biologically more potent anti-tumor,
anti-mitotic agents. A variety of clinically-promising compounds which
demonstrate potent cytotoxic and anti-tumor activity are known to
effect their primary mode of action through an efficient inhibition of
tubulin polymerization (Gerwick et al.). This class of compounds
undergoes an initial binding interaction to the ubiquitous protein
tubulin which in turn arrests the ability of tubulin to polymerize into
microtubules which are essential components for cell maintenance and
cell division (Owellen et al.)."
[0094] U.S. Pat. No. 6,162,930 also discloses that the precise
means by which the cytotoxic agents " . . . arrests the ability of
tubulin to polymerize . . . " is unknown, stating that: "Currently the
most recognized and clinically useful tubulin polymerization inhibitors
for the treatment of cancer are vinblastine and vincristine (Lavielle,
et al.). Additionally, the natural products rhizoxin (Nakada, et al.,
1993a and 1993b; Boger et al.; Rao et al., 1992 and 1993; Kobayashi et
al., 1992 and 1993) combretastin A-4 and A-2 (Lin et al.; Pettit, et
al., 1982, 1985, and 1987) and taxol (Kingston et al.; Schiff et al;
Swindell, et a, 1991; Parness, et al.) as well as certain synthetic
analogues including the 2-styrylquinazolin-4(3H)-ones (SQO) (Jiang et
al.) and highly oxygenated derivatives of cis- and trans-stilbene
(Cushman et al.) and dihydrostilbene are all known to mediate their
cytotoxic activity through a binding interaction with tubulin. The
exact nature of this interaction remains unknown and most likely varies
somewhat between the series of compounds."
[0095] U.S. Pat. No. 6,512,003 also discusses the " . . .
nature of this unknown interaction . . . ," stating that (at column 1)
"Novel tubulin-binding molecules, which, upon binding to tubulin,
interfere with tubulin polymerization, can provide novel agents for the
inhibition of cellular proliferation and treatment of cancer." U.S.
Pat. No. 6,512,003 presents a general discussion of the role of tubulin
in cellular proliferation, disclosing (also at colum1) that: Cellular
proliferation, for example, in cancer and other cell proliferative
disorders, occurs as a result of cell division, or mitosis.
Microtubules play a pivotal role in mitotic spindle assembly and cell
division . . . . These cytoskeletal elements are formed by the
self-association of the ad tubulin heterodimers . . . . Agents which
induce depolymerization of tubulin and/or inhibit the polymerization of
tubulin provide a therapeutic approach to the treatment of cell
proliferation disorders such as cancer. Recently, the structure of the
.alpha..beta. tubulin dimer was resolved by electron crystallography of
zinc-induced tubulin sheets . . . . According to the reported atomic
model, each 46.times.40.times.65 .ANG tubulin monomer is made up of a
205 amino acid N-terminal GTP/GDP binding domain with a Rossman fold
topology typical for nucleotide-binding proteins, a 180 amino acid
intermediate domain comprised of a mixed .beta. sheet and five helices
which contain the taxol binding site, and a predominantly helical
C-terminal domain implicated in binding of microtubule-associated
protein (MAP) and motor proteins . . . ."
[0096] U.S. Pat. No. 6,512,003 also teaches that the binding
site of vinca alkaloids to tubulin differs from the binding site of
colchicin to tublin, stating (also at column 1) that: "Spongistatin
(SP) . . . is a potent tubulin depolymerizing natural product isolated
from an Eastern Indian Ocean sponge in the genus Spongia . . .
Spongistatins are 32-membered macrocyclic lactone compounds with a
spongipyran ring system containing 4 pyran-type rings incorporated into
two spiro[5.5]ketal moieties . . . . In cytotoxicity assays,
spongistatin (SP) exhibited potent cytotoxicity with subnanomolar IC50
values against an NCI panel of 60 human cancer cell lines . . . . SP
was found to inhibit the binding of vinc alkaloids (but not colchicin)
to tubulin . . . , indicating that the binding site for this potent
tubulin depolymerizing agent may also serve as a binding region for
vinc alkaloids."
[0097] U.S. Pat. No. 6,593,374, the entire disclosure of which
is hereby incorporated by reference into this specification, presents a
"working hypothesis" that the " . . . methoxy aryl functionality . . .
" is especially important for binding at the colchicin binding site. It
discloses (at columns 1-2 thereof) that: "An important aspect of this
work requires a detailed understanding, on the molecular level, of the
`small molecule` binding domain of both the alpha. and .beta. subunits
of tubulin. The tertiary structure of the .alpha., .beta. tubulin
heterodimer was reported in 1998 by Downing and co-workers at a
resolution of 3.7 .ANG. using a technique known as electron
crystallography . . . . This brilliant accomplishment culminates
decades of work directed toward the elucidation of this structure and
should facilitate the identification of small molecule binding sites,
such as the colchicine site, through techniques such as photoaffinity
and chemical affinity labeling . . . . We have developed a working
hypothesis suggesting that the discovery of new antimitotic agents may
result from the judicious combination of a molecular template
(scaffold) which in appropriately substituted form (ie. phenolic
moieties, etc.) interacts with estrogen receptor (ER), suitably
modified with structural features deemed imperative for tubulin binding
(arylalkoxy groups, certain halogen substitutions, etc.). The methoxy
aryl functionality seems especially important for increased interaction
at the colchicine binding site in certain analogs . . . . Upon
formulation of this hypothesis concerning ER molecular templates, our
initial design and synthesis efforts centered on benzo[b]thiophene
ligands modeled after raloxifene, the selective estrogen receptor
modulator (SERM) developed by Eli Lilly and Co . . . . Our initial
studies resulted in the preparation of a very active
benzo[b]thiophene-based antitubulin agent . . . . In further support of
our hypothesis, recent studies have shown that certain estrogen
receptor (ER) binding compounds as structurally modified estradiol
congeners (2-methoxyestradiol, for example) interact with tubulin and
inhibit tubulin polymerization . . . . Estradiol is, of course, perhaps
the most important estrogen in humans, and it is intriguing and
instructive that the addition of the methoxy aryl motif to this
compound makes it interactive with tubulin. It is also noteworthy that
2-methoxyestradiol is a natural mammalian metabolite of estradiol and
may play a cell growth regulatory role especially prominent during
pregnancy. The term `phenolic moiety` means herein a hydroxy group when
it refers to an R group on an aryl ring."
[0098] As is also disclosed in U.S. Pat. No. 6,593,374 (at
column 1 thereof), "Tubulin is currently among the most attractive
therapeutic targets in new drug design for the treatment of solid
tumors. The heralded success of vincristine and taxol along with the
promise of combretastatin A-4 (CSA-4) prodrug and dolastatin . . . to
name just a few, have firmly established the clinical efficacy of these
antimitotic agents for cancer treatment. An aggressive chemotherapeutic
strategy toward the treatment and maintenance of solid-tumor cancers
continues to rely on the development of architecturally new and
biologically more potent anti-tumor, anti-mitotic agents which mediate
their effect through a direct binding interaction with tubulin. A
variety of clinically-promising compounds which demonstrate potent
cytotoxicity and antitumor activity are known to effect their primary
mode of action through an efficient inhibition of tubulin
polymerization . . . . This class of compounds undergoes an initial
interaction (binding) to the ubiquitous protein tubulin which in turn
arrests the ability of tubulin to polymerize into microtubules which
are essential components for cell maintenance and division . . . .
During metaphase of the cell cycle, the nuclear membrane has broken
down and the cytoskeletal protein tubulin is able to form centrosomes
(also called microtubule organizing centers) and through polymerization
and depolymerization of tubulin the dividing chromosomes are separated.
Currently, the most recognized and clinically useful members of this
class of antimitotic, antitumor agents are vinblastine and vincristine
. . . along with taxol . . . . Additionally, the natural products
rhizoxin, . . . combretastatin A-4 and A-2, . . . curacin A, . . .
podophyllotoxin, . . . epothilones A and B, . . . dolastatin 10 . . .
and welwistatin . . . (to name just a few) as well as certain synthetic
analogues including phenstatin, . . . the 2-styrylquinazolin-4(3H)-ones
(SQO), . . . and highly oxygenated derivatives of cis- and
trans-stilbene . . . and dihydrostilbene are all known to mediate their
cytotoxic activity through a binding interaction with tubulin. The
exact nature of this binding site interaction remains largely unknown,
and definitely varies between the series of compounds."
[0099] Published United States patent application 2004/0044059,
the entire disclosure of which is hereby incorporated by reference into
this specification, also discloses the uncertainty that exists with
regard to the " . . . tubulin binding site interactions . . . " At page
1 thereof, it states that: "The exact nature of tubulin binding site
interactions remain largely unknown, and they definitely vary between
each class of Tubulin Binding Agent. Photoaffinity labeling and other
binding site elucidation techniques have identified three key binding
sites on tubulin: 1) the Colchicine site (Floyd et al, Biochemistry,
1989; Staretz et al, J. Org. Chem., 1993; Williams et al, J. Biol.
Chem., 1985; Wolff et al, Proc. Natl. Acad. Sci. U.S.A., 1991),2) the
Vinca Alkaloid site (Safa et al, Biochemistry, 1987), and 3) a site on
the polymerized microtubule to which taxol binds (Rao et al, J. Natl.
Cancer Inst., 1992; Lin et al, Biochemistry, 1989; Sawada et al,
Bioconjugate Chem, 1993; Sawada et al, Biochem. Biophys. Res. Commun.,
1991; Sawada et al, Biochem. Pharmacol., 1993). An important aspect of
this work requires a detailed understanding, at the molecular level, of
the `small molecule` binding domain of both the .alpha. and .beta.
subunits of tubulin. The tertiary structure of the .alpha.,.beta.
tubulin heterodimer was reported in 1998 by Downing and co-workers at a
resolution of 3.7 using a technique known as electron crystallography
(Nogales et al, Nature, 1998). This brilliant accomplishment culminates
decades of work directed toward the elucidation of this structure and
should facilitate the identification of small molecule binding sites,
such as the colchicine site, using techniques such as photoaffinity and
chemical affinity labeling (Chavan et al, Bioconjugate Chem., 1993;
Hahn et al, Photochem. Photobiol., 1992)."
[0100] As is also disclosed in published United States patent
application 2004/0044059, "The cytoskeletal protein tubulin is among
the most attractive therapeutic drug targets for the treatment of solid
tumors. A particularly successful class of chemotherapeutics mediates
its anti-tumor effect through a direct binding interaction with
tubulin. This clinically-promising class of therapeutics, called
Tubulin Binding Agents, exhibit potent tumor cell cytotoxicity by
efficiently inhibiting the polymerization of .alpha..beta.-tubulin
heterodimers into the microtubule structures that are required for
facilitation of mitosis or cell division (Hamel, Medicinal Research
Reviews, 1996) . . . . Currently, the most recognized and clinically
useful antitumor agents are Vinca Alkaloids, such as Vinblastine and
Vincristine (Owellen et al, Cancer Res., 1976; Lavielle et al, J. Med.
Chem., 1991) along with Taxanes such Taxol (Kingston, J. Nat. Prod.,
1990; Schiff et al, Nature, 1979; Swindell et al, J. Cell Biol., 1981).
Additionally, natural products such as Rhizoxin (Nakada et al,
Tetrahedron Lett., 1993; Boger et al, J. Org. Chem., 1992; Rao, et al,
Tetrahedron Lett., 1992; Kobayashi et al, Pure Appl. Chem., 1992;
Kobayashi et al, Indian J. Chem., 1993; Rao et al, Tetrahedron Lett.,
1993), the Combretastatins (Lin et al, Biochemistry, 1989; Pettit et
al, J. Nat. Prod., 1987; Pettit et al, J. Org. Chem., 1985; Pettit et
al, Can. J. Chem., 1982; Dorr et al, Invest. New Drugs, 1996), Curacin
A (Gerwick et al, J. Org. Chem., 59:1243, 1994), Podophyllotoxin
(Hammonds et al, J. Med. Microbiol, 1996; Coretese et al, J. Biol.
Chem., 1977), Epothilones A and B (Nicolau et al., Nature, 1997),
Dolastatin-10 (Pettit et al, J. Am. Chem. Soc., 1987; Pettit et al,
Anti-Cancer Drug Des., 1998), and Welwistatin (Zhang et al, Molecular
Pharmacology, 1996), as well as certain synthetic analogues including
Phenstatin (Pettit G R et al., J. Med. Chem., 1998),
2-styrylquinazolin-4(3H)-ones ("SQOs", Jiang et al, J. Med. Chem.,
1990), and highly oxygenated derivatives of cis- and trans-stilbene and
dihydrostilbene (Cushman et al, J. Med. Chem., 1991) are all known to
mediate their tumor cytotoxic activity through tubulin binding and
subsequent inhibition of mitosis."
[0101] As is also disclosed in published United States patent
application 2004/0044059, "Normally, during the metaphase of cell
mitosis, the nuclear membrane has broken down and tubulin is able to
form centrosomes (also called microtubule organizing centers) which
facilitate the formation of a microtubule spindle apparatus to which
the dividing chromosomes become attached. Subsequent polymerization and
depolymerization of the spindle apparatus mitigates the separation of
the daughter chromosomes during anaphase such that each daughter cell
contains a full complement of chromosomes. As antiproliferatives or
antimitotic agents, Tubulin Binding Agents exploit the relatively rapid
mitosis that occurs in proliferating tumor cells. By binding to tubulin
and inhibiting the formation of the spindle apparatus in a tumor cell,
the Tubulin Binding Agent can cause significant tumor cell cytotoxicity
with relatively minor effects on the slowly-dividing normal cells of
the patient."
[0102] An article by Mary Ann Jordan et al., entitled
"Microtubules as a target for anticancer drugs," appeared in Nature
Reviews/Cancer, Volume 4, April 2004, pages 253-266. At page 253 of
this article, it was disclosed that: "Microtubles are extremely
important in the process of mitosis . . . . Their importance in mitosis
and cell division makes microtubles an important target for anticancer
drugs. Microtubules and their dynamics are the targets of a chemically
diverse group of antimitotic drugs (with various tubulin-binding sites)
that have been used with great success in the treatment of cancer . . .
. In view of the success of this class of drugs, it has been argued
that microtubules represent the best cancer target to be identified so
far . . . ."
[0103] The polymerization dynamics of microtubules are
discussed at pages 254 et seq. of the Jordan paper, wherein it is
disclosed that: "The polymerization if microtubules occurs by a
nucleation-elongation mechanism in which the relatively slow formation
of a short microtubule `nucleus` is followed by rapid elongation of the
microtubule at its ends by the reversible, non-covalent addition of
tubulin dimers . . . . It is important to emphasize that microtubues
are not simple equilibrium polymers. The show complex polymerization
dynamics that use energy provided by the hydrolysis of GTP at the time
that tubulin with bound GTP adds to the microtubule ends; these
dynamics are crucial to their cellular functions."
[0104] The Jordan et al. article also discloses that: " . . .
the correct movements of the chromosomes and their proper segregation
to daughter cells require extremely rapid dynamics, making mitosis
exquisitely sensitive to microtubule-targeted drugs."
[0105] The Jordan et al. article also discloses that: "The
biological functions of microtubules in all cells are determined and
regulated in large part by their polymerization dynamics . . . .
Microtubules show two kinds of non-equilibrium dynamics, both with
purified microtubule systems in vitro and in cells."
[0106] The Jordan et al. article also discloses (at page 257,
"Box 1") how one may measure microtubule dynamic instability. It states
that: "With purified microtubules in vitro (generally purified from
pig, cow, or sheep brains, which are a rich source of microtubules),
dynamic instability of individual microtubules is measured by
computer-enhanced time-lapse differential interference contrast
microscopy. In living cells, individual fluorescent microtubules can be
readily visualized in the thin peripheral regions of the cells after
microinjection of fluorescent tubulin or by expression of GFP (green
fluorescent protein) labeled tubulin. The growing and shortening
dynamics of the microtubules, which are prominent in this region of
interphase cells, are recorded by time-lapse using a sensitive CCD
(charge-coupled device) camera. To determine how microtubule length
changes with time, both in vitro and in living cells, the ends of the
individual growing and shortening microtubules are traced by a cursor
on succeeding time-lapse frames, recorded, and their rates, lengths,
and durations of growing and shortening are calculated from the
sequence of record x-=y positons of the microtubule ends."
[0107] The "dynamic instability" phenomenon is discussed at
page 254 of the Jordan et al. article, wherein it is disclosed that:
"One kind of dynamic behavior that is highly prominent in cells, called
`dynamic instability,` is a process in which the individual microtubule
ends switch between phases of growth and shortening . . . . The two
ends of a microtubule are not equivalent: one end, called the plus end,
grows and shortens more rapidly and more extensively than the other
(the minus end).The microtubules undergo relatively long periods of
slow lengthening, brief periods of rapid shortening, and periods of
attenuated dynamics or pause, when the microtubules neither grow nor
shorten detectably . . . . Dynamic instability is characterized by four
main variables: the rate of microtubule growth; the rate of shortening;
the frequency of transition from the growth or paused state to
shortening (this transition is called a `catastrophe`); and the
frequency of transition from shortening to growth or pause (called a
`rescue`). Periods of pause are defined operationally, when any changes
in microtubule length that might be occurring are below the resolution
of the light microscope. The variable called `dynamicity` is highly
useful to describe the overall visually detectable rate of exchange of
tubulin dimmers with microtubule ends."
[0108] The Jordan et al. article also discloses that: "The
second dynamic behavior, called `treadmilling` . . . is net growth at
one microtubule end and balanced net shortening at the opposite end . .
. . It involves the intrinsic flow of tubulin subunits from the plus
end of the microtubule to the minus end and is created by differences
in the critical subunit concentrations at the opposite microtubule
ends. (The critical subunit concentrations are the concentrations of
the free tubulin subunits in equilibrium with the microtubule ends.).
This behavior occurs in cells as well as in vitro and might be
particularly important in mitosis . . . . Treadmilling and dynamic
instability are compatible behaviours, and a specific microtubule
population can show primary treadmilling behavior, dynamic instability
behaviour, or some mixture of both. The mechanisms that control one or
the other behavior are poorly understood but probably involve the
tubulin isotype composition of the microtubule population, the degree
of post-translational modification of tubulin, and, especially, the
actions of regulatory proteins." Applicants believe that, by causing
the combination of one or more particular tubulin isotypes with a
candidate therapeutic agent, one may affect the treadmilling behaviour
and/or the dynamic instability behaviour of the microtubules which
comprise the tubulin isotype." In particular, they believe that the
magnetic anti-mitotic compound of their invention affects the
treadmilling behavior and/or the dynamic instability behavior of
microtubules.
[0109] As is disclosed on page 263 of the Jordan et al.
article, a comprehensive review of tubulin isotypes and
post-translational modifications is presented in an article by R. F.
Luduena, "Multiple forms of tubulin: different gene products and
covalent modifications," Int. Rev. Cytology, 170: 207-275 (1998). The
Jordan et al. article also refers to a work by P. Verdier-Pinard et
al., "Direct analysis of tubulin expression in cancer cell lines by
electrospray ionization mass spectrometery," Biochemistry, 42:
12019-12027 (2003). According to the Jordan et al. article, "The
Verdier-Pinard et al. article describes analyses of tubulin isotypes,
mutations, and post-translational modifications by liquid
chromatography/electrospray-ionization mass spectrometry in
paclitaxel-sensitive and resistant cell lines."
[0110] Referring again to the Jordan et al. article, it is
disclosed that: "Dynamic instability and treadmilling behaviours can
both be observed with purified microtubules in vitro. However, the rate
and extent of both treadmilling and dynamic instability are relatively
slow with purified microtubules compared with rates in cells. It is
clear that microtubule dynamics in cells are regulated by a host of
mechanisms: cells can alter their expression levels of 13 tubulin
isotypes; they can alter their levels of tubulin post-translational
modifications; they can express mutated tubulin; and they can alter the
expression and phosphorylation levels of microtubule-regulatory
proteins . . . that interact with the microtubule surfaces and ends.
Although microtubule dynamics can be modulated by the interaction of
regulatory molecules with soluble tubulin itself, the assembled
microtubule is likely to the primary target of cellular molecules that
regulate microtubule dynamics. The many drugs that modulate microtubule
dynamics might be mimicking the actions of the numerous natural
regulators that control microtubule dynamics in cells." Applicants
believe that the magnetic anti-mitotic compound of their invention is
as effective as is paclitaxel in " . . . mimicking the actions of the
numerous natural regulators that control microtubule dynamics in cells
. . . ."
[0111] At page 255 of the Jordan et al. article, the authors
disclose that "Microtubule dynamics are crucial to mitosis . . . . With
the development of sophisticated methods for observing microtubule
dynamics in living cells, it is now possible to visualize the dynamics
of mitotic spindle microtubules. With these advances it has become
clear that microtubles in mitotic spindles have uniquely rapid dynamics
that are crucial to successful mitosis. During interphase, microtubules
turn over (exchange their tubulin with the soluble tubulin pool)
relatively slowly, with half-times that range from several minutes to
several hours . . . . The interphase microtubule network disassembles
at the onset of mitosis and is replaced by a new population of spindle
microtubules that are 4-100 times more dynamic than the microtubules in
the interphase cytoskeleton. Although there is variation among the
various spindle-microtubule subpopulations, mitotic-spindle
microtubules exchange their tubulin with tubulin in the soluble pool
rapidly with half-times on the order of 10-30 seconds . . . . At least
in some cells, the increase in dynamics seems to result from an
increase in the catastrophe frequency, and a reduction in the rescue
frequency rather than from changes in the inherent rate of growth and
shortening."
[0112] At page 256 of the Jordan et al. article, a "Table 1" is
presented regarding "Antimitotic drugs, their diverse binding sites on
tubulin and their stages of clinical development." As is disclosed in
such Table 1, one of the well-known binding domains on tubulin is the
"vinca domain."
[0113] One drug that binds at the vinca domain is Vinblastine
(Velban), which is used to treat Hodgkins disease and testicular germ
cell cancer. Reference may be had, e.g., to articles by G. C. Na et al.
("Thermodynamic linkage between tubulin self-association and the
binding of vinblastine," Biochemistry, 19: 1347-1354, 1980; and
"Stoichiometry of the vinblastine self-induced self-association of
calf-brain tubulin," Biochem. Soc. Trans., 8: 1347-1354, 1980), by S.
Lobert et al. (in Methods in Enzymology, Vol. 323, [ed. Johnson M.]
77-103 [Academic Press 2000]), and by A. Duflos et al. ("Novel aspects
of natural and modified vinca alkaloids," Curr. Med. Chem. Anti-Canc.
Agents, 2: 55-70, 2002).
[0114] Another drug that binds at the vinca domain is
Vincristine (Oncovin); it is used to treat leukemia and lymphomas.
Reference may be had, e.g., to works by G. L. Plosker et al.
("Rituximab: a review of its use in non-Hodgkins lymphoma and chronic
leukemia," Drugs, 63: 803-843, 2003), by A. B. Sandler ("Chemotherapy
for small cell lung cancer," Semin. Oncol., 30: 9-25, 2003), and by J.
O. Armitage et al. ("Overview of rational and individualized
therapeutic strategies for non-Hodgkin's lymphoma," Clin. Lymphoma, 3:
S5-S11, 2002).
[0115] Another drug that binds at the vinca domain is
Vinorelbine (Navelbine), which is used to treat sold tumors, lymphomas
and lung cancer. Reference may be had, e.g., to works by J. Jassem et
al. ("Oral vinorelbine in combination with cisplatin, a novel active
regimen in advanced non-small-cell lung cancer," Ann. Oncol. 14:
1634-1639, 2003), by A. Rossi et al. ("Single agent vinorelbine as
first-line chemotherapy in elderly patients with advanced breast
cancer," Anticancer Res., 23: 1657-1664, 2003), and by A. D. Seidman
("Monotherapy options in the management of metastatic breast cancer,"
Semin. Oncol., 30: 6-10, 2003).
[0116] Another drug that binds at the vinca domain is
Vinflunine, which is used to treat bladder cancer, non-small-cell lung
cancer, and breast cancer. Reference may be had to, e.g., the
aforementioned article by A. Duflos et al., and to an article by T.
Okouneva et al. on "The effects of vinflunine, vinorelbine, and
vinblastine on centromere dynamics," Cancer Ther., 2: 4.27-4.36, 2003.
[0117] Another drug that binds to the vinca domain is
cryptophycin 52, and it is used to treat solid tumors. Reference may be
had, e.g., to articles by D. Panda et al. ("Interaction of the
antitumor compound cryptophycin 52 with tubulin," Biochemistry, 39:
14121-14127, 2000), and by K. Kerksiek et al. ("Interaction of
cryptophycin with tubulin and microtubules," FEBS Lett., 377: 59-61,
1995).
[0118] A class of drugs that binds to the vinca domain of
tubulin is the halichondrins (such as, e.g., E7389). Reference may be
had, e.g., to articles by M. A. Jordan ("Mechanism of action of
antitumor drugs that interact with microtubules and tubulin," Curr.
Med. Chem Anti-Cancer. Agents, 2: 1-17, 2002), by R. B. Bai et al.
("Halichondrin B and homohalichondrin B, marine natural products
binding in the Vinca domain of tubulin. Discovery of tubulin-based
mechanism of action by analysis of differential cytotoxity data," J.
Biol. Chem., 266: 15882-15889, 1991), by R. F. Luduena et al.
("Interaction of halichondrin B and homohalichondrin B with bovine
brain tubulin," Biochem. Pharmcol., 45: 4.21-4.27, 1993), and by M. J.
Towle et al. (in vitro and in vivo anticancer activities of synthetic
macrocyclic ketone analogs of halichondrin B, Cancer Res., 61:
1013-1021, 2001).
[0119] Another class of drugs that bind to the vinca domain are
the dolastatins (such as TZT-1027), which are used as a vascular
targeting agent. Reference may be had, e.g., to an article by E. Hamel,
"Natural products which interact with tubulin in the Vinca domain:
maytarsine, rhizoxin, phomopsin A. Dolostatins 10 and 15 and
halichondrin B.," Pharmacol. Ther., 55:31-51, 1992.
[0120] Another class of drugs that bind to the vinca domain is
the hemiasterlins (such as HTI-286). Reference may be had, e.g., to
articles by R. Bai et al. ("Interactions of the sponge-derived
antimitotic antipeptide hemiasterin with tubulin: comparison with
dolastatin 10 and cryptophycin 1," Biochemistry, 38: 14302-14310,
1999), and by F. Loganzo et al. ("HTI-286, a synthetic analogue of the
tripeptide hemiasterin, is a potent antimicrotubule agent that
circumvents P-glycoprotein-mediated resistance in vitro and in vivo,"
Cancer Res., 63: 1838-1845, 2003).
[0121] Another of the binding sites mentioned in the 2004
Jordan et al. article (see Table 1) is the colchicine domain. One of
the drugs that binds in the colchicine domain is colchicine, and it is
used to treat non-neoplastic diseases such as gout and familial
Mediterranean fever. Reference may be had, e.g., to articles by S. B.
Hastie ("Interactions of colchicines with tubulin," Pharmacol. Ther.,
512: 377-401, 1991), and by D. Skoufias et al., "Mechanism of
inhibition of microtubule polymerization by colchicines inhibitory
potencies of unliganded colchicine and tubulin-colchicine complexes,"
Biochemistry, 31: 738-746, 1992.
[0122] The combretastatins (AVE8062A, CA-1-P, CA-4-P,
N-acetylcolchicinol-O-phosphate, ZD6126) are another class of drugs
that bind at the colchicines binding site. Reference may be had to
articles by G. M. Tozer et al. ("The biology of the combretastatins as
tumor vascular targeting agent," Int. J. Exp. Pathol., 83: 21-38,
2002), and by E. Harnel et al. ("Antitumor 2,3-dihydro-2-(aryl)-4(1H)
quinazolinone derivatives: interactions with tubulin," Biochem.
Pharmacol., 51: 53-59, 1996).
[0123] Another class of drugs that bind to the colchicines
domain is the methoxybenzene-sulphonamides (such as ABT-751, E7010,
etc.) that are used to treat solid tumors. Reference may be had, e.g.,
to an article by K. Yoshimatsu et al., "Mechanism of action of E7010,
an orally active sulfonamide antitumor agent: inhibition of mitosis by
binding to the colchicines site of tubulin," Cancer Res., 57:
3208-3213, 1997).
[0124] As is also disclosed in Table 1 of the 2004 M. A. Jordan
et al. article, the taxane site is another well known tubulin binding
site. Taxanes (such as paclitaxel) bind at this site and are used to
treat ovarian cancer, breast cancer, lung cancer, Kaposi's sarcoma, and
many other tumors. Reference may be had, e.g., to articles by S. B.
Horwitz ("How to make taxol from scratch," Nature, 367: 593-594, 1994),
by J. Manfredi et al. ("Taxol binds to cell microtubules," J. Cell.
Biol., 94: 688-696, 1982), by J. Parness et al. ("Taxol binds to
polymerized tubulin in vitro," J. Cell. Biol., 91: 479-487, 1981), and
by J. F. Diaz et al. ("Assembly of purified GDP-tubulin into
microtubules induced by taxol and taxotere: reversibility, ligand
stoichiochemistry, and competition," Biochemistry, 32: 2747-2755,
1993.).
[0125] Docetaxel (Taxotere) is another drug that binds to the
taxane site; and it is used to treat prostrate, brain, and lung tumors.
Reference may be had, e.g., to articles by C. P. Belani et al. ("TAX
326 Study Group: First-line chemotherapy for NSCLC: an overview of
relevant trials," Lung Cancer, 38 (Suppl. 4): 13-19, 2002), and by F.
V. Fosella et al. ("Second line chemotherapy for NSCLC: establishing a
gold standard," Lung Cancer, 38, 5-12, 2002).
[0126] The epothilones (such as BMS-247550, epothilones B and
D) are other drugs that bind to the taxane site; they are used to treat
paclitaxel-resistant tumors. References may be had, e.g., to articles
by D. M. Bolag et al. ("Epothilones: a new class of
microtubule-stabilizing agents with a taxol-like mechanism of action,"
Cancer Res., 55: 2325-2333, 1995), by M. Wartmann et al. ("The biology
and medicinal chemistry of epothilones," Curr. Med. Chem. Anti-Cancer
Agents, 2: 123-148, 2002), by F. Y. Lee et al. ("BMS-247550: a novel
epothilone analog with a mode of action similar to apcitaxel but
possessing superior antitumour efficacy," Clin. Cancer Res., 7:
1429-1437, 2001), and by K. Kamath et al. ("Suppression of microtubule
dynamics by epothilone B in living MCF7 cells," Cancer Res., 63:
6026-6031, 2003).
[0127] There are other microtubule binding sites disclosed in
Table 1 of the 2004 Jordan et al. publication. Thus, e.g., it is
disclosed that estramustine is used to treat prostrate cancer.
Reference may be had, e.g., to articles by D. Panda et al.
("Stabilization of microtubule dynamics by estramustine by binding to a
novel site in tubulin: a possible mechanistic basis for its antitumor
action," Proc. Nat. Acad. Sci USA94: 10560-10564, 1997), by O. Smaletz
et al. ("Pilot study of epothilone B analog [BMS-247550] and
estramustine phosphate in patients with progressive metastatic
prostrate cancer following castration," Ann. Oncol., 14: 1518-1524), by
W. Kelly et al. ("Dose escalation study of intraveneous extramustine
phosphate in combination with Paclitaxel and Carboplatin in patients
with advanced prostate cancer," Clin. Cancer Res. 9: 2098-2107, 2003),
by G. Hudes et al. ("Phase 1 clinical and pharmacologic trial of
intraveneous estramustine phosphate," J. Clin. Oncol., 20: 1115-1127,
2002), and by B. Dahllof et al. ("Estramustine depolymerizes
microtubules by binding to tubulin," Cancer Res. 53, 4573-4581, 1993).
[0128] Referring again to the Jordan et al. article, and at
page 256 thereof, the criticality of "highly dynamic microtubules" is
discussed. It is disclosed that: "Mitosis in most cells progresses
rapidly and the highly dynamic microtubules in the spindle are required
for all stages of mitosis. First, for the timely and correct attachment
of chromosomes at their kinetochoares to the spindle during
prometaphase after nuclear-envelope breakdown . . . . Second, for the
complex movements of the chromosomes that bring them to their properly
aligned positons at the metaphase plate . . . . Last, for the
synchronous separation of the chromosomes in anaphase and telophase
after the metaphase . . . . During prometaphase, microtubules emanating
from each of the two spindle poles make vast growing and shortening
excursions, essentially probing the cytoplasm until they `find` and
become attached to chromosomes at their kinetocores . . . . Such
microtubules must be able to grow for long distances . . . then shorten
almost completely, then re-grow again, until they successfully become
attached. The presence of a single chromosome that is unable to achieve
a bipolar attachment to the spindle is sufficient to prevent a cell
from transitioning to anaphase; the cell then remains blocked in a
prometaphase/metaphase like state and eventually undergoes apoptosis
(programmed cell death) . . . . We have found that suppression of
microtubule dynamics by drugs such as paclitaxel (Taxol) and Vinca
alkaloids seems to be a common mechanism by which these drugs block
mitosis and kill tumour cells. Human osterosarcoma cells after
incubation with . . . paclitaxel and . . . vinflunine are shown . . . .
Many chromosomes are stuck at the spindle poles, unable to congress to
the metaphase plate. At least one reason that cancer cells are
relatively sensitive to these drugs compared to normal cells is that
cancer cells divide more frequently than normal cells and therefore
frequently pass though a stage of vulnerability to mitotic poisons."
[0129] The anti-mitotic drugs may also interfere with
"oscillations." As is disclosed at page 257 of the Jordan et al.
article, "During metaphase in the absence of drugs . . . the duplicated
chromosomes, which are attached to the microtubules at their
kinetohores, oscillate back and forth under high tension in the spindle
equatorial region in concert with growth and shortening of the attached
microtubles . . . . Superimposed on these oscillations, tubulin is
continuously and rapidly added to microtubles at the kinetochores and
is lost at the poles in a balanced fashion (that is, the microtubules
treadmill) . . . . The oscillations are believed to be required for the
proper functioning of the spindle. The absence of tension on the
chromosomal kinetochores is also sufficient to block cell-cycle
progress from metaphase to anaphase . . . . In apanphase . . . ,
microtubules that are attached to chromosomes must undergo a carefully
regulated shortening at that same time that another proportion of
spindle microtubles (the interpolar microtubules) lengthens."
[0130] Anti-mitotic drugs interfere with these "microtubule
dynamics" in different ways. As is disclosed at page 257 of the Jordan
et al. article, " . . . a large number of chemically diverse substances
bind to soluble tubulin and/or directly to tubulin in the
microtubules." In one embodiment, the magnetic anti-mitotic drugs of
this invention bind directly to soluble tubulin. In another embodiment,
the magnetic anti-mitotic drugs of this invention bind to the
polymerized tubulin in the microtubules.
[0131] As is also disclosed in the Jordan et al. article, "Most
of these compounds are antimitotic agents and inhibit cell
proliferation by acting on the polymerization dynamics of spindle
microtubles, the rapid dynamics of which are essential to proper
spindle function." In one embodiment, the magnetic anti-mitotic
compounds of this invention act on the polymerization dynamics of the
spindle microtubules.
[0132] As is also disclosed in the Jordan et al. article, "The
specific effects of individual microtubule-targeted drugs on the
microtubule polymer mass and on the stability and dynamics of the
microtubules are complex. Microtubule-targeted antimitotic drugs are
usually classified into two main groups. One group, known as the
microtubule-destabilizing agents, inhibits microtubule polymerization
at high concentrations . . . ." In one embodiment, the magnetic
anti-mitotic compounds of this invention inhibit microtubule
polymerization at high concentrations.
[0133] As is also disclosed in the Jordan et al. article, "The
second main group is known as the microtubule stabilizing agents. These
agents stimulate microtubule polymerization and include paclitaxel . .
. docetaxel . . . the epothilones, discodermolide . . . and certain
steroids . . . ." In one embodiment, the magnetic anti-mitotic
compounds of this invention stimulate microtubule polymerization.
[0134] As is also disclosed in the Jordan et al. article, "The
classification of drugs as microtubule `stabilizers` or `destabilizers`
is overly simplistic . . . . The reason . . . is that drugs that
increase or decrease microtubule polymerization at high concentrations
powerfully suppress microtubule dynamics at 10-100 fold lower
concentrations and, therefore, kinetically stabilize the microtubules,
without changing the microtubule-polymer mass. In other words, the
effects of the drugs on dynamics are often more powerful than their
effects on polymer mass. It was previously thought that the effects of
the two classes of drugs on microtubule-polymer mass were the most
important actions responsible for their chemotherapeutic properties.
However, the drugs would have to be given and maintained at very high
dosage levels to act primarily and continuously on microtubule-polymer
mass. It now seems that the most important action of these drugs is the
suppression of spindle-microtubule dynamics, which results in the
slowing or blocking of mitosis at the metaphase-anaphase transition and
induction of apoptioic cell death." In one embodiment, the magnetic
properties of applicants' anti-mitotic compounds result in the slowing
or blocking of mitosis at the metaphase-anaphase transition.
[0135] As is also disclosed in the Jordan et al. article, "The
microtubule-targeted drugs affect microtubule dynamics in several
different ways. To suppress microtubule dynamics for a significant
time, the drugs must bind to and act directly on the microtubule. For
example, a drug that suppresses the shortening rate at microtubule ends
must bind directly to the microtubule, either at its end or along its
length . . . many drugs also act on soluble tubulin, and the relatively
ability of a given drug to bind to soluble tubulin or directly to the
microtubule, and the location of the specific binding site in tubulin
and the microtubule, greatly affect the response of the microtubule
system to the drug."
[0136] At page 258 of the Jordan et al. article, the mechanism
by which Vinca alkaloids kills cancer cells is discussed. It is stated
that: "Tubulin and microtubules are the main targets of the Vinca
alkaloids . . . , which depolymerize microtubles and destroy mitotic
spindles at high concentrations . . . , therefore leaving the dividing
cancer cells blocked in mitosis with condensed chromosomes. At low but
clinically relevant concentrations, vinblastine does not depolymerize
spindle microtubules, yet it powerfully blocks mitosis . . . and cells
die by apoposis. Studies form our laboratory . . . indicate that the
block is due to suppression of microtubule dynamics rather than
microtubule depolymerization . . . . Vinblastine binds to the
beta-submit of tublin dimmers at a distinct region called the
Vinca-binding domain. Various other novel chemotherapeutic drugs also
bind at this domain . . . . The binding of vinblastine to sulbue
tubulin is rapid ad reversible . . . . Importantly, binding of
vinblastine induces a conformational change in tubulin in connection
with tubulin self-association . . . . The ability of vinblastine to
increase the affinity of tubulin for itself probably has a key role in
the ability of the drug to stabilize microtubules kinetically."
[0137] The degree to which vinblastine binds to tubulin depends
upon whether the tubulin is "exposed" or "buried." As is also disclosed
in the Jordan et al. article, "Vinblastine also binds directly to
microtubules. In vitro, vinblastine binds to tubulin at the extreme
microtubule ends . . . with very high affinity, but it binds with
markedly reduced affinity to tubulin that is brued in the tubulin
lattice . . . . Remarkably, the binding of one or two molecules of
vinblastine per microtubule plus end is sufficient to reduce both
treadmilling and dynamic instability by about 50 percent without
causing appreciable microtubule depolymerization."
[0138] By comparison, the taxanes bind poorly to soluble
tubulin. As is also disclosed in the Jordan et al. article, "The
taxanes bind poorly to soluble tubulin itself, but instead bind
directly with high affinity to tubulin along the length of the
microtubule . . . . The biding site for paclitaxel is in the
beta-subunit, and its location, which is on the inside surface of the
microtubule, is known with precision . . . . Paclitaxel is thought to
gain access to its binding sites by diffusing through small openings in
the microtubules or fluctuations in the microtubule lattice. Binding of
paclitaxel to its site on the inside microtubule surface stabilizes the
microtubule and increases microtubule polymerization, presumably by
inducing a conformational change in the tubulin that, by an unknown
mechanism, increases its affinity for neighboring tubulin molecules."
In one preferred embodiment of this invention, a preferred magnetic
anti-mitotic compound of the invention binds well to soluble tubulin.
[0139] Even relatively small amounts of paclitaxel will
stabilize the microtubules. As is disclosed in the Jordan et al.
article, "There is one paclitaxel binding site on very molecule of
tublin in a microtubule and the ability of paclitaxel to increase
microtubule polymerization is associated with nearly 1:1 stoichiometric
bind of paclitaxel to tubulin in microtubules So if a typical
microtubule consists of approximately 10,000 tubulin molecules, then
the ability of paclitaxel to increase microtubule polymerization
requires the binding of about 5,000 paclitaxel molecules per
microtubule. However, in contrast with the large number of molecules
that are required to increase microtubule polymerization, we found that
binding of a very small number of molecules stabilizes the dynamics of
the microtubules without increasing microtubule polymerization."
Support for this statement in the article was a work by W. B. Derry et
al., "Substoichiometric binding of taxol suppresses microtubule
dynamics," Biochemistry, 34: 2203-2211, 1995.
[0140] As is also disclosed in the Jordan et al. article, " . .
. just one paclitaxel molecule bound per several hundred tubulin
molecules in a microtubule can reduce the rate of microtubule
shortening by about 50 percent. Suppression of microtubule dynamics by
paclitaxel leads to mitotic block in the absence of significant
microtubule bundling." Basis for this statement was an article by A. M.
Yvon et al., "Taxol suppresses dynamics of individual microtubules in
living human tumor cells," Mol. Biol. Cell, 10:947-949, 1999. This Yvon
et al. article was the "first demonstration that suppression of
microtubule dynamics in living cells by low concentrations of
paclitaxel correlates with mitotic block."
[0141] As is also disclosed in the Jordan et al. article, " . .
. the suppression of spindle-microtubule dynamics prevents the dividing
cancer cells from progressing from metaphase into anaphase and the
cells eventually die by apoptosis." As basis for this statement,
articles were cited by M. A. Jordan et al. ("Mitotic block induced in
HeLa cells by low concentrations of paclitaxel [Taxol] results in
abnormal mitotic exit and apoptotic cell death," Cancer Res., 56:
816-825, 1996), by Yvon et al. ("Taxol suppresses dynamics of
individual microtubules in living human tumor cells, Mol. Biol. Cell,
10: 947-949, 1999), and by J. Kelling et al. ("Suppression of
centromere dynamics by taxol in living osteosarcoma cells," Cancer
Res., 63: 2794-2801, 2003).
[0142] The Jordan et al. article also discusses the mechanism
by which colchicines exerts its anti-mitotic effects. At pages 260 et
seq., it discloses that: "The interaction of colchicines with tubulin
and microtubules presents yet another variation in the mechanisms by
which microtubule-active drugs inhibit microtubule function. As with
the Vinca alkaloids, colchicines depolymerizes microtubles at high
concentrations and stabilizes microtubule dynamics at low
concentrations. Colchicine inhibits microtubule polymerization
substoichiometrically (at concentrations well below the concentration
of tubulin that is free in solution . . . ." In support of this
statement, the Jordan et al. article cites an article by L. Wilson et
al. (in Microtubules [eds. J. S. Hymans et al.], 59-84 [Wiley-Liss, New
York, N.Y., 1994]).
[0143] As is also disclosed in the Jordan et al. article, " . .
. colchicine itself does not bind directly to microtubule ends.
Instead, it first binds to soluble tubulin, induces slow conformational
changes in the tubulin and ultimately forms a poorly reversible final
state tubulin-colchicine complex . . . which then copolymerizes into
the microtubule ends in small numbers along with large numbers of free
tubulin molecules."
[0144] The Jordan et al. article discloses that the
tubulin-colchicine complexes must bind more tightly to tublin that
tubulin itself does, stating that: "Tubulin colchicines complexes might
have a conformation that disrupts the microtubule lattice in a way that
slows, but does not prevent, new tubulin addition. Importantly, the
incorporated tubulin-colchicine complex must bind more tightly to its
tubulin neighbors than tubulin itself does, so that the normal rate of
tubulin dissociation is reduced."
[0145] As is also disclosed in the Jordan et al. article, "So,
despite the differences between the effects at high concentrations of
the Vinca/colchicines-like drugs and the taxane-like drugs, nearly all
of the microtubule-targeted antimitotic drugs stabilize microtubule
dynamics at their lowest effective concentrations. Stabilization of
microtubule dynamics correlates with blocking of the cell cycle at
mitosis and in sensitive tumour cells, ultimately resulting in cell
death by apoptosis. Therefore, the most potent mechanism of nearly all
of the microtubule-targeted drugs seems to be the stabilization of
dynamics of mitotic spindle microtubles."
[0146] In one preferred embodiment of this invention, the
antimitotic compounds of this invention inhibit the process of
angiogenesis (the formation of new blood vessels). In another
embodiment of this invention, the antimitotic compounds of this
invention shut down the existing vasculature of tumors.
[0147] Prior art compositions that have these antivascular
effects have been reported. Thus, as is disclosed at page 260 of the
2004 Jordan et al. article, "The tumour vasculature is a relatively
attractive new target for cancer therapy. The vasculature is easily
accessible to blood-borne therapeutic agents, and tumour cells
generally die rapidly unless they are supplied with oxygen and
nutrients through the blood. There are two types of approaches to
inhibiting vascular function. One . . . is the search for agents that
inhibit the process of angiogenesis--the formation new blood vessels.
However, more recently, the ability of several compounds, especially
microtubule-targeted agents, to rapidly shout down existing tumour
vasculature has been recognized . . . ." In support of this last
statement, the Jordan et al. article cited an article by G. M. Tozer et
al. on "The biology of the combretastatins as tumour vascular targeting
agents," Int. J. Exp. Pathol., 83: 21-38 (2002).
[0148] As is also disclosed in the 2004 Jordan et al. article,
"Since the late 1990s, the combestatins and
N-acetylcolchicinol-O-phosphate, compounds that resemble colchicines
and bind to the colchicines domain on tubulin, have undergone extensive
development as antivascular agents . . . . When vascular targeting
agents . . . are added to cultures of endothelial cells . . . , the
microtubules rapidly depolymerize, the cells become round within
minutes, undergo blebbing and detaching from the substrate, actin
stress fibres form (presumably as a result of signaling from the
depolymerizing microtubule cytoskeleton), and the cells die with no
evidence of apoptosis." As support for this latter statement, the 2004
Jordan et al. article cited a work by C. Kanthou et al., "The tumor
vascular targeting agent combretastatin A-4 phosphate induces
reorganization of the actin cytoskeleton and early membrane blebbing in
human endothelial cells," Blood, 99:2060-2069 (2002).
[0149] As is also disclosed in the 2004 Jordan et al. article,
"The process of vascular shutdown can be observed in rats through
windowed chambers that are implanted subcutaneously. This indicates
that a primary and marked effect of vascular-targeting agents is an
extremely rapid reduction of blood flow to the interior of solid
tumours, often within 5 minutes of administering the drug to the
animal. Within 1 hour, the red-cell velocity might drop to less than 5
percent of the starting value." As support for this statement, the 2004
Jordan et al. article cited a work by G. M. Tozer et al. on "Mechanisms
associated with tumor vascular shut-down induced by combretastatin A-4
phosphate: intravital microscopy and measurement of vascular
permeability," Cancer Res., 61: 6413-6422 (2001).
[0150] The anti-vascular agents cause small blood vessels to
disappear, blood flow to slow, red blood cells to aggregate in stacks
or "rouleaux," hemorrhaging from peripheral tumor vessels to occur,
vascular permeability to increase, and the death of interior tumor
cells by necrosis. See, e.g., an article by G. M. Tozer et al., "The
Biology of the combretastatins as tumor vascular targeting agents,"
Int. J. Exp. Pathol, 83: 21-38 (2002).
[0151] As is also disclosed in the 2004 Jordan et al. article,
" . . . the vascular-targeting agents that are now under development
seem to damage tumour vasculature without significantly harming normal
tissues . . . ." The Jordan et al. article, as support for this
statement, cites work by V. E. Prise et al., reported in "The vascular
response of tumor and normal tissues in the rat to the vascular
targeting agent combretastatin A4 phosphate, at clinically relevant
doses," Int. J. Oncol. 21: 717-726 (2002). In one embodiment, the
magnetic anti-mitotic compound of this invention damages tumors without
significantly harming normal tissues.
[0152] As is also disclosed in the 2004 Jordan et al. article,
"The source of this specificity is not known, but has been suggested to
be attributable to differences between the mature vasculature of normal
tissues and the immature or forming vasculature of tumors. There are
suggestions that endothelial cells of immature vasculature could have a
less well-developed actin cytoskeleton that might make the cells more
susceptible to collapse." The basis for this statement was an article
by P. D. Davis et al., "ZD6126: A novel vascular-targeting agent that
causes selective destruction of tumor vasculature," Cancer Res. 62:
7247-7253 (2003).
[0153] As is also disclosed in the 2004 Jordan et al. article,
" . . . more sluggish or more variable blood flow in tumour vasculature
might make the tumour vessels particularly susceptible to damaging
agents. Differences in rates of endothelial-cell proliferation, in
post-translational modifications of tubulin, and in interactions
between actin and microtubules might also contribute to the specificity
of vascular targeting agents."
[0154] At page 261 of the 2004 Jordan et al. article, tumor
sensitivity and resistance are discussed. It is disclosed that: "Among
the most important unsolved questions about the antitumour activities
of microtubule-targeted drugs concerns the basis of their tissue
specificities and the basis for the development of drug resistance to
these agents. For example, it is not known why paclitaxel is so
effective against ovarian, mammary and lung tumours, but essentially
ineffective against many other solid tumours, such as kidney or color
carcinomas and various sarcomas. Similarly, for the Vinca alkaloids, it
is unclear why they are frequently most effective against
haematological cancers, but often ineffective against many solid
tumors. There are clearly many determinants of sensitivity and
resistance to antimitotic drugs, both at the level of the cells
themselves and at the level of the pharmacological accessibility of the
drugs to the tumour cells." As authority for these statements, the 2004
Jordan et al. article cited work by C. Dumontet et al., "Mechanisms of
action of and resistance to antitubulin agents: microtubule dynamics,
drug transport, and cell death," J. Clin. Oncol., 17:1061-1070 (1999).
[0155] As is also disclosed in the 2004 Jordan et al. article,
"the "ultimate failure or inherent resistance to chemotherapy with
antimitotic drugs often results from overexpression of a class of
membrane transporter proteins known as ABC-transporters (ATP-dependent
drug efflux pumps or ATP-binding cassettes). These membrane pumps
produce decreased intracellular drug levels and lead to
cross-resistance (multidrug resistance) . . . to drugs of different
chemical structures, such as paclitaxel and Vinca alkaloids. The first
of many identified was P-glycoprotein, the product of the human MDRI
gene." As support for these statements, the 2004 Jordan et al. article
cited work by S. V. Ambudkar et al., "P-glycoprotein: from genomics to
mechanism," Oncogene, 22: 7468-7485 (2003).
[0156] In one preferred embodiment, the magnetic anti-mitotic
compound of this invention is not removed by these membrane pumps. It
should be noted that, as is reported by the 2004 Jordan et al. article,
"Considerable efforts are underway to understand these mechanisms of
resistance, to develop P-glycoprotein inhibitors and to develop
microtubule-targeted drugs that are not removed by these pumps. As
authority for these statements, the 2004 Jordan et al. article cited
works by S. V. Ambdukar et al. (see the citation in the preceding
paragraph), by A. R. Safa ("Identification and characterization of the
binding sites of P-glycoprotein for multidrug-resistance-related drugs
and modulators," Curr. Med. chem. Anti-Canc. Agents, 4: 1-17, 2004), by
H. Thomas et al. ("Overcoming multidrug resistance in cancer: an update
on the clinical strategy of inhibiting P-glycoprotein," Cancer Control,
10: 159-165, 2003), and by R. Geney et al. ("Overcoming multidrug
resistance in taxane chemotherapy," Clin. Chem. Lab. Med., 40: 918-925,
2002).
[0157] The 2004 Jordan et al. article discusses the role of
specific tubulin isotypes in multidrug resistance. At page 262 of the
article, it is stated that: "However, in addition, cells also have many
microtubule-related mechanisms that confer resistance or determine
intrinsic insensitivity to antimitotic drugs." As support for these
statements, the Jordan et al. article cites an article by G. A. Orr et
al. ("Mechanisms of taxol resistance related to microtubules,"
Oncogene, 22: 7280-7295, 2003) which is a comprehensive review of
microtubule-related mechanisms of paclitaxel resistance. The article
also cites works by M. Kavallaris et al. ("Multiple microtubule
alterations are associated with Vinca alkaloid resistance in human
leukemia cells," Cancer Res, 61: 5803-5809, 2001), by A. M. Minotti et
al. ("Resistance to antimitotic drugs in Chinese hamster overlay cells
correlated with changes in the level of polymerized tubulin," J. Biol.
Chem., 266: 3987-3994, 1991), by S. W. James et al. (A mutation in the
. . . tubulin gene of Chlamydomonas reinhardtii confers resistance to
anti-microtubule herbicides," J. Cell Sci. 106: 209-218, 1993), by W.
P. Lee et al. ("Purification and characterization of tublin form
parental and vincristine-resistant HOB1 lymphoma cells," Arch. Biochem.
Biophys. 319: 498-503, 1995), by S. Ohta et al. ("Characterization of a
taxol-resistant human small-cell lung cancer cell line," Jpn. J. Cancer
Res., 85: 290-297, 1994), and by N. M. Laing et al. ("Amplification of
the ATP-binding cassette 2 transporter gene if functionally linked with
enhanced efflux of estramustine in ovarian carcinoma cells," Cancer
Res., 58: 1332-1337, 1998.)
[0158] In one preferred embodiment of this invention, the
magnetic anti-mitotic compound of this invention binds to, and
inactivates, a tubulin isotype that causes, or tends to cause,
drug-resistance.
[0159] As is also disclosed in the 2004 Jordan et al. article,
"Microtubule polymer levels and dynamics are regulated by a host of
factors, including expression of regulatory proteins,
post-translational modifications of tubulin and expression of different
tubulin isotypes. The levels of each of these isotypes differ among
tissue and cell types, and there are numerous examples of changes in
their levels that correlate with development of resistance of
paclitaxel or Vinca alkaloids and other microtubule-targeted drugs." In
support of these statements, the Jordan et al. article cited works by
C. M. Galmarini et al. ("Drug resistance associated with loss of p53
involves extensive alterations in microtubule composition and
dynamics," Br. J. Cancer, 88:1793-1799, 2003), by C. A. Burkart et al.
("The role of beta-tubulin isotypes in resistance to antimitotic
drugs," Biochim. Biophys. Acta, 2: 01-09, 2001), by C. Dumontet et al.
("Resistance to microtubule-targeted cytotoxins in a K562 leukemia cell
variant is associated with altered tubulin expression," Elec. J.
Oncol., 2: 33-44, 1999), by P. Giannakakou et al. ("A common
pharmacophore for epothilone and taxanes: molecular basis for drug
resistance conferred by tubulin mutations in human cancer cells, Proc.
Natl. Acad. Sci USA, 97: 2904-2090, 2000), by A. Goncalves et al.
("Resistance to taxol in lung cancer cells associated with increased
microtubule dynamics," Proc. Natl. Acad. Sci USA, 98:11737-11741,
2001), by M. Haber et al. ("Altered expression of M32, the class II
beta-tubulin isotype, in a murine J774.2 cell line with a high level of
taxol resistance," J. Biol. Chem., 270: 31269-31275, 1995), by J. P.
Jaffrezou et al. ("Novel mechanism of resistance to paclitaxel in human
K562 leukemia cells by combined selection with PSC833," Oncology Res.,
7: 512-517, 1995), and by M. Kavallaris et al. ("Taxol-resistant
epithelial ovarian tumors are associated with altered expression of
specific beta-tubulin isotypes), J. Clin. Invest. 100: 1-12, 1997. In
one embodiment, the " . . . specific beta-tubulin isotypes" that are
preferentially expressed by malignant cells are preferentially bound to
(and inactivated) by the magnetic, anti-mitotic compound of this
invention, as is more fully discussed elsewhere in this specification.
[0160] As is also disclosed in the 2004 Jordan et al. article,
" . . . subtle suppression of microtubule dynamics by paclitaxel,
vinblastine or other antimitotic drugs, without any attendant change in
the microtubule-polymer mass, prevents progress through the cell cycle
from metaphase to anaphase in sensitive cells. Changes in microtubule
dynamics can lead to altered sensitivity to microtubule-targeted drugs.
In one well studied case of paclitaxel resistance, resistant and
paclitaxel-dependent A549 lung cancer cells had inherently faster
microtubule dynamics following withdrawal of paclitaxel than sensitive
cells . . . ." As support for this statement, the article cited work by
A. Goncalves et al., reported in "Resistance to taxol in lung cancer
cells associated with increased microtubule dynamics," Proc. Natl.
Acad. Sci. USA, 98: 11737-11747, 2001."
[0161] As is also disclosed in the 2004 Jordan et al. article,
"In the absence of paclitaxel, the paclitaxel-resistant/dependent cells
with the faster microtubule dynamics were unable to progress from
metaphase to anaphase and their spindles became disorganized. So, these
cells were resistant to paclitaxel and also dependent on paclitaxel to
slow their dynamics and allow them to go through mitosis successfully.
The inherent sensitivity of cells to subtle changes in microtubule
dynamics means that there are numerous ways for cells to become
resistant to microtubule-targeted drugs. In the case of the
paclitaxel-resistant A549 cells discussed above, the mechanisms of
increased dynamics seem to involve several changes. The resistant cells
overexpress one of the isotypes of tubulin, BIII-tubulin."
[0162] As support for this last statement, the 2004 Jordan et
al. article cited works by M. Kavallaris et al. ("Antisense
oligonucleotides to class III beta-tubulin sensitive drug-resistant
cells to taxol," Br. J. Cancer, 80: 1020-1025, 1991), by L. A. Martello
et al. ("Taxol and discodermolide represent a synergistic drug
combination in human carcinoma cell lines," Clin. Cancer Res., 6:
1978-1987, 2000), and another article by Martello et al. ("Elevated
levels of microtubule-destabilizing factors in a taxol-resistant A549
cell line with a alpha-tubulin mutation," Cancer Res., 63: 1207-1213,
2003. In one embodiment of this invention, the anti-mitotic compound of
this invention is used to bind with, and inactivate, the beta-tubulin
isotype(s) expressed by the drug-resistant cancer cells.
[0163] As is also disclosed in the 2004 Jordan et al. article.
"In addition, they have a heterozygous point mutation in alpha-tubulin
and they overexpress the active form of the microtubule-destabilizing
protein stahmin and the inactive form of the putative microtubule
stabilizing protein MAP 4."
[0164] As is also disclosed in the 2004 Jordan et al. article,
" . . . drug resistance might involve some of the other forms of
tubulin . . . that associate with the centrosomes in intraphase and
with the spindle poles in mitotic cells." In one embodiment of this
invention, the anti-mitotic compound of this invention binds to, and
inactivates, one or more of these other forms of tubulin.
[0165] As is also disclosed in the 2004 Jordan et al. article.
"The fact that antimitotic drugs bind to many diverse sites on tubulin
and microtubles mean that clinical combinations of two or more of these
drugs have the potential to improve efficiency and reduce the side
effects of therapy." In one embodiment of this invention, the actions
of two or more separate chemotherapeutic agents are combined into one
compound or composition. In another embodiment, the anti-mitotic
compound of this invention is administered with another
chemotherapeutic agent, prior to the administration of another
chemotherapeutic agent, or after the administration of another
chemotherapeutic agent. This embodiment is discussed elsewhere in this
specification.
[0166] As is also disclosed in the 2004 Jordan et al. article,
"The discovery of the synergistm of paclitaxel with discodermolide is
particularly interesting, as both drugs bind to the same or overlapping
sites on tubulin or microtubules." In one embodiment, the magnetic,
anti-mitotic compound of this invention binds to the same or
overlapping sites on tubulin or microtubules as does paclitaxel.
[0167] Many of the matters disclosed in the 2004 Jordan et al.
article regarding tubulin isotype are also disclosed in the patent
literature.
[0168] By way of illustration, U.S. Pat. No. 5,888,818, the
entire disclosure of which is hereby incorporated by reference into
this specification, claims "An isolated DNA encoding an alpha.- or
.gamma.-tubulin, which tubulin is resistant to an anti-tubulin agent
selected from the group consisting of dinitroanaline,
phosphorothioamidate and chlorthal dimethyl, the resistant tubulin
comprising a non-polar amino acid instead of a threonine residue at a
position corresponding to that depicted as position 239, 237, or 240 in
Table 2." At columns 1 et seq. of such patent, an excellent discussion
of microtubules and tubulin isotypes is presented.
[0169] Thus, as is disclosed in U.S. Pat. No. 5,888,818,
"Almost all eukaryotic cells contain microtubules which comprise a
major component of the network of proteinaceous filaments known as the
cytoskeleton. Microtubules thereby participate in the control of cell
shape and intracellular transport. They are also the principal
constituent of mitotic and meiotic spindles, cilia and flagella. In
plants, microtubules have additional specialized roles in cell division
and cell expansion during development."
[0170] As is also disclosed in U.S. Pat. No. 5,888,818, "In
terms of their composition, microtubules are proteinaceous hollow rods
with a diameter of approximately 24 nm and highly variable length. They
are assembled from heterodimer subunits of an .alpha.-tubulin and a
.beta.-tubulin polypeptide, each with a molecular weight of
approximately 50,000. Both polypeptides are highly flexible globular
proteins (approximately 445 amino acids), each with a predicted 25%
.alpha. helical and 40% .beta.-pleated sheet content. In addition to
the two major forms (.alpha.-and .beta.-tubulin), there is a rare
.gamma.-tubulin form which does not appear to participate directly in
the formation of microtubule structure, but rather it may function in
the initiation of microtubule structure."
[0171] As is also disclosed in U.S. Pat. No. 5,888,818, "In all
organisms, the multiple alpha.- and .beta.-tubulin polypeptides are
encoded by corresponding families of alpha.- and .beta.-tubulin genes,
which are located in the nuclear genome. Many such genes (or
corresponding cDNAs) have been isolated and sequenced. For example,
maize has approximately 6.alpha.-tubulin genes and approximately 8
.beta.-tubulin genes dispersed over the genome (Villemur et al, 1992,
34th Maize Genetics Symposium). Some of the .alpha.-tubulin genes from
maize have been cloned and sequenced (Montoliu et al, 1989, Plant Mol
Biol, 14, 1-15; Montoliu et al, 1990, Gene, 94, 201-207; Villemur et
al, 1992, J Mol Biol, 227:81-96), as have some of the .beta.-tubulin
genes (Hussey et al, 1990, Plant Mol Biol, 15, 957-972). Comparison of
amino acid sequences of the three documented maize .alpha.-tubulins
indicates they have 93% homology. Maize .beta.-tubulins exhibit 38%
identity with these alpha.-tubulins. In segments of divergence between
the alpha.- and .beta.-tubulin amino acid sequences, homology ranges
from 13% to 17%. Homology between the three .alpha.-tubulin amino acid
sequences within these same .alpha.-/.beta.-divergence regions ranges
from 77% to 96%."
[0172] As is also disclosed in U.S. Pat. No. 5,888,818,
"Sequence information on the various tubulin forms shows that
throughout evolution the protein domains involved in polymerization
have been highly conserved, and interspecies amino acid sequence
homology is generally high. For example, the four .beta.-tubulin
isotypes in human are identical with their counterparts in mouse. There
is 82-90% homology between mammalian neuronal or constitutively
expressed tubulins and algal, protozoan and slime mould tubulins.
Considering plant sequences in more detail, there are long stretches in
which the amino acid sequence of all the alpha.- and .beta.-tubulins
are identical (Silflow et al, 1987, Developmental Genetics, 8,
435-460). For example, the 35 amino acids in positions 401-435 are
identical in all plant alpha.-tubulins, as are the 41 amino acids in
the region between positions 240 and 281 in the plant .beta.-tubulins.
Conservation of amino acid residues is approximately 40% between the
alpha.- and .beta.-tubulin families, and 85-90% within each of the
alpha.- and .beta.-tubulin families. It should be noted that in
general, most .alpha.-tubulins are 1 to 5 residues larger that the
.beta.-tubulins."
[0173] U.S. Pat. No. 5,888,818 then goes on to discuss
anti-tubulin agents, stating that: "The economic interest of tubulins
lies in the effect of certain agents which interfere with tubulin
structure and/or function. Such agents (including non-chemical
stresses) are hereinafter referred to as `anti-tubulin agents` as they
share a similar type of mode of action. Extreme conditions are known to
destabilize the tubulins and/or microtubules. Such conditions include
cold, pressure and certain chemicals. For example, Correia (1991,
Pharmac Ther, 52:127-147) describes .alpha.- and .beta.-tubulin
interactions, microtubule assembly and drugs affecting their stability.
Some anti-tubulin agents are often called `spindle poisons` or
`antimitotic agents` because they cause disassembly of microtubules
which constitute the mitotic spindle. For at least one hundred years,
it has been known that certain chemical agents arrest mammalian cells
in mitosis, and of these agents the best known is colchicine which was
shown in the mid-1960s to inhibit mitosis by binding to tubulin. Many
of these anti-tubulin agents have since found widespread use as cancer
therapeutic agents (eg vincristine, vinblastine, podophyllotoxin),
estrogenic drugs, anti-fungal agents (eg griseofulvin), antihelminthics
(eg the benzimidazoles) and herbicides (eg the dinitroanilines). Indeed
some of the specific agents have uses against more than one class of
organism. For example, the dinitroaniline herbicide trifluralin has
recently been shown to inhibit the proliferation and differentiation of
the parasitic protozoan Leishmania (Chan and Fong, 1990, Science,
249:924-926)." Thus, as is apparent from this teaching, the magnetic,
anti-mitotic drugs disclosed in this specification may be used not only
to treat cancer but also as " . . . estrogenic drugs, anti-fungal
agents . . . , antihelminthics . . . and herbicides . . . ."
[0174] As is also disclosed in U.S. Pat. No. 5,888,818, "The
dinitroaniline herbicides may be considered as an example of one group
of anti-tubulin agents. Dinitroaniline herbicides are widely used to
control weeds in arable crops, primarily for grass control in
dicotyledonous crops such as cotton and soya. Such herbicides include
trifluralin, oryzalin, pendimethalin, ethalfluralin and others. The
herbicidally active members of the dinitroaniline family exhibit a
common mode of action on susceptible plants. For example,
dinitroaniline herbicides disrupt the mitotic spindle in the meristems
of susceptible plants, and thereby prevent shoot and root elongation
(Vaughn K C and Lehnen L P, 1991, Weed Sci, 39:450-457). The molecular
target for dinitroaniline herbicides is believed to be tubulin proteins
which are the principle constituents of microtubules (Strachan and
Hess, 1983, Pestic Biochem Physiology, 20, 141-150; Morejohn et al,
1987, Planta, 172, 252-264)."
[0175] As is also disclosed in U.S. Pat. No. 5,888,818, "The
extensive interest in anti-tubulin agents in many branches of science
has been accompanied by the identification of several mutants shown to
resist the action of such agents (Oakley B R, 1985, Can J Biochem Cell
Biol, 63:479-488). Several of these mutants have been shown to contain
modified alpha.- or .beta.-tubulin genes, but to date the only
resistant mutants to be fully characterised and sequenced are those in
.beta.-tubulin. For example, colchicine resistance in mammalian cell
lines is closely associated with modified .beta.-tubulin polypeptides
(Cabral et al, 1980, Cell, 20, 29-36); resistance to benzimidazole
fungicides has been attributed to a modified .beta.-tubulin gene, for
example in yeast (Thomas et al, 1985, Genetics, 112, 715-734) and
Aspergillus (Jung et al, 1992, Cell Motility and the Cytoskeleton,
22:170-174); some benzimidazole resistant forms of nematode are known;
and dinitroaniline-resistant Chlamydomonas mutants possess a modified
.beta.-tubulin gene (Lee and Huang, 1990, Plant Cell, 2, 1051-1057).
Some of these mutants, although resistant to one anti-tubulin agent,
also show increased susceptibility to other anti-tubulin agents (such
as cold stress)." As is also discussed elsewhere in this, and in one
preferred embodiment, the anti-mitotic compounds and/or compositions of
this invention are adapted to bind one or more of the tubulin isotypes
expressed by such mutants.
[0176] As is also disclosed in U.S. Pat. No. 5,888,818, "Among
certain weed species, some biotypes have evolved resistance to
dinitroaniline herbicides. Three examples of species in which
dinitroaniline resistant (R) biotypes have emerged are goosegrass,
Eleusine indica (Mudge et al, 1984, Weed Sci, 32, 591-594); green
foxtail, Setaria viridis (Morrison et al, 1989, Weed Technol, 3,
554-551); and Amaranthus palmeri (Gossett et al, 1992, Weed Technology,
6:587-591). These resistant (R) biotypes emerged following selective
pressure exerted by repeated application of trifluralin. A range of
resistant biotypes of each species exists but the nature and source of
the resistance trait is unclear and the biotypes are genetically
undefined. The R biotypes of these species exhibit cross-resistance to
a wide range of dinitroaniline herbicides, including oryzalin,
pendimethalin and ethalfluralin. All dinitroaniline herbicides have a
similar mode of action and are therefore believed to share a common
target site. Many of the R biotypes are also cross-resistant to other
herbicide groups such as the phosphorothioamidates, which include
amiprophos-methyl and butamifos, or chlorthal-dimethyl. The phenomenon
of cross-resistance exhibited by resistant biotypes strongly indicates
that the herbicide resistance trait is a consequence of a modified
target site. In addition, the resistant biotypes appear to have no
competitive disadvantage as they grow vigorously and can withstand
various stresses (such as cold)." To the extent that the drug resistant
trait is " . . . a consequence of a modified target site . . . ," and
in one preferred embodiment, the magnetic anti-mitotic compounds of
this invention are adapted to preferentially bind to such modified
target site.
[0177] As is also disclosed in U.S. Pat. No. 5,888,818, "It has
not been previously shown which specific gene is modified in Eleusine
indica or Setaria viridis to confer the dinitroaniline resistance
trait. Research by K. C. Vaughn and M. A. Vaughn (American Chemical
Society Symposium Series, 1989, 364-375) showed an apparent alteration
in the electrophoretic properties of .beta.-tubulin present in an R
biotype of Eleusine indica, and suggested dinitroaniline resistance
results from the presence of a modified .beta.-tubulin polypeptide. The
results of recent work by Waldin, Ellis and Hussey (1992, Planta,
188:258-264) provide no evidence that dinitroaniline herbicide
resistance is associated with an electrophoretically modified
.beta.-tubulin polypeptide in the resistant biotypes of Eleusine
indicator Setaria viridis which were studied." In one preferred
embodiment of this invention, the magnetic anti-mitotic agent of this
invention is adapted to bind to a target site on a beta-tubulin
polypeptide.
[0178] U.S. Pat. No. 6,306,615, the entire disclosure of which
is hereby incorporated by reference into this specification, claims a
detection method for identifying modified beta-tubulin isotypes. Thus,
e.g., claim 17 of this patent discloses: "17. A method of monitoring
the amount of a tubulin modified at a cysteine residue at amino acid
position 239 in a patient treated with a sulfhydryl or a disulfide
tubulin modifying agent, the method comprising the steps of: (a)
providing a sample from the patient treated with the tubulin modifying
agent; (b) contacting the sample with an antibody that specifically
binds to the tubulin modified at a cysteine residue at amino acid
position 239; and (c) determining the amount of the tubulin modified at
a cysteine residue at amino acid position 239 in the patient sample by
detecting the antibody and comparing the amount of antibody detected in
the patient sample to a standard curve, thereby monitoring the amount
of the tubulin modified at a cysteine residue at amino acid position
239 in the patient."
[0179] As is also disclosed in U.S. Pat. No. 6,306,615,
"Microtubules are composed of .alpha./.beta.-tubulin heterodimers and
constitute a crucial component of the cell cytoskeleton. Furthermore,
microtubules play a pivotal role during cell division, in particular
when the replicated chromosomes are separated during mitosis.
Interference with the ability to form microtubules from
.alpha./.beta.-tubulin heterodimeric subunits generally leads to cell
cycle arrest. This event can, in certain cases, induce programmed cell
death. Thus, natural products and organic compounds that interfere with
microtubule formation have been used successfully as chemotherapeutic
agents in the treatment of various human cancers."
[0180] As is also disclosed in U.S. Pat. No. 6,306,615,
"Pentafluorophenylsulfonamidobenzenes and related sulfhydryl and
disulfide modifying agents (see, e.g., compound 1;
2-fluoro-1-methoxy-4-pentafluorophenylsulfonamidobenzene; . . . prevent
microtubule formation by selectively covalently modifying
.beta.-tubulin. For example, compound 1 does not covalently modify all
of the five known .beta.-tubulin isotypes. Instead, binding is
restricted to those .beta.-tubulin isotypes that have a cysteine
residue at amino acid position 239 in .beta.-tubulin. Such isotypes
include beta-1, beta-2, and beta-4. The other two isotypes (beta-3 and
beta-5) have a serine residue at this particular position (Shan et al.,
Proc. Nat'l Acad. Sci USA 96:5686-5691 (1999)). It is notable that no
other cellular proteins are modified by compound 1." In one embodiment
of this invention, the anti-mitotic compound of this invention
selectively covalently modifies certain beta-tubulin isotypes but does
not covalently modify other proteins.
[0181] U.S. Pat. No. 6,362,321, the entire disclosure of which
is hereby incorporated by reference into this specification, discusses
taxol-resistant cancer cell lines. At column 1 of this patent, it is
disclosed that: "Many of the most common carcinomas, including breast
and ovarian cancer, are initially relatively sensitive to a wide
variety chemotherapy agents. However, acquired drug resistance
phenotype typically occurs after months or years of exposure to
chemotherapy. Determining the molecular basis of drug resistance may
offer opportunities for improved diagnostic and therapeutic
strategies."
[0182] As is also disclosed in U.S. Pat. No. 6,362,32, "Taxol
is a natural product derived from the bark of Taxus brevafolio (Pacific
yew). Taxol inhibits microtubule depolymerization during mitosis and
results in subsequent cell death. Taxol displays a broad spectrum of
tumorcidal activity including against breast, ovary and lung cancer
(McGuire et al., 1996, N. Engld. J. Med. 334:1-6; and Johnson et al.,
1996, J. Clin. Ocol. 14:2054-2060). While taxol is often effective in
treatment of these malignancies, it is usually not curative because of
eventual development of taxol resistance. Cellular resistance to taxol
may include mechanisms such as enhanced expression of P-glycoprotein
and alterations in tubulin structure through gene mutations in the B
chain or changes in the ratio of tubulin isomers within the polymerized
microtubule (Wahl et al., 1996, Nature Medicine 2:72-79; Horwitz et
al., 1993, Natl. Cancer Inst. 15:55-61; Haber et al., 1995, J. Biol.
Chem. 270:31269-31275; and Giannakakou et al., 1997, J. Biol. Chem.
272:17118-17125). Some tumors acquires taxol resistance through unknown
mechanisms."
[0183] International publication WO02/36603A2, the entire
disclosure of which is hereby incorporated by reference into this
specification, discloses nucleic acid molecules comprising a nucleotide
sequence encoding a tubulin molecule. At pages 1 et seq. of this patent
document, it is disclosed that: "Microtubules are essential to the
eucaryotic cell due as they are involved in many processes and
functions such as, e.g., being components of the cytoskeleton, of the
centrioles and ciliums and in the formation of spindle fibres during
mitosis. The constituents of microtubules are heterodimers consisting
of one alpha-tubulin molecule and one beta-tubulin molecule. These two
related self-associating 50 kDa proteins are encoded by a multigen
family. The various members of this multigen family are dispersed all
over the human genome. Both alpha-tubulin and beta-tubulin are most
likely to originate from a common ancestor as their amino acid sequence
shows a homology of up to 50%. In man there are at least 15 genes or
pseudogenes for tubulin.
[0184] As is also disclosed in International Publication
WO0236603, "The conservation of structure and regulatory functions
among the beta-tubulin genes in three vertebrate species (chicken,
mouse and human) allowed the identification of and categorization into
six major classes of beta-tubulin polypeptide isotypes on the basis of
their variable carboxyterminal ends. The specific, highly variable 15
carboxyterminal amino acids are very conserved among the various
species. Beta-tubulins of categories I, 11, and IV are closely related
differing only 2-4% in contrast to categories III, V and VI which
differ in 8-16% of amino acid positions [Sullivan K. F., 1988, Ann.
Rev. Cell Biol. 4: 687-716].
[0185] As is also disclosed in International Publication
WO0236603, "Also the expression pattern is very similar between the
various species as can be taken from the following table [Sullivan K.
F., 1988, Arm. Rev. Cell Biol. 4: 687-716] which comprises the
respective human members of each class . . . . The C terminal end of
the beta-tubulins starting from amino acid 430 is regarded as highly
variable between the various classes. Additionally, the members of the
same class seem to be very conserved between the various species."
[0186] As is also disclosed in International Publication
WO0236603, "As tubulin molecules are involved in many processes and
form part of many structures in the eucaryotic cell, they are possible
targets for pharmaceutically active compounds. As tubulin is more
particularly the main structural component of the microtubules it may
act as point of attack for anticancer drugs such as vinblastin,
colchicin, estramustin and taxol which interfere with microtubule
function. The mode of action is such that cytostatic agents such as the
ones mentioned above, bind to the carboxyterminal end the beta-tubulin
which upon such binding undergoes a conformational change. For example,
Kavallaris et al. [Kavallaris et al. 1997, J. Clin. Invest. 100:
1282-1293] reported a change in the expression of specific beta-tubulin
isotypes (class I, II, III, and IVa) in taxol resistant epithelial
ovarian tumor. It was concluded that these tubulins are involved in the
formation of the taxol resistence. Also a high expression of class III
beta-tubulins was found in some forms of lung cancer suggesting that
this isotype may be used as a diagnostic marker."
[0187] As is also disclosed in International Publication
WO0236603, "The problem underlying the present invention was to provide
the means to further characterize the various tubulins present in
eucaryotic cells. A further problem underlying the present invention
was to provide the means to extend possible screening programs for
cytostatic agents to other isotypes of human beta-tubulins. This
problem is solved in a first aspect by a nucleic acid molecule
comprising a nucleotide sequence encoding a tubulin molecule, wherein
said nucleic acid molecule comprises the sequence according to SEQ. ID.
No. 1 This problem is solved in a second aspect by a nucleic acid
molecule comprising a nucleotide sequence encoding a tubulin molecule,
wherein said nucleic acid molecule comprises the sequence according to
SEQ. ID. No. 2." The aforementioned SEQ. ID. No. 1 and SEQ. ID. No. 2
are referred to herein as SEQ. ID No. 291 and 292 respectively.
[0188] Published United States patent application 2002/0106705,
the entire disclosure of which is hereby incorporated by reference into
this specification, describes a method for detecting a modified
beta-tubulin isotype. Claim 1 of this patent, which is typical,
describes: "A method of detecting in a sample a .beta.-tubulin isotype
modified at cysteine residue 239, the method comprising the steps of:
(a) providing a sample treated with a .beta.-tubulin modifying agent;
(b) contacting the sample with an antibody that specifically binds to a
.beta.-tubulin isotype modified at cysteine residue 239; and (c)
determining whether the sample contains a modified .beta.-tubulin
isotype by detecting the antibody." This patent discloses that:
"Microtubules are composed of .alpha./.beta.-tubulin heterodimers and
constitute a crucial component of the cell cytoskeleton. Furthermore,
microtubules play a pivotal role during cell division, in particular
when the replicated chromosomes are separated during mitosis.
Interference with the ability to form microtubules from
.alpha./.beta.-tubulin heterodimeric subunits generally leads to cell
cycle arrest. This event can, in certain cases, induce programmed cell
death. Thus, natural products and organic compounds that interfere with
microtubule formation have been used successfully as chemotherapeutic
agents in the treatment of various human cancers."
[0189] Published United States patent application 2002/0106705
also discloses that: "Pentafluorophenylsulfonamidobenzenes and related
sulfhydryl and disulfide modifying agents (see, e.g., compound 1;
2-fluoro-1-methoxy-4-pentafluorophenylsulfonamidobenzene . . . prevent
microtubule formation by selectively covalently modifying
.beta.-tubulin. For example, compound 1 does not covalently modify all
of the five known .beta.-tubulin isotypes. Instead, binding is
restricted to those .beta.-tubulin isotypes that have a cysteine
residue at amino acid position 239 in .beta.-tubulin. Such isotypes
include .beta.1, .beta.2 and .beta.4-tubulin. The other two isotypes
(.beta.3 and .beta.5) have a serine residue at this particular position
(Shan et al., Proc. Nat'l Acad. Sci USA 96:5686-5691 (1999)). It is
notable that no other cellular proteins are modified by compound 1."
[0190] Published United States patent application 2002/0106705
relates primarily to a " . . . a .beta.-tubulin isotype modified at
cysteine residue 239 . . . ." Thus, at page 3 of this published patent
application, in defining a "beta-tubulin modifying agent," it describes
such agent as follows: "A ".beta.-tubulin modifying agent" refers to an
agent that has the ability to specifically react with an amino acid
residue of .beta.-tubulin, preferably a cysteine, more preferably the
cysteine residue at position 239 of a .beta.-tubulin isotype such as
.beta.1- .beta.2- or .beta.4-tubulin and antigenic fragments thereof
comprising the residue, preferably cysteine 239. The .beta.-tubulin
modifying agent of the invention can be, e.g., any sulfhydryl or
disulfide modifying agent known to those of skill in the art that has
the ability to react with the sulfur group on a cysteine residue,
preferably cysteine residue 239 of a .beta.-tubulin isotype.
Preferably, the .beta.-tubulin modifying agents are substituted benzene
compounds, pentafluorobenzenesulfonamides, arylsulfonanilide
phosphates, and derivatives, analogs, and substituted compounds thereof
(see, e.g., U.S. Pat. No. 5,880,151; PCT 97/02926; PCT 97/12720; PCT
98/16781; PCT 99/13759; and PCT 99/16032, herein incorporated by
reference; see also Pierce Catalogue, 1999/2000, and Means, Chemical
Modification of Proteins). In one embodiment, the agent is
2-fluoro-1-methoxy-4-pentafluorophenylsulfonamidobenzene (compound 1;
FIG. 1C). Modification of a .beta.-tubulin isotype at an amino acid
residue, e.g., cysteine 239, by an agent can be tested by treating a
.beta.-tubulin peptide, described herein, with the putative agent,
followed by, e.g., elemental analysis for a halogen, e.g., fluorine,
reverse phase HPLC, NMR, or sequencing and HPLC mass spectrometry.
Optionally compound 1 described herein can be used as a positive
control. Similarly, an .alpha.-tubulin modifying agent refers to an
agent having the ability to specifically modify an amino acid residue
of an .alpha.-tubulin."
[0191] U.S. Pat. No. 6,541,509, the entire disclosure of which
is hereby incorporated by reference into this specification, discloses
a "method for treating neoplasis using combination chemotherapy." Claim
1 of this patent describes: "A method of treating neoplasia in a
subject in need of treatment, comprising administering to the subject
an amount of paclitaxel effective to treat the neoplasia, in
combination with an amount of discodermolide effective to treat the
neoplasia, wherein a synergistic antineoplastic effect results." At
column 6 of this patent, the patentees discuss how to determine synergy
between two drugs. They state that: One measure of synergy between two
drugs is the combination index (CI) method of Chou and Talalay [37],
which is based on the median-effect principle. This method calculates
the degree of synergy, additivity, or antagonism between two drugs at
various levels of cytotoxicity. Where the CI value is less than 1,
there is synergy between the two drugs. Where the CI value is 1, there
is an additive effect, but no synergistic effect. CI values greater
than 1 indicate antagonism. The smaller the CI value, the greater the
synergistic effect. Another measurement of synergy is the fractional
inhibitory concentration (FIC) [48]. This fractional value is
determined by expressing the IC50 of a drug acting in combination, as a
function of the IC50 of the drug acting alone. For two interacting
drugs, the sum of the FIC value for each drug represents the measure of
synergistic interaction. Where the FIC is less than 1, there is synergy
between the two drugs. An FIC value of 1 indicates an additive effect.
The smaller the FIC value, the greater the synergistic interaction. In
the method of the present invention, combination therapy using
paclitaxel and discodermolide preferably results in an antineoplastic
effect that is greater than additive, as determined by any of the
measures of synergy known in the art." The cited Chou et al. reference
is an entitled "Quantitative analysis of dose effect relationships: the
combined effect of multiple drugs or enzyme inhibitors," Adv. Enzyme
Regul., 11:27-56 (1984). The cited "reference 48 is an article by Hall
et al., "The fractional inhibitory concentration (FIC) as a measure of
synergy," J. Antimicrob. Chemother., 11(5):427-433 (1983).
[0192] Claim 8 of U.S. Pat. No. 6,541,509 describes "A
synergistic combination of antineoplastic agents, comprising an
effective antimenoplastic amount of paclitaxel and an effective
antineoplastic amount of discodermolide." As one embodiment of the
instant invention, applicants claims: A synergistic combination of
antineoplastic agents, comprising an effective antimenoplastic amount
of paclitaxel and an effective antineoplastic amount of the preferred,
magnetic anti-mitotic compound of this invention. Thus, the process of
such U.S. Pat. No. 6,541,509 may be adapted to use the magnetic
compound of this invention instead of discodermolide.
[0193] As is disclosed in U.S. Pat. No. 6,541,509, "The present
invention provides a method of treating neoplasia in a subject in need
of treatment. As used herein, `neoplasia` refers to the uncontrolled
and progressive multiplication of cells under conditions that would not
elicit, or would cause cessation of, multiplication of normal cells.
Neoplasia results in the formation of a `neoplasm`, which is defined
herein to mean any new and abnormal growth, particularly a new growth
of tissue, in which the growth is uncontrolled and progressive.
Malignant neoplasms are distinguished from benign in that the former
show a greater degree of anaplasia, or loss of differentiation and
orientation of cells, and have the properties of invasion and
metastasis. Thus, neoplasia includes `cancer`, which herein refers to a
proliferation of cells having the unique trait of loss of normal
controls, resulting in unregulated growth, lack of differentiation,
local tissue invasion, and metastasis." As support for this statement,
the patent cited a work by Beers and Berkow (eds.), The Merck Manual of
Diagnosis and Therapy, 17.sup.th edition (Whitehouse Station, N.J.;
Merck Research Laboratories, 1999, 973-974, 976, 986, and 991).
[0194] As is also disclosed in U.S. Pat. No. 6,541,509, " . . .
neoplasia is treated in a subject in need of treatment by administering
to the subject an amount of paclitaxel effective to treat the
neoplasia, in combination with an amount of discodermolide effective to
treat the neoplasia, wherein a synergistic antineoplastic effect
results. The subject is preferably a mammal (e.g., humans, domestic
animals, and commercial animals, including cows, dogs, monkeys, mice,
pigs, and rats), and is most preferably a human." In the embodiment
described in this specification, the magnetic compound of this
invention replaces discomdermolide.
[0195] As is also disclosed in U.S. Pat. No. 6,541,509, " . . .
`paclitaxel` refers to paclitaxel and analogues and derivatives
thereof, including, for example, a natural or synthetic functional
variant of paclitaxel which has paclitaxel biological activity, as well
as a fragment of paclitaxel having paclitaxel biological activity. As
further used herein, the term "paclitaxel biological activity" refers
to paclitaxel activity which interferes with cellular mitosis by
affecting microtubule formation and/or action, thereby producing
antimitotic and antineoplastic effects. Furthermore, as used herein,
`antineoplastic` refers to the ability to inhibit or prevent the
development or spread of a neoplasm, and to limit, suspend, terminate,
or otherwise control the maturation and proliferation of cells in a
neoplasm."
[0196] As is also disclosed in U.S. Pat. No. 6,541,509,
"Methods of preparing paclitaxel and its analogues and derivatives are
well-known in the art, and are described, for example, in U.S. Pat.
Nos. 5,569,729; 5,565,478; 5,530,020; 5,527,924; 5,484,809; 5,475,120;
5,440,057; and 5,296,506. Paclitaxel and its analogues and derivatives
are also available commercially. Synthetic paclitaxel, for example, can
be obtained from Bristol-Myers Squibb Company, Oncology Division
(Princeton, N.J.), under the registered trademark Taxol. Taxol for
injection may be obtained in a single-dose vial, having a concentration
of 30 mg/5 mL (6 mg/mL per 5 mL) [47]. Taxol and its analogues and
derivatives have been used successfully to treat leukemias and tumors.
In particular, Taxol is useful in the treatment of breast, lung, and
ovarian cancers. Discodermolide and its analogues and derivatives can
be isolated from extracts of the marine sponge, Discodermia dissoluta,
as described, for example, in U.S. Pat. Nos. 5,010,099 and 4,939,168.
Discodermolide and its analogues and derivatives also may be
synthesized, as described, for example, in U.S. Pat. No. 6,096,904.
Moreover, both paclitaxel and discodermolide may be synthesized in
accordance with known organic chemistry procedures [46] that are
readily understood by one skilled in the art."
[0197] As is also disclosed in U.S. Pat. No. 6,541,509, "In the
method of the present invention, an amount of paclitaxel or
discodermolide that is `effective to treat the neoplasia` is an amount
that is effective to ameliorate or minimize the clinical impairment or
symptoms of the neoplasia, in either a single or multiple dose. For
example, the clinical impairment or symptoms of the neoplasia may be
ameliorated or minimized by diminishing any pain or discomfort suffered
by the subject; by extending the survival of the subject beyond that
which would otherwise be expected in the absence of such treatment; by
inhibiting or preventing the development or spread of the neoplasm; or
by limiting, suspending, terminating, or otherwise controlling the
maturation and proliferation of cells in the neoplasm. For example,
doses of paclitaxel (Taxol) administered intraperitoneally may be
between 1 and 10 mg/kg, and doses administered intravenously may be
between 1 and 3 mg/kg, or between 135 mg/m2 and 200 mg/m2. However, the
amounts of paclitaxel and discodermolide effective to treat neoplasia
in a subject in need of treatment will vary depending on the particular
factors of each case, including the type of neoplasm, the stage of
neoplasia, the subject's weight, the severity of the subject's
condition, and the method of administration. These amounts can be
readily determined by the skilled artisan."
[0198] As is also disclosed in U.S. Pat. No. 6,541,509, "The
method of the present invention may be used to treat neoplasia in a
subject in need of treatment. Neoplasias for which the present
invention will be particularly useful include, without limitation,
carcinomas, particularly those of the bladder, breast, cervix, colon,
head, kidney, lung, neck, ovary, prostate, and stomach; lymphocytic
leukemias, particularly acute lymphoblastic leukemia and chronic
lymphocytic leukemia; myeloid leukemias, particularly acute monocytic
leukemia, acute promyelocytic leukemia, and chronic myelocytic
leukemia; malignant lymphomas, particularly Burkitt's lymphoma and
Non-Hodgkin's lymphoma; malignant melanomas; myeloproliferative
diseases; sarcomas, particularly Ewing's sarcoma, hemangiosarcoma,
Kaposi's sarcoma, liposarcoma, peripheral neuroepithelioma, and
synovial sarcoma; and mixed types of neoplasias, particularly
carcinosarcoma and Hodgkin's disease [45]. Preferably, the method of
the present invention is used to treat breast cancer, colon cancer,
leukemia, lung cancer, malignant melanoma, ovarian cancer, or prostate
cancer." The aforementioned neoplasias may also be treated by the
process of the instant invention.
[0199] As is also disclosed in U.S. Pat. No. 6,541,509, "In the
method of the present invention, paclitaxel is administered to a
subject in combination with discodermolide, such that a synergistic
antineoplastic effect is produced. A `synergistic antineoplastic
effect` refers to a greater-than-additive antineoplastic effect which
is produced by a combination of two drugs, and which exceeds that which
would otherwise result from individual administration of either drug
alone. Administration of paclitaxel in combination with discodermolide
unexpectedly results in a synergistic antineoplastic effect by
providing greater efficacy than would result from use of either of the
antineoplastic agents alone. Discodermolide enhances paclitaxel's
effects. Therefore, lower doses of one or both of the antineoplastic
agents may be used in treating neoplasias, resulting in increased
therapeutic efficacy and decreased side-effects." As will be apparent,
in applicants' invention the discodermolide is replaced by the magnetic
anti-mitotic compound described in this specification.
[0200] As is also disclosed in U.S. Pat. No. 6,541,509,
"Discodermolide also may provide a means to circumvent clinical
resistance due to overproduction of P-glycoprotein. Accordingly, the
combination of paclitaxel and discodermolide may be advantageous for
use in subjects who exhibit resistance to paclitaxel (Taxol). Since
Taxol is frequently utilized in the treatment of human cancers, a
strategy to enhance its utility in the clinical setting, by combining
its administration with that of discodermolide, may be of great benefit
to many subjects suffering from malignant neoplasias, particularly
advanced cancers." The comments made regarding discodermolide are
equally applicable to applicants' magnetic anti-mitotic agent.
[0201] As is also disclosed in U.S. Pat. No. 6,541,509, "In the
method of the present invention, administration of paclitaxel `in
combination with` discodermolide refers to co-administration of the two
antineoplastic agents. Co-administration may occur concurrently,
sequentially, or alternately. Concurrent co-administration refers to
administration of both paclitaxel and discodermolide at essentially the
same time. For concurrent co-administration, the courses of treatment
with paclitaxel and with discodermolide may be run simultaneously. For
example, a single, combined formulation, containing both an amount of
paclitaxel and an amount of discodermolide in physical association with
one another, may be administered to the subject. The single, combined
formulation may consist of an oral formulation, containing amounts of
both paclitaxel and discodermolide, which may be orally administered to
the subject, or a liquid mixture, containing amounts of both paclitaxel
and discodermolide, which may be injected into the subject." The same
means of administration may be used in the process of the instant
invention.
[0202] As is also disclosed in U.S. Pat. No. 6,541,509, "It is
also within the confines of the present invention that an amount of
paclitaxel and an amount of discodermolide may be administered
concurrently to a subject, in separate, individual formulations.
Accordingly, the method of the present invention is not limited to
concurrent co-administration of paclitaxel and discodermolide in
physical association with one another." The same means of
administration may be used in the process of the instant invention.
[0203] As is also disclosed in U.S. Pat. No. 6,541,509, "In the
method of the present invention, paclitaxel and discodermolide also may
be co-administered to a subject in separate, individual formulations
that are spaced out over a period of time, so as to obtain the maximum
efficacy of the combination. Administration of each drug may range in
duration from a brief, rapid administration to a continuous perfusion.
When spaced out over a period of time, co-administration of paclitaxel
and discodermolide may be sequential or alternate. For sequential
co-administration, one of the antineoplastic agents is separately
administered, followed by the other. For example, a full course of
treatment with paclitaxel may be completed, and then may be followed by
a full course of treatment with discodermolide. Alternatively, for
sequential co-administration, a full course of treatment with
discodermolide may be completed, then followed by a full course of
treatment with paclitaxel. For alternate co-administration, partial
courses of treatment with paclitaxel may be alternated with partial
courses of treatment with discodermolide, until a full treatment of
each drug has been administered." The same means of administration may
be used in the process of the instant invention.
[0204] As is also disclosed in U.S. Pat. No. 6,541,509, "The
antineoplastic agents of the present invention (i.e., paclitaxel and
discodermolide, either in separate, individual formulations, or in a
single, combined formulation) may be administered to a human or animal
subject by known procedures, including, but not limited to, oral
administration, parenteral administration (e.g., intramuscular,
intraperitoneal, intravascular, intravenous, or subcutaneous
administration), and transdermal administration. Preferably, the
antineoplastic agents of the present invention are administered orally
or intravenously." The same means of administration may be used in the
process of the instant invention.
[0205] As is also disclosed in U.S. Pat. No. 6,541,509, "For
oral administration, the formulations of paclitaxel and discodermolide
(whether individual or combined) may be presented as capsules, tablets,
powders, granules, or as a suspension. The formulations may have
conventional additives, such as lactose, mannitol, corn starch, or
potato starch. The formulations also may be presented with binders,
such as crystalline cellulose, cellulose derivatives, acacia, corn
starch, or gelatins. Additionally, the formulations may be presented
with disintegrators, such as corn starch, potato starch, or sodium
carboxymethyl-cellulose. The formulations also may be presented with
dibasic calcium phosphate anhydrous or sodium starch glycolate.
Finally, the formulations may be presented with lubricants, such as
talc or magnesium stearate." The same means of administration may be
used in the process of the instant invention.
[0206] As is also disclosed in U.S. Pat. No. 6,541,509, "For
parenteral administration, the formulations of paclitaxel and
discodermolide (whether individual or combined) may be combined with a
sterile aqueous solution which is preferably isotonic with the blood of
the subject. Such formulations may be prepared by dissolving a solid
active ingredient in water containing physiologically-compatible
substances, such as sodium chloride, glycine, and the like, and having
a buffered pH compatible with physiological conditions, so as to
produce an aqueous solution, then rendering said solution sterile. The
formulations may be presented in unit or multi-dose containers, such as
sealed ampules or vials. Moreover, the formulations may be delivered by
any mode of injection, including, without limitation, epifascial,
intracapsular, intracutaneous, intramuscular, intraorbital,
intraperitoneal (particularly in the case of localized regional
therapies), intraspinal, intrasternal, intravascular, intravenous,
parenchymatous, or subcutaneous." The same means of administration may
be used in the process of the instant invention.
[0207] As is also disclosed in U.S. Pat. No. 6,541,509, "For
transdermal administration, the formulations of paclitaxel and
discodermolide (whether individual or combined) may be combined with
skin penetration enhancers, such as propylene glycol, polyethylene
glycol, isopropanol, ethanol, oleic acid, N-methylpyrrolidone, and the
like, which increase the permeability of the skin to the antineoplastic
agent, and permit the antineoplastic agent to penetrate through the
skin and into the bloodstream. The antineoplastic agent/enhancer
compositions also may be further combined with a polymeric substance,
such as ethylcellulose, hydroxypropyl cellulose, ethylene/vinylacetate,
polyvinyl pyrrolidone, and the like, to provide the composition in gel
form, which may be dissolved in a solvent such as methylene chloride,
evaporated to the desired viscosity, and then applied to backing
material to provide a patch." The same means of administration may be
used in the process of the instant invention.
[0208] As is also disclosed in U.S. Pat. No. 6,541,509, "It is
within the confines of the present invention that the formulations of
paclitaxel and discodermolide (whether individual or combined) may be
further associated with a pharmaceutically-acceptable carrier, thereby
comprising a pharmaceutical composition. The
pharmaceutically-acceptable carrier must be "acceptable" in the sense
of being compatible with the other ingredients of the composition, and
not deleterious to the recipient thereof. Examples of acceptable
pharmaceutical carriers include Cremophor.TM.. (a common vehicle for
Taxol), as well as carboxymethyl cellulose, crystalline cellulose,
glycerin, gum arabic, lactose, magnesium stearate, methyl cellulose,
powders, saline, sodium alginate, sucrose, starch, talc, and water,
among others. Formulations of the pharmaceutical composition may
conveniently be presented in unit dosage." The same means of
administration may be used in the process of the instant invention.
[0209] As is also disclosed in U.S. Pat. No. 6,541,509, "The
formulations of the present invention may be prepared by methods
well-known in the pharmaceutical art. For example, the active compound
may be brought into association with a carrier or diluent, as a
suspension or solution. Optionally, one or more accessory ingredients
(e.g., buffers, flavoring agents, surface active agents, and the like)
also may be added. The choice of carrier will depend upon the route of
administration. The pharmaceutical composition would be useful for
administering the antineoplastic agents of the present invention (i.e.,
paclitaxel and discodermolide, and their analogues and derivatives,
either in separate, individual formulations, or in a single, combined
formulation) to a subject to treat neoplasia. The antineoplastic agents
are provided in amounts that are effective to treat neoplasia in the
subject. These amounts may be readily determined by the skilled
artisan." Similar formulations may be used in the process of the
instant invention.
[0210] As is also disclosed in U.S. Pat. No. 6,541,509, "It is
also within the confines of the present invention that paclitaxel and
discodermolide be co-administered in combination with radiation therapy
or an antiangiogenic compound (either natural or synthetic). Examples
of antiangiogenic compounds with which paclitaxel and discodermolide
may be combined include, without limitation, angiostatin, tamoxifen,
thalidomide, and thrombospondin." Similar compositions may be used in
the process of the instant invention.
[0211] As is also disclosed in U.S. Pat. No. 6,541,509, "The
present invention further provides a synergistic combination of
antineoplastic agents. As defined above, `antineoplastic` refers to the
ability to inhibit or prevent the development or spread of a neoplasm,
and to limit, suspend, terminate, or otherwise control the maturation
and proliferation of cells in a neoplasm. As used herein, a
"synergistic combination of antineoplastic agents" refers to a
combination of antineoplastic agents that achieves a greater
antineoplastic effect than would otherwise result if the antineoplastic
agents were administered individually. Additionally, as described
above, the "antineoplastic agents" of the present invention are
paclitaxel and discodermolide, and their analogues and derivatives,
either in separate, individual formulations, or in a single, combined
formulation. Administration of paclitaxel in combination with
discodermolide unexpectedly results in a synergistic antineoplastic
effect by providing greater efficacy than would result from use of
either of the antineoplastic agents alone." Similar synergistic
combinations may be used in the process of the instant invention.
[0212] As is also disclosed in U.S. Pat. No. 6,541,509, "In the
synergistic combination of the present invention, paclitaxel and
discodermolide may be combined in a single formulation, such that the
amount of paclitaxel is in physical association with the amount of
discodermolide. This single, combined formulation may consist of an
oral formulation, containing amounts of both paclitaxel and
discodermolide, which may be orally administered to the subject, or a
liquid mixture, containing amounts of both paclitaxel and
discodermolide, which may be injected into the subject." Similar
synergistic combinations may be used in the process of the instant
invention.
[0213] As is also disclosed in U.S. Pat. No. 6,541,509,
"Alternatively, in the synergistic combination of the present
invention, a separate, individual formulation of paclitaxel may be
combined with a separate, individual formulation of discodermolide. For
example, an amount of paclitaxel may be packaged in a vial or unit
dose, and an amount of discodermolide may be packaged in a separate
vial or unit dose. A synergistic combination of paclitaxel and
discodermolide then may be produced by mixing the contents of the
separate vials or unit doses in vitro. Additionally, a synergistic
combination of paclitaxel and discodermolide may be produced in vivo by
co-administering to a subject the contents of the separate vials or
unit doses, according to the methods described above. Accordingly, the
synergistic combination of the present invention is not limited to a
combination in which amounts of paclitaxel and discodermolide are in
physical association with one another in a single formulation." Similar
synergistic combinations may be used in the process of the instant
invention.
[0214] As is also disclosed in U.S. Pat. No. 6,541,509, "The
synergistic combination of the present invention comprises an effective
antineoplastic amount of paclitaxel and an effective antineoplastic
amount of discodermolide. As used herein, an `effective antineoplastic
amount` of paclitaxel or discodermolide is an amount of paclitaxel or
discodermolide that is effective to ameliorate or minimize the clinical
impairment or symptoms of neoplasia in a subject, in either a single or
multiple dose. For example, the clinical impairment or symptoms of
neoplasia may be ameliorated or minimized by diminishing any pain or
discomfort suffered by the subject; by extending the survival of the
subject beyond that which would otherwise be expected in the absence of
such treatment; by inhibiting or preventing the development or spread
of the neoplasm; or by limiting, suspending, terminating, or otherwise
controlling the maturation and proliferation of cells in the neoplasm."
These comments are equally applicable to the process of the instant
invention, in which discodermolide is replaced by the magnetic
anti-mitotic compound of this invention.
[0215] As is also discussed in U.S. Pat. No. 6,541,509, "The
effective antineoplastic amounts of paclitaxel and discodermolide will
vary depending on the particular factors of each case, including the
type of neoplasm, the stage of neoplasia, the subject's weight, the
severity of the subject's condition, and the method of administration.
For example, effective antineoplastic amounts of paclitaxel (Taxol)
administered intraperitoneally may range from 1 to 10 mg/kg, and doses
administered intravenously may range from 1 to 3 mg/kg, or from 135
mg/m2 to 200 mg/m2. Nevertheless, the appropriate effective
antineoplastic amounts of paclitaxel and discodermolide can be readily
determined by the skilled artisan." These comments are equally
applicable to the process of the instant invention, in which
discodermolide is replaced by the magnetic anti-mitotic compound of
this invention
[0216] As is also disclosed in U.S. Pat. No. 6,541,509, "The
synergistic combination described herein may be useful for treating
neoplasia in a subject in need of treatment. Paclitaxel and
discodermolide, which comprise the synergistic combination of the
present invention, may be co-administered to a subject concurrently,
sequentially, or alternately, as described above. Moreover, the
paclitaxel and discodermolide of the present invention may be
administered to a subject by any of the methods, and in any of the
formulations, described above." These comments are equally applicable
to the process of the instant invention, in which discodermolide is
replaced by the magnetic anti-mitotic compound of this invention
[0217] By way of yet further illustration, and referring to
published United States patent application 2003/0235855 (the entire
disclosure of which is hereby incorporated by reference into this
specification), claims an assay for the detection of paclitaxel
resistant cells in human tumors. Claim 4 of this published patent
application, which is typical, claims: "An isolated tubulin amino acid
sequence comprising an amino acid sequence having at least one
mutation, the mutation selected from the group consisting of a mutation
at position 210, a mutation at position 214, a mutation at position
215, a mutation at position 216, a mutation at position 217, a mutation
at position 225, a mutation at position 228, a mutation at position
270, a mutation at position 273, a mutation at position 292, and a
mutation at position 365 and any combination thereof."
[0218] At page 1 of published United States patent application
2003/0235855, the importance of paclitaxel is discussed. It is
disclosed that "Paclitaxel (Taxol), Taxotere and other paclitaxel-like
drugs that are currently under development hold great promise for the
treatment of human cancer. Paclitaxel has shown remarkable activity
against breast and ovarian cancer, melanomas, non-small lung carcinoma,
esophogeal cancer, Kaposi's sarcoma, and some hematological
malignancies. It has been described as the most significant antitumor
drug developed in the last several decades and will, without doubt,
find widespread use in the treatment of cancer. However, as is true of
virtually all cancer chemotherapeutic drugs, patients responsive to
paclitaxel eventually relapse due to the emergence of drug resistant
tumor cells. Thus, there is a need in the art for methods to identify
paclitaxel-resistant tumor cells, for agents that allow such
identifications in a simple and cost effective way, and for methods for
to treat patients with paclitaxel resistant tumor cells." The solution
presented to this problem in such published patent application is also
described at page 1 thereof, wherein it is stated that: "The present
invention involves polynucleotide mutations which confer paclitaxel
resistance; mutant cells which are paclitaxel resistant; and methods to
determine paclitaxel resistance. The present invention also provides a
simple assay with sufficient sensitivity to detect drug resistant cells
in tumor biopsies by extracting polynucleotide from the tissue. The
extracted polynucleotide is then hybridized to mutant-specific PCR
primers and the mutant regions of tubulin are identified by selective
amplification. Once identified, a secondary treatment protocol can be
administered to the patient to aid in tumor treatment."
[0219] At pages 2 et seq. of published United States patent
application 2003/0235855, the inventor discloses that " . . . mutations
able to convert resistance to paclitaxel are clustered in several small
regions of beta-tubulin." In paragraphs 0022 et seq., it is disclosed
that: "The inventor has found that mutations able to confer resistance
to paclitaxel are clustered in several small regions of .beta.-tubulin
(Tables I-III) including I210T, T214A, L215H, L215R, L215F, L215A,
L215E, L215M, L215P, K216A, L217R, L217N, L217A, L225M, L228A, L228F,
L228H, F270C, L273V, Q292H, and V365D. Of these 21 identified and
sequenced mutant tubulins, 15 or 62% have a substitution at leucine
including locations 215, 217, 225, 228 and 273. Of the 15 total leucine
mutants, 7 or 46.7% occur at leu215, 3 or 20% occur at leu217, 3 or 20%
occur at leu228, 1 or 6.7% occur at leu225 and 1 or 6.7% occur at
leu273. The ability of 19 of the 21 total mutations to confer
paclitaxel resistance has been confirmed by transfecting mutant cDNAs
into wild-type cells."
[0220] It is also disclosed in published United States patent
application 2003/0235855 (commencing at page 3 thereof) that: "The
clustering of mutations affecting leucines is unusual and unexpected.
Also unexpected is the three relatively localized regions of mutation,
210-217, 225-228, and 270-273, and two isolated sites of mutations, 292
and 365. Although some of these regions appear distant in the primary
structure, they are actually close together in the tertiary structure
of .beta.-tubulin. The data support the hypothesis that the mutations
affect a critical interaction between tubulin subunits necessary for
microtubule assembly and that the mechanism of paclitaxel is to
facilitate this interaction." Thereafter, in the middle of page 3 of
such patent application, Table 1 is presented.
[0221] It is also disclosed in published United States patent
application 2003/0235855 (commencing at page 3 thereof) that: "Table V
below contains the corresponding .beta.-tubulin protein sequences for
the variants listed in Table I: L215H (Seq. No. 10); L215R (Seq. No.
11); L215F (Seq. No. 12); L217R (Seq. No. 13); L228F (Seq. No. 14); and
L228H (Seq. No. 15). All of these mutations result in amino acid
substitutions at 3 leucine residues that are within 14 amino acids of
one another." The aforementioned Seq. No. 10, 11, 12, 13, 14, and 15
are listed in this application's sequence listing as SEQ. ID. No. 293,
294, 295, 296, 297 and 298 respectively.
[0222] It is also disclosed in published United States patent
application 2003/0235855 (commencing at page 3 thereof) that: "Using
site-directed mutagenesis, the inventor has identified additional
mutations in the H6/H7 loop of beta tubulin (that contains L215 and
L217) that confer paclitaxel resistance. Table II lists the cell line,
a portion of the encoding region including the mutated codon and the
protein alteration." Thereafter, Table II is presented on page 3 of the
patent application.
[0223] It is also disclosed in published United States patent
application 2003/0235855 (commencing at page 4 thereof) that: "The
corresponding .beta.-tubulin protein sequences (see Table IV) are:
T214A (Seq. No. 24), L215A (Seq. No. 25), L215E (Seq. No. 26), L215M
(Seq. No. 27), L215P (Seq. No. 28), K216A (Seq. No. 29), L217A (Seq.
No. 30) and L228A (Seq. No. 31). The present invention also relates to
probes having at least 12 bases including the codon for the particular
amino acid substitution." The aforementioned Seq. No. 24, 25, 26, 27,
28, 29, 30 and 31 are listed in this application's sequence listing as
SEQ. ID. No. 299, 300, 301, 302, 303, 304, 305, and 306 respectively.
[0224] It is also disclosed in published United States patent
application 2003/0235855 (commencing at page 3 thereof) that: "More
recently, the inventor has found that the number of mutations that
confer resistance to paclitaxel are likely to be small and that most
are clustered in a small region of .beta.-tubulin. The likelihood that
only a relatively small number of mutations will cause paclitaxel
resistance is indicated by the observation that a random mutagenesis
approach to find new mutations is recapitulating mutations that have
already been found by classical genetics, and by the observation that
mutations reported in different laboratories using different cell lines
are beginning to show overlap. New mutants recently identified by the
inventor in both CHO cells, and in the human KB3 cervical carcinoma
cell line, are summarized in Table m. The fact that human mutations
fall into the same region as the CHO mutations in the tertiary
structure, combined with the observation that some mutations (not
reported in this application) in CHO cells affect residues that are
altered in human cell lines, supports the conclusion (based on
identical amino acid sequences for .beta.-tubulin in the two species)
that mutations identified in CHO cells are expected to confer drug
resistance in human cells. The nucleotide sequences encoding the new
mutants are shown in Table III.3 TABLE III" Thereafter, Table III is
represented on page 4.
[0225] It is also disclosed in published United States patent
application 2003/0235855 (commencing at page 4 thereof) that: "The new
corresponding mutant CHO .beta.-tubulin protein sequences (see Table
IV) are: 1210T (Ile to Thr at location 210) (Seq. No. 39), L217N (Leu
to Asn at location 217) (Seq. No. 40), F270C (Phe to Cys at location
270) (Seq. No. 41) and Q292H (Gln to His at location 292) (Seq. No.
42). The new corresponding mutant human .beta.-tubulin sequences are:
L225M (Leu to Met at location 225) (Seq. No.43), L273V (Leu to Val at
location 273) (Seq. No. 44) and V365D (Val to Asp at location 365)
(Seq. No. 45)." The aforementioned Seq. No.39, 40, 41, 42, 43, 44, and
45 are listed in this application's sequence listing as SEQ. ID. No.
307, 308, 309, 310, 311, 312, and 313 respectively.
[0226] It is also disclosed in published United States patent
application 2003/0235855 (commencing at page 4 thereof) that: "Table IV
lists all of the nucleic acid and protein sequences in sequence order
that are described in this application along with their sequence id
number and abbreviated amino acid mutation." Thereafter, Table IV is
presented on pages 4 et seq.
[0227] It is also disclosed in United States published patent
application 2003/0235855 (commencing at page 8 thereof) that: "Because
.alpha.-tubulin and .beta.-tubulin are similar proteins, similar
clustering of mutations are anticipated in .alpha.-tubulin in
paclitaxel resistant cells and .alpha.-tubulin PCR mutant primer
sequences can be constructed in a similar manner to the primers
presented herein for .beta.-tubulin in paclitaxel resistant tumor
cells."
[0228] It is also disclosed in United States published patent
application 2003/0235855 (commencing at page 8 thereof) that: "The
assays of the present invention were performed using Chinese hamster
ovary (CHO) cells selected for resistance to paclitaxel. It is
important to note that human and hamster tubulin have identical amino
acid sequences and the nucleotide sequences are highly homologous and
the nucleotide differences do not alter the amino acid sequence, and
therefore, the amino acid changes found in mutant CHO cells will also
confer resistance in humans."
[0229] It is also disclosed in United States published patent
application 2003/0235855 (commencing at page 8 thereof) that: "It has
been established that the most frequent mechanism of resistance to
paclitaxel occurs through mutations in tubulin that affect the
stability of the microtubules. These paclitaxel-resistant cells
assemble less microtubule polymer and are frequently hypersensitive to
other drugs such as vinblastine and vincristine that inhibit
microtubule assembly."
[0230] It is also disclosed in United States published patent
application 2003/0235855 (commencing at page 8 thereof) that: "A model
to explain these observations is provided in FIG. 1. The assay of the
present invention can be used to identify many or most patients in
danger of relapse due to tumor cell mutation and allow administration
of alternate or additional treatment protocols using such agents as
vinblastine or vincristine which are highly effective in eliminating
the paclitaxel-resistant cells."
[0231] It is also disclosed in United States published patent
application 2003/0235855 (commencing at page 8 thereof) that: "The
identification of the mutations and the clustering of mutations within
the tubulin genes provide the data to construct highly efficient assays
to detect these mutations in patients. Until now, there has been no
method available to easily detect paclitaxel resistant cells in human
tumors. The present methods or assays involve the design and use of
allele-specific oligonucleotide primers for PCR."
[0232] It is also disclosed in United States published patent
application 2003/0235855 (commencing at page 8 thereof) that: "One such
assay has been successfully confirmed for primers using the leu217 to
arg mutation shown in FIG. 2. The wild-type primer
(CTCCGTAGGTGGGCGTGGTGA (Seq. No.46)) is able to amplify wild-type DNA;
but because of a 3' mismatch with the mutant allele, it fails to
amplify mutant DNA. Conversely, the mutant primer (CTCCGTAGGTGGGCGTGCGC
(Seq. No. 47)) is able to amplify mutant DNA, but does not amplify the
wild-type DNA because of 3' mismatch (underlined). The mutant primer
also contains an intentional mismatch to both wild-type and mutant DNA
at the third nucleotide from the 3' end (underlined) in order to
enhance its allele specificity." The aforementioned Seq. No. 46 and 47
are listed in this application's sequence listing as SEQ. ID. No. 314
and 315 respectively.
[0233] It is also disclosed in United States published patent
application 2003/0235855 (commencing at page 8 thereof) that: "Thus,
allele-specific primers covering most potential mutations can be used
individually or a `cocktails` to detect the mutations in a single or
very few PCR reactions. Alternatively, assays involving restriction
enzyme digestion or allele-specific hybridization using the mutant DNA
sequences can be used, but may lack the sensitivity and simplicity of
the PCR assay."
[0234] It is also disclosed in United States published patent
application 2003/0235855 (commencing at page 9 thereof) that: "The high
frequency of mutations affecting only a few leucine residues of
.alpha.-tubulin in paclitaxel-resistant mutants was unexpected.
Currently, there is no rational basis for predicting how an individual
patient will respond to paclitaxel therapy. An initial assay of the
tumor for mutations in tubulin that confer paclitaxel resistance would
help clinicians decide whether the patient is a good candidate for
paclitaxel therapy and save needless morbidity with a treatment that is
unlikely to be effective. It would also allow the clinician to choose
an alternative or additional therapy at an early time in the disease
progression, thereby enhancing the survival of the patient."
[0235] It is also disclosed in United States published patent
application 2003/0235855 (commencing at page 9 thereof) that: "Mammals
express 6 .alpha.- and 6 .beta.-tubulin genes, which are the targeted
genes. To further optimize assays, it may be necessary to determine
which tubulin isotype is involved in paclitaxel resistance for each
type of tumor in certain instances. The tubulin is expressed in a
tissue specific manner, with some forms restricted to certain tissues,
which are widely disclosed in the prior art literature. Furthermore,
the present inventors have found in CHO cells that the most abundant
tubulin isotype is the one always involved in conferring resistance,
which was completely unexpected. Thus, one skilled in the art must
merely find the most abundant isotype for each type of tumor, which is
disclosed in many technical journal and prior art references."
[0236] It is also disclosed in United States published patent
application 2003/0235855 (commencing at page 9 thereof) that:
"Paclitaxel is the prototype for a novel class of agents that inhibit
cells in mitosis by promoting and stabilizing microtubule assembly.
Early studies with this compound demonstrated that it binds to
microtubules in a 1:1 stoichiometry with tubulin heterodimers
(Manfredi, J. J., Parness, J., and Horwitz, S. B. (1981) J. Cell Biol.
94, 688-696) and inhibits microtubule disassembly. It is also able to
induce microtubule assembly both in vitro and in vivo and induces
microtubule bundle formation in treated cells (Schiff, P. B., Fant, J.,
and Horwitz, S. B. (1979) Nature 277, 665-667 and Schiff, P. B., and
Horwitz, S. B. (1980) Proc. Natl. Acad. Sci. U.S.A. 77, 1561-1565).
Recent interest in this and related compounds has been fueled by
clinical studies demonstrating remarkable activity of paclitaxel
against a number of malignant diseases (Rowinsky, E. K., and Donehower,
R. C. (1995) N. E. J. Med. 332, 1004-1014). Although still in clinical
trials, the demonstrated activity of paclitaxel in phase II studies has
led to FDA approval for its use in refractory cases of breast and
ovarian cancer. As more patients are treated with this drug, clinical
resistance is expected to become an increasingly significant problem."
[0237] It is also disclosed in United States published patent
application 2003/0235855 (commencing at page 9 thereof) that: "The
mechanisms by which tumor cells acquire resistance to paclitaxel are
not fully understood. Cell culture studies have shown that paclitaxel
is a substrate for the multidrug resistance pump (gP170), and cells
selected for high levels of resistance to the drug have increased gP170
(Casazza, A. M., and Fairchild, C. R. (1996) Cancer Treatment &
Research 87, 149-71). Nevertheless, it has yet to be demonstrated that
this mechanism is significant in paclitaxel refractory tumors. Indeed,
the remarkable efficacy of paclitaxel in early clinical studies of
patients who were pretreated with Adriamycin, a well known substrate
for gP170, argues that the multidrug resistance (mdr) phenotype may not
be as clinically prevalent as had initially been anticipated (Schiff,
P. B., and Horwitz, S. B. (1980) Proc. Natl. Acad. Sci. U.S.A. 77,
1561-1565)."
[0238] It is also disclosed in United States published patent
application 2003/0235855 (commencing at page 9 thereof) that:
"Additional mechanisms of resistance to paclitaxel have been reported.
For example, several laboratories have provided evidence that changes
in the expression of specific .beta.-tubulin genes are associated with
paclitaxel resistance in cultured tumor cell lines (Haber, M.,
Burkhart, C. A., Regl, D. L., Madafiglio, J., Norris, M. D., and
Horwitz, S. B. (1995) J. Biol. Chem. 270, 31269-75; Jaffrezou, J. P.,
Dumontet, C., Derry, W. B., Duran, G., Chen, G., Tsuchiya, E., Wilson,
L., Jordan, M. A., and Sikic, B. I. (1995) Oncology Res. 7, 517-27;
Kavallaris, M., Kuo, D. Y. S., Burkhart, C. A., Regl, D. L., Norris, M.
D., Haber, M., and Horwitz, S. B. (1997) J. Clin. Invest. 100, 1282-93;
and Ranganathan, S., Dexter, D. W., Benetatos, C. A., and Hudes, G. R.
(1998) Biochim. Biophys. Acta 1395, 237-245). More recently, a report
describing mutations in .beta.-tubulin that make the protein
unresponsive to paclitaxel has appeared (Giannakakou, P., Sackett, D.
L., Kang, Y.-K., Zhan, Z., Buters, J. T. M., Fojo, T., and Poruchynsky,
M. S. (1997) J. Biol. Chem. 272, 17118-17125). To date, however, there
is little evidence that any of the mechanisms described in cell culture
cause paclitaxel resistance in human tumors."
[0239] It is also disclosed in United States published patent
application 2003/0235855 (commencing at page 9 thereof) that "The
inventor's own studies have described a resistance mechanism mediated
by tubulin alterations that affect microtubule assembly (Cabral, F.,
and Barlow, S. B. (1991) Pharmac. Ther. 52, 159-171). Based on mutant
properties and drug cross-resistance patterns, it is proposed that
these changes in microtubule assembly could compensate for the presence
of the drug (Cabral, F., Brady, R. C., and Schibler, M. J. (1986) Ann.
N.Y. Acad. Sci. 466, 745-756). The inventors were later able to
directly demonstrate that paclitaxel resistant Chinese hamster ovary
(CHO) cells have diminished microtubule assembly compared to wild-type
controls (Minotti, A. M., Barlow, S. B., and Cabral, F. (1991) J. Biol.
Chem. 266, 3987-3994). Thus, isolation of paclitaxel resistant mutants
provides an opportunity to study mutations that not only give
information about the mechanisms of drug action and resistance, but
also give structural information about regions of tubulin that are
involved in assembly."
[0240] It is also disclosed in United States published patent
application 2003/0235855 (commencing at page 10 thereof) that: "The
inventors have now sequenced 9 mutant .beta.-tubulin alleles and find
that the mutations cluster at a site that is likely to be involved in
lateral or longitudinal interactions during microtubule assembly.
Remarkably, these mutations are present in the H6H7 region of tubulin.
Previously, it was believed that this region was not associated with
paclitaxel binding. However, the inventors have isolated mutants in the
H6H7 region, which are directly related to paclitaxel resistence."
[0241] It is also disclosed in United States published patent
application 2003/0235855 (commencing at page 10 thereof) that: "There
is some significance to the fact that all the mutated residues are
leucines--it certainly indicates that the changes that produce taxol
resistance are not random. One possibility is that the leucines define
a structural motif (e.g., analogous to a leucine zipper, but clearly
distinct) that forms an interaction site with a neighboring subunit. A
more trivial explanation is that the leucines are among the least
critical residues in the region and are therefore better able to
tolerate changes that produce the kind of subtle alterations in tubulin
assembly that give resistance to taxol. The fact that the 3 leucines
are highly conserved throughout all species and that the conservation
extends to alpha and even gamma tubulin would tend to argue for the
former alternative, but it will take a lot of further experimentation
before the true significance can be elucidated."
[0242] It is also disclosed in United States published patent
application 2003/0235855 (commencing at page 10 thereof) that: "All 3
leucines in hamster are encoded by a CTC. Thus, a single base change
can lead to substitution of histidine, arginine, phenylalanine,
isoleucine, valine, or pro line. Only his, arg, and phe were isolated
in the mutant cell lines. By transfection of cDNA altered by
site-directed mutagenesis, is has been found that ile and val do not
produce taxol resistance, probably because they do not perturb the
structure of the microtubule sufficiently to produce resistance.
Proline substitution can cause resistance, but appears to do so when
expressed at very low levels. Moreover, the inventors have not been
able to express it at high levels. This suggests that pro was not
isolated in the mutant cell lines because it disrupts the structure of
microtubules too severely for the cells to survive."
[0243] It is also disclosed in United States published patent
application 2003/0235855 (commencing at page 10 thereof) that: "The
codons for leucine in human DNA are CTG at positions 215 and 217, and
CTT at position 228. Single nucleotide changes will produce the same
amino acid substitutions at 228, but a different set (valine,
methionine, glutamine, arginine, or proline) at 215 and 217. Thus, 2
new possibilities (methionine and glutamine) might be found at 215 or
217 in human cells resistant to taxol. Of the two, methionine has been
tested by transfection and it turns out to produce borderline
resistance even at high levels of expression. A glutamine substitution
has not yet been tested and should therefore be considered a
presumptive candidate for producing resistance."
A Preferred Anti-Mitotic Compound
[0244] In this section of the specification, a preferred
compound is discussed. The preferred compound of this embodiment of the
invention is an anti-mitotic compound. Anti-mitotic compounds are known
to those skilled in the art. Reference may be had, e.g., to U.S. Pat.
No. 6,723,858 (estrogenic compounds as anti-mitotic agents), U.S. Pat.
No. 6,528,676 (estrogenic compounds as anti-mitotic agents), U.S. Pat.
No. 6,350,777 (anti-mitotic agents which inhibit tubulin
polymerization), U.S. Pat. No. 6,162,930 (anti-mitotic agents which
inhibit tubulin polymerization), U.S. Pat. No. 5,892,069 (estrogenic
compounds as anti-mitotic agents), U.S. Pat. No. 5,886,025
(anti-mitotic agents which inhibit tubulin polymerization), U.S. Pat.
No. 5,661,143 (estrogenic compounds as anti-mitotic agents), U.S. Pat.
No. 3,997,506 (anti-mitotic derivatives of thiocolchicine), and the
like. The entire disclosure of each of these United States patents
applications is hereby incorporated by reference into this
specification.
[0245] These prior art anti-mitotic agents may be modified, in
accordance with the process of this invention, to make them "magnetic,"
as that term is defined in this specification. In the next section of
this specification, a process for modifying prior art taxanes to make
them "magnetic" is described.
Preparation and Use of Magnetic Taxanes
[0246] In this portion of the specification, applicants will
describe the preparation of certain magnetic taxanes that may be used
in one or more of the processes of his invention. The process that is
used to make such taxanes magnetic and/or water soluble may also be
used to make other anti-mitotic compounds magnetic and/or water
soluble.
[0247] In one embodiment of the invention, a biologically
active substrate is linked to a magnetic carrier particle. An external
magnetic field may then be used to increase the concentration of a
magnetically linked drug at a predetermined location.
[0248] One method for the introduction of a magnetic carrier
particle involves the linking of a drug with a magnetic carrier. While
some naturally occurring drugs inherently carry magnetic particles
(ferrimycin, albomycin, salmycin, etc.), it is more common to generate
a synthetic analog of the target drug and attach the magnetic carrier
through a linker.
Functionalized Taxanes
[0249] Paclitaxel and docetaxel are members of the taxane
family of compounds. A variety of taxanes have been isolated from the
bark and needles of various yew trees
[0250] In one embodiment of the invention, such a linker is
covalently attached to at least one of the positions in taxane.
[0251] It is well known in the art that the northern hemisphere
of taxanes has been altered without significant impact on the
biological activity of the drug. Reference may be had to Chapter 15 of
Taxane Anticancer Agents, Basic Science and Current Status, edited by
G. George et al., ACS Symposium Series 583, 207.sup.th National Meeting
of the American Chemical Society, San Diego, Calif. (1994).
Specifically the C-7, C-9, and C-10 positions of paclitaxel have been
significantly altered without degrading the biological activity of the
parent compound. Likewise the C-4 position appears to play only a minor
role. The oxetane ring at C-4 to C-5 has been shown to be critical to
biological activity. Likewise, certain functional groups on the C-13
sidechain have been shown to be of particular importance.
[0252] In one embodiment of the invention, a position within
paclitaxel is functionalized to link a magnetic carrier particle. A
number of suitable positions are presented below. It should be
understood that paclitaxel is illustrated in the figures below, but
other taxane analogs may also be employed. Attachment at C-4
[0253] C-4 taxane analogs have been previously generated in the
art. A wide range of methodologies exist for the introduction of a
variety of substituents at the C-4 position. By way of illustration,
reference may be had to "Synthesis and Biological Evaluation of Novel
C-4 Aziridine-Bearing Paclitaxel Analogs" by S. Chen et al., J. Med.
Chem. 1995, vol 38, pp 2263.
[0254] The secondary (C-13) and tertiary (C-1) alcohols of
7-TES baccatin were protected using the procedure of Chen (J. Org.
Chem. 1994, vol 59, p 6156) while simultaneously unmasking the alcohol
at C-4. The resulting product was treated with a chloroformate to yield
the corresponding carboxylate. Removal of the silyl protecting groups
at C-1, C-7, and C-13, followed by selective re-protection of the C-7
position gave the desired activated carboxylate. The compound was then
treated with a suitable nucleophile (in the author's case,
ethanolamine) to produce a C-4 functionalized taxane. The C-13
sidechain was installed using standard lactam methodology.
[0255] This synthetic scheme thus provides access to a variety
of C-4 taxane analogs by simply altering the nucleophile used. In one
embodiment of the instant invention, the nucleophile is selected so as
to allow the attachment of a magnetic carrier to the C-4 position.
Attachment at C-7
[0256] The C-7 position is readily accessed by the procedures
taught in U.S. Pat. No. 6,610,860. The alcohol at the C-10 position of
10-deacetylbaccatin III was selectively protected. The resulting
product was then allowed to react with an acid halide to produce the
corresponding ester by selectively acylating the C-7 position over the
C-13 alcohol. Standard lactam methodology allowed the installation of
the C-13 sidechain. In another embodiment, baccatin III, as opposed to
its deacylated analog, is used as the starting material.
[0257] Other C-7 taxane analogs are disclosed in U.S. Pat. Nos.
6,610,860; 6,359,154; and 6,673,833, the contents of which are hereby
incorporated by reference.
Attachment at C-9
[0258] It has been established that the C-9 carbonyl of
paclitaxel is relatively chemically inaccessible, although there are
exceptions (see, for example, Tetrahedron Lett. Vol 35, p 4999).
However, scientists gained access to C-9 analogs when
13-acetyl-9-dihydrobaccatin III was isolated from Taxus candidensis
(see J. Nat. Products, 1992, vol 55, p 55 and Tetrahedron Lett. 1992,
vol 33, p 5173). This triol is currently used to provide access to a
variety of such C-9 analogues.
[0259] In chapter 20 of Taxane Anticancer Agents, Basic Science
and Current Status, (edited by G. George et al., ACS Symposium Series
583, 207.sup.th National Meeting of the American Chemical Society, San
Diego, Calif. (1994)) Klein describes a number of C-7/C-9 taxane
analogs. One of routes discussed by Klein begins with the selective
deacylation of 13-acetyl-9-dihydrobaccatin III, followed by the
selective protection of the C7 alcohol as the silyl ether. A standard
lactam coupling introduced the C-13 sidechain. The alcohols at C-7 and
C-9 were sufficiently differentiated to allow a wide range of analogs
to be generated. "In contrast to the sensitivity of the C-9 carbonyl
series under basic conditions, the 9(R)-dihydro system can be treated
directly with strong base in order to alkylate the C-7 and/or the C-9
hydroxyl groups."
[0260] One skilled in the art may adapt Klein's general
procedures to install a variety of magnetic carriers at these
positions. Such minor adaptations are routine for those skilled in the
art.
Attachment at C-7 and C-9
[0261] Klein also describes a procedure wherein
13-acetyl-9-dihydrobaccatin III is converted to 9-dihydrotaxol.
Reference may be had to "Synthesis of 9-Dihydrotaxol: a Novel Bioactive
Taxane" by L. L. Klein in Tetrahedron Lett. Vol 34, pp 2047-2050. An
intermediate in this synthetic pathway is the dimethylketal of
9-dihydrotaxol.
[0262] In one embodiment, the procedure of Klein is followed
with a carbonyl compound other than acetone to bind a wide variety of
groups to the subject ketal. Supplemental discussion of C-9 analogs is
found in "Synthesis of 9-Deoxotaxane Analogs" by L. L. Klein in
Tetrahedron Lett. Vol 35, p 4707 (1994).
Attachment at C-10
[0263] In one embodiment of the invention, the C-10 position is
functionalized using the procedure disclosed in U.S. Pat. No.
6,638,973. This patent teaches the synthesis of paclitaxel analogs that
vary at the C-10 position. A sample of 10-deacetylbaccatin III was
acylated by treatment with propionic anhydride. The C-13 sidechain was
attached using standard lactam methodology after first performing a
selective protection of the secondary alcohol at the C-7 position. In
one embodiment of the invention, this procedure is adapted to allow
access to a variety of C-10 analogues of paclitaxel.
[0264] In one embodiment an anhydride is used as an
electrophile. In another embodiment, an acid halide is used. As would
be apparent to one of ordinary skill in the art, a variety of
electrophiles could be employed. Siderophores
[0265] In one embodiment, a member of the taxane family of
compounds is attached to a magnetic carrier particle. Suitable carrier
particles include siderophores (both iron and non-iron containing),
nitroxides, as well as other magnetic carriers.
[0266] Siderophores are a class of compounds that act as
chelating agents for various metals. Most organisms use siderophores to
chelate iron (III) although other metals may be exchanged for iron
(see, for example, Exchange of Iron by Gallium in Siderophores by
Emergy, Biochemistry 1986, vol 25, pages 4629-4633). Most of the
siderophores known to date are either catecholates or hydroxamic acids.
[0267] Representative examples of catecholate siderophores
include the albomycins, agrobactin, parabactin, enterobactin, and the
like.
[0268] Examples of hydroxamic acid-based siderophores include
ferrichrome, ferricrocin, the albomycins, ferrioxamines, rhodotorulic
acid, and the like. Reference may be had to Microbial Iron Chelators as
Drug Delivery Agents by M. J. Miller et al., Acc. Chem. Res. 1993, vol
26, pp 241-249; Structure of Des(diserylglycyl)ferrirhodin, DDF, a
Novel Siderophore from Aspergillus ochraceous by M. A. F. Jalal et al.,
J. Org. Chem. 1985, vol 50, pp 5642-5645; Synthesis and Solution
Structure of Microbial Siderophores by R. J. Bergeron, Chem. Rev. 1984,
vol 84, pp 587-602; and Coordination Chemistry and Microbial Iron
Transport by K. N. Raymond, Acc. Chem. Res., 1979, vol 12, pp 183-190.
The synthesis of a retrohydroxamate analog of ferrichrome is described
by R. K. Olsen et al. in J. Org. Chem. 1985, vol 50, pp 2264-2271.
[0269] In "Total Synthesis of Desferrisalmycin" (M. J. Miller
et al. in J. Am. Chem. Soc. 2002, vol 124 pp 15001-15005), a natural
product is synthesized that contains a siderophore. The author states
"siderophores are functionally defined as low molecular mass molecules
which acquire iron (III) from the environment and transport it into
microganisms. Because of the significant roles they play in the active
transport of physiologically essentially iron (III) through microbe
cell members, it is not surprising that siderophores-drug conjugates
are attracting more and more attention from both medicinal chemists and
clinical researchers as novel drug delivery systems in the war against
microbial infections, especially in an area of widespread emergency of
multidrug-resistance (MDR) strains. There have been three families of
compounds identified as natural siderophore-drug conjugates, including
ferrimycin, albomycin, and salmycin." In a related paper, Miller
describes the use of siderophores as drug delivery agents (Acc. Chem.
Res. 1993, vol 26, pp 241-249. Presumably, the siderophore acts as a
"sequestering agents [to] facilitate the active transport of chelated
iron into cells where, by modification, reduction, or siderophore
decomposition, it is released for use by the cell." Miller describes
the process of tethering a drug to a sidrophore to promote the active
transport of the drug across the cell membrane.
[0270] In "The Preparation of a Fully Differentiated
`Multiwarhead` Sidrophore Precursor", by M. J. Miller et al (J. Org.
Chem. 2003, vol 68, pp 191-194) a precursor is disclosed which allows
for a drug to be tethered to a sidrophore. In one embodiment, the route
disclosed by Miller is employed to provide a variety of siderophores of
similar structure. The synthesis of similar hydroxamic acid-based
siderophores is discussed in J. Org. Chem. 2000, vol 65 (Total
Synthesis of the Siderophore Danoxamine by M. J. Miller et al.), pp
4833-4838 and in the J. of Med. Chem. 1991, vol 32, pp 968-978 (by M.
J. Miller et al.).
[0271] A variety of fluorescent labels have been attached to
ferrichrome analogues in "Modular Fluorescent-Labeled Siderophore
Analogues" by A. Shanzer et al. in J. Med. Chem. 1998, vol 41,
1671-1678. The authors have developed a general methodology for such
attachments.
[0272] As discussed above, functionalized ferrichrome analogs
have been previous generated, usually using basic amine acids
(glycine). In one embodiment, functionality is introduced using an
alternative amine acid (such as serine) in place of the central glycine
residue. This provides a functional group foothold from which to base a
wide variety of analogs. Using traditional synthetic techniques,
various linkers are utilized so as to increase or decrease the distance
between the magnetic carrier and the drug.
[0273] As would be apparent to one of ordinary skill in the
art, the above specified techniques are widely applicable to a variety
of substrates. By way of illustration, and not limitation, a number of
magnetic taxanes are shown below. Nitroxides
[0274] Another class of magnetic carriers is the nitroxyl
radicals (also known as nitroxides). Nitroxyl radicals a "persistent"
radials that are unusually stable. A wide variety of nitroxyls are
commercially available. Their paramagnetic nature allows them to be
used as spin labels and spin probes.
[0275] In addition to the commercially available nitroxyls,
other paramagnetic radical labels have been generated by acid catalyzed
condensation with 2-Amino-2-methyl-1-propanol followed by oxidation of
the amine.
[0276] One of ordinary skill in the art could use the teachings
of this specification to generate a wide variety of suitable
carrier-drug complexes. The following table represents but a small
sampling of such compounds. TABLE-US-00003 R1 R2 R3 R4 F1, Y = CH2, H
Ac COPh n = 0 to 20 Ac F1, Y = CH2, Ac COPh n = 0 to 20 Ac H F1, Y =
CH2, COPh n = 0 to 20 Ac H Ac F1, Y = CH2, n = 0 to 20 H H Ac Boc F1, Y
= CH2, H Ac Boc n = 0 to 20 H F1, Y = CH2, Ac Boc n = 0 to 20 H H F1, Y
= CH2, Boc n = 0 to 20 H H Ac F1, Y = CH2, n = 0 to 20 F1, Y = NH or H
Ac COPh NR, n = 0 to 20 Ac F1, Y = NH or Ac COPh NR, n = 0 to 20 Ac H
F1, Y = NH or COPh NR, n = 0 to 20 Ac H Ac F1, Y = NH or NR, n = 0 to
20 H H Ac Boc F1, Y = NH or H Ac Boc NR, n = 0 to 20 H F1, Y = NH or Ac
Boc NR, n = 0 to 20 H H F1, Y = NH or Boc NR, n = 0 to 20 H H Ac F1, Y
= NH or NR, n = 0 to 20 N1, n = 0 to 20 H Ac COPh Ac N1, n = 0 to 20 Ac
COPh Ac H N1, n = 0 to 20 COPh Ac H Ac N1, n = 0 to 20 H H Ac Boc N1, n
= 0 to 20 H Ac Boc H N1, n = 0 to 20 Ac Boc H H N1, n = 0 to 20 Boc H H
Ac N1, n = 0 to 20 N2, n = 0 to H Ac COPh 20, X = O or NH Ac N2, n = 0
to Ac COPh 20, X = O or NH Ac H N2, n = 0 to COPh 20, X = O or NH Ac H
Ac N2, n = 0 to 20, X = O or NH H H Ac Boc N2, n = 0 to H Ac Boc 20, X
= O or NH H N2, n = 0 to Ac Boc 20, X = O or NH H H N2, n = 0 to Boc
20, X = O or NH H H Ac N2, n = 0 to 20, X = O or NH N3, n = 0 to H Ac
COPh 20, X = O or NH Ac N3, n = 0 to Ac COPh 20, X = O or NH Ac H N3, n
= 0 to COPh 20, X = O or NH Ac H Ac N3, n = 0 to 20, X = O or NH H H Ac
Boc N3, n = 0 to H Ac Boc 20, X = O or NH H N3, n = 0 to Ac Boc 20, X =
O or NH H H N3, n = 0 to Boc 20, X = O or NH H H Ac N3, n = 0 to 20, X
= O or NH F2 or F3 H Ac COPh Ac F2 or F3 Ac COPh Ac H F2 or F3 COPh Ac
H Ac F2 or F3 F2 or F3 H Ac Boc H F2 or F3 Ac Boc H H F2 or F3 Boc H H
Ac F2 or F3
[0277] The prior disclosure illustrates how one may modify
prior art taxanes to make them magnetic. As will be apparent to those
skilled in the art, one may similarly modify other modifiable prior art
anti-mitotic compounds to make them magnetic.
Other Modifiable Prior Art Compounds
[0278] Many anti-mitotic compounds that may be modified in
accordance with the process of this invention are described in the
prior art. One of these compounds is discodermolide; and it is
described in U.S. Pat. No. 6,541,509, the entire disclosure of which is
hereby incorporated by reference into this specification. Reference may
be had, e.g., to column 10 of such patent and to the references 10, 11,
12, and 13 cited in such patent.
[0279] The reference 12 in U.S. Pat. No. 6,541,509 is to an
article by R. J. Kowalski et al., "The Microtubule-Stabilizing Agent
Discodermolide Competitively Inhibits the Binding of Paclitaxel(Taxol)
to Tubulin Monomers, . . . " Mol. Pharacol. 52:613-22, 1997. At page 2
of the Kowalski et al. patent, a formula for discodermolide is
presented with 29 numbered carbon atoms (see FIG. 1).
[0280] Elsewhere in this specification, applicants teach how to
make "magnetic taxanes" by incorporating therein various linker groups
and/or siderophores. The same linker groups and/or siderphores may be
utilized via substantially the same process to make the discodermolide
magnetic in the same manner.
[0281] As is disclosed elsewhere in this specification,
siderphores are a class of compounds that act as chelating agents for
various metals. When used to make "magnetic taxanes," they are
preferably bound to either the C7 and/or the C10 carbons of the
paclitaxels. They can similarly be used to make "magnetic
discodermolides," but in this latter case they should be bonded at the
C17 carbon of discodermolide, to which a hydroxyl group is bound. The
same linker that is used to link the C7/C10 carbon of the taxane to the
siderphore may also be sued to link the C17 carbon of the discodermolde
to the siderphore.
[0282] In one embodiment, the "siderohophoric group" disclosed
in U.S. Pat. No. 6,310,058, the entire disclosure of which is hereby
incorporated by reference into this specification, is utilized. The
siderophoric group is of the formula
--(CH.sub.2).sub.m--N(OH)--C(O)--(CH.sub.2)n-(CH.dbd.CH).sub.o--CH3,
wherein m is an integer of from 2 to 6, n is 0 or an integer of from 1
to 22, and o is 0 or an integer 1 to 4, provided that m+o is no greater
than 25.
[0283] In another embodiment, "magnetic epothilone A" and/or
"magnetic epotilone B" is also made by a similar process. As is also
disclosed in the FIG. 1 of the Kowalski et al. article (see page 614),
and in the formula depicted, the epothilone A exists when, in such
formula, the alkyl group ("R") is hydrogen, whereas the epothilone B
exists when, in such formula, the alkyl group is methyl. In either
case, one can make magnetic analogs of these compounds by using the
same siderophores and the same linkers groups but utilizing them at a
different site. One may bind such siderophores at either the number 3
carbon (which a hydroxyl group is bound) and/or the number 7 carbon (to
which another hydroxyl group is bound.).
[0284] Without wishing to be bound to any particular theory,
applicants believe that the binding of the siderphores at the specified
carbon sites imparts the required magnetic properties to such modified
materials without adversely affecting the anti-mitotic properties of
the material. In fact, in some embodiment, the anti-mitotic properties
of the modified magnetic materials surpass the anti-mitotic properties
of the unmodified materials.
[0285] This is unexpected; for, if the same linker groups
and/or siderophores are used to bind to other than the specified carbon
atoms, materials with no or substantially poorer anti-mitotic
properties are produced.
[0286] Thus, e.g., and referring to the magnetic taxanes
described elsewhere in this specification (and also to FIG. 1 of the
Kowalski et al. article), one should not link such siderphores to any
carbons on the pendant aromatic rings. Thus, e.g., and referring to the
discodermolide structure, one should not link siderphores to any of 1,
2, 3, or 4 carbon atoms. Thus, e.g., and referring to the epothilones,
one should not link the siderphores to any carbon the ring structure
containing sulfur and nitrogen.
[0287] By way of further illustration, and referring to U.S.
Pat. Nos. 5,504,074, 5,661,143, 5,892,069, 6,528,676, and 6,723,858
(the entire disclosure of each of which is hereby incorporated by
reference into this specification), one may modify estradiol and
estradiol metabolites to make them magnetic in accordance with the
process of this invention. As is disclosed in U.S. Pat. No. 6,723,858
(the entire disclosure of which is hereby incorporated by reference
into this specification, "Cell mitosis is a multi-step process that
includes cell division and replication (Alberts, B. et al. In The Cell,
pp. 652-661 (1989); Stryer, E. Biochemistry (1988)). Mitosis is
characterized by the intracellular movement and segregation of
organelles, including mitotic spindles and chromosomes. Organelle
movement and segregation are facilitated by the polymerization of the
cell protein tubulin. Microtubules are formed from alpha. and .beta.
tubulin polymerization and the hydrolysis of guanosine triphosphate
(GTP). Microtubule formation is important for cell mitosis, cell
locomotion, and the movement of highly specialized cell structures such
as cilia and flagella."
[0288] As is also disclosed in U.S. Pat. No. 6,723,858,
"Microtubules are extremely labile structures that are sensitive to a
variety of chemically unrelated anti-mitotic drugs. For example,
colchicine and nocadazole are anti-mitotic drugs that bind tubulin and
inhibit tubulin polymerization (Stryer, E. Biochemistry (1988)). When
used Cell mitosis is a multi-step process that includes cell division
and replication (Alberts, B. et al. In The Cell, pp. 652-661 (1989);
Stryer, E. Biochemistry (1988)). Mitosis is characterized by the
intracellular movement and segregation of organelles, including mitotic
spindles and chromosomes. Organelle movement and segregation are
facilitated by the polymerization of the cell protein tubulin.
Microtubules are formed from alpha. and .beta. tubulin polymerization
and the hydrolysis of guanosine triphosphate (GTP). Microtubule
formation is important for cell mitosis, cell locomotion, and the
movement of highly specialized cell structures such as cilia and
flagella. Microtubules are extremely labile structures that are
sensitive to a variety of chemically unrelated anti-mitotic drugs. For
example, colchicine and nocadazole are anti-mitotic drugs that bind
tubulin and inhibit tubulin polymerization (Stryer, E. Biochemistry
(1988)). When used alone or in combination with other therapeutic
drugs, colchicine may be used to treat cancer (WO-9303729-A, published
Mar. 4, 1993; J 03240726-A, published Oct. 28, 1991), alter
neuromuscular function, change blood pressure, increase sensitivity to
compounds affecting sympathetic neuron function, depress respiration,
and relieve gout (Physician's Desk Reference, Vol. 47, p. 1487,
(1993))."
[0289] As is also disclosed in U.S. Pat. No. 6,723,858,
"Estradiol and estradiol metabolites such as 2-methoxyestradiol have
been reported to inhibit cell division (Seegers, J. C. et al. J.
Steroid Biochem. 32, 797-809 (1989); Lottering, M-L. et al. Cancer Res.
52, 5926-5923(1992); Spicer, L. J. and Hammond, J. M. Mol. and Cell.
Endo. 64, 119-126 (1989); Rao, P. N. and Engelberg, J. Exp. Cell Res.
48, 71-81 (1967)). However, the activity is variable and depends on a
number of in vitro conditions. For example, estradiol inhibits cell
division and tubulin polymerization in some in vitro settings (Spicer,
L. J. and Hammond, J. M. Mol. and Cell. Endo. 64, 119-126 (1989);
Ravindra, R., J. Indian Sci. 64 (c) (1983)), but not in others
(Lottering, M-L. et al. Cancer Res. 52, 5926-5923 (1992); Ravindra, R.,
J. Indian Sci. 64 (c) (1983)). Estradiol metabolites such as
2-methoxyestradiol will inhibit cell division in selected in vitro
settings depending on whether the cell culture additive phenol red is
present and to what extent cells have been exposed to estrogen.
(Seegers, J. C. et al. Joint NCI-IST Symposium. Biology and Therapy of
Breast Cancer. Sep. 25, Sep. 27, 1989, Genoa, Italy, Abstract A 58).
alone or in combination with other therapeutic drugs, colchicine may be
used to treat cancer (WO-09303729-A, published Mar. 4, 1993; J
03240726-A, published Oct. 28, 1991), alter neuromuscular function,
change blood pressure, increase sensitivity to compounds affecting
sympathetic neuron function, depress respiration, and relieve gout
(Physician's Desk Reference, Vol. 47, p. 1487, (1993)).
[0290] As is also disclosed in U.S. Pat. No. 6,723,858,
estradiol and estradiol metabolites such as 2-methoxyestradiol have
been reported to inhibit cell division (Seegers, J. C. et al. J.
Steroid Biochem. 32, 797-809 (1989); Lottering, M-L. et al. Cancer Res.
52, 5926-5923(1992); Spicer, L. J. and Hammond, J. M. Mol. and Cell.
Endo. 64, 119-126 (1989); Rao, P. N. and Engelberg, J. Exp. Cell Res.
48, 71-81 (1967)). However, the activity is variable and depends on a
number of in vitro conditions. For example, estradiol inhibits cell
division and tubulin polymerization in some in vitro settings (Spicer,
L. J. and Hammond, J. M. Mol. and Cell. Endo. 64, 119-126 (1989);
Ravindra, R., J. Indian Sci. 64 (c) (1983)), but not in others
(Lottering, M-L. et al. Cancer Res. 52, 5926-5923 (1992); Ravindra, R.,
J. Indian Sci. 64 (c) (1983)). Estradiol metabolites such as
2-methoxyestradiol will inhibit cell division in selected in vitro
settings depending on whether the cell culture additive phenol red is
present and to what extent cells have been exposed to estrogen.
(Seegers, J. C. et al. Joint NCI-IST Symposium. Biology and Therapy of
Breast Cancer. Sep. 25, Sep. 27, 1989, Genoa, Italy, Abstract A 58).
[0291] In one preferred embodiment, the modifiable anti-mitotic
agent is an anti-microtubule agent. In one aspect of this embodiment,
and referring to U.S. Pat. No. 6,689,803 at columns 5-6 thereof (the
entire disclosure of which patent is hereby incorporated by reference
into this specification), representative anti-microtubule agents
include, e.g., " . . . taxanes (e.g., paclitaxel and docetaxel),
campothecin, eleutherobin, sarcodictyins, epothilones A and B,
discodermolide, deuterium oxide (D.sub.2O), hexylene glycol
(2-methyl-2,4-pentanediol), tubercidin (7-deazaadenosine), LY290181
(2-amino-4-(3-pyridyl)-4H-naphtho(1,2-b)pyran-3-cardonitrile), aluminum
fluoride, ethylene glycol bis-(succinimidylsuccinate), glycine ethyl
ester, nocodazole, cytochalasin B, colchicine, colcemid,
podophyllotoxin, benomyl, oryzalin, majusculamide C, demecolcine,
methyl-2-benzimidazolecarbamate (MBC), LY195448, subtilisin, 1069C85,
steganacin, combretastatin, curacin, estradiol, 2-methoxyestradiol,
flavanol, rotenone, griseofulvin, vinca alkaloids, including
vinblastine and vincristine, maytansinoids and ansamitocins, rhizoxin,
phomopsin A, ustiloxins, dolastatin 10, dolastatin 15, halichondrins
and halistatins, spongistatins, cryptophycins, rhazinilam, betaine,
taurine, isethionate, HO-221, adociasulfate-2, estramustine, monoclonal
anti-idiotypic antibodies, microtubule assembly promoting protein
(taxol-like protein, TALP), cell swelling induced by hypotonic (190
mmol/L) conditions, insulin (100 nmol/L) or glutamine (10 mmol/L),
dynein binding, gibberelin, XCHO1 (kinesin-like protein),
lysophosphatidic acid, lithium ion, plant cell wall components (e.g.,
poly-L-lysine and extensin), glycerol buffers, Triton X-100 microtubule
stabilizing buffer, microtubule associated proteins (e.g., MAP2, MAP4,
tau, big tau, ensconsin, elongation factor-1-alpha (EF-1.alpha.) and
E-MAP-115), cellular entities (e.g., histone H1, myelin basic protein
and kinetochores), endogenous microtubular structures (e.g., axonemal
structures, plugs and GTP caps), stable tubule only polypeptide (e.g.,
STOP145 and STOP220) and tension from mitotic forces, as well as any
analogues and derivatives of any of the above. Within other
embodiments, the anti-microtubule agent is formulated to further
comprise a polymer."
[0292] The term "anti-microtubule," as used in this
specification (and in the specification of U.S. Pat. No. 6,689,803),
refers to any " . . . protein, peptide, chemical, or other molecule
which impairs the function of microtubules, for example, through the
prevention or stabilization of polymerization. A wide variety of
methods may be utilized to determine the anti-microtubule activity of a
particular compound, including for example, assays described by Smith
et al. (Cancer Lett 79(2):213-219, 1994) and Mooberry et al., (Cancer
Lett. 96(2):261-266, 1995);" see, e.g., lines 13-21 of column 14 of
U.S. Pat. No. 6,689,803. One preferred method, utilizing the
anti-mitotic factor, is described in this specification.
[0293] An extensive listing of anti-microtubule agents is
provided in columns 14, 15, 16, and 17 of U.S. Pat. No. 6,689,803; and
one or more of them may be modified them in accordance with the process
of this invention to make them magnetic. These anti-microtubule agents
include " . . . taxanes (e.g., paclitaxel (discussed in more detail
below) and docetaxel) (Schiff et al., Nature 277: 665-667, 1979; Long
and Fairchild, Cancer Research 54: 4355-4361, 1994; Ringel and Horwitz,
J. Natl. Cancer Inst. 83(4): 288-291, 1991; Pazdur et al., Cancer
Treat. Rev. 19(4): 351-386, 1993), campothecin, eleutherobin (e.g.,
U.S. Pat. No. 5,473,057), sarcodictyins (including sarcodictyin A),
epothilones A and B (Bollag et al., Cancer Research 55: 2325-2333,
1995), discodermolide (ter Haar et al., Biochemistry 35: 243-250,
1996), deuterium oxide (D2O) (James and Lefebvre, Genetics 130(2):
305-314, 1992; Sollott et al., J. Clin. Invest. 95:1869-1876, 1995),
hexylene glycol (2-methyl-2,4-pentanediol) (Oka et al., Cell Struct.
Funct. 16(2): 125-134, 1991), tubercidin (7-deazaadenosine) (Mooberry
et al., Cancer Lett. 96(2): 261-266, 1995), LY290181
(2-amino-4-(3-pyridyl)-4H-naphtho(1,2-b)pyran-3-cardonitrile) (Panda et
al., J. Biol. Chem. 272(12): 7681-7687, 1997; Wood et al., Mol.
Pharmacol. 52(3): 437-444, 1997), aluminum fluoride (Song et al., J.
Cell. Sci. Suppl. 14: 147-150, 1991), ethylene glycol
bis-(succinimidylsuccinate) (Caplow and Shanks, J. Biol. Chem. 265(15):
8935-8941, 1990), glycine ethyl ester (Mejillano et al., Biochemistry
31(13): 3478-3483, 1992), nocodazole (Ding et al., J. Exp. Med. 171(3):
715-727, 1990; Dotti et al., J. Cell Sci. Suppl. 15: 75-84, 1991; Oka
et al., Cell Struct. Funct. 16(2): 125-134, 1991; Weimer et al., J.
Cell. Biol. 136(1), 71-80, 1997), cytochalasin B (Illinger et al.,
Biol. Cell 73(2-3): 131-138, 1991), colchicine and CI 980 (Allen et
al., Am. J. Physiol. 261(4 Pt. 1): L315-L321, 1991; Ding et al., J.
Exp. Med. 171(3): 715-727, 1990; Gonzalez et al., Exp. Cell. Res.
192(1): 10-15, 1991; Stargell et al., Mol. Cell. Biol. 12(4):
1443-1450, 1992; Garcia et al., Antican. Drugs 6(4): 533-544, 1995),
colcemid (Barlow et al., Cell. Motil. Cytoskeleton 19(1): 9-17, 1991;
Meschini et al., J. Microsc. 176(Pt. 3): 204-210, 1994; Oka et al.,
Cell Struct. Funct. 16(2): 125-134, 1991), podophyllotoxin (Ding et
al., J. Exp. Med. 171(3): 715-727, 1990), benomyl (Hardwick et al., J.
Cell. Biol. 131(3): 709-720, 1995; Shero et al., Genes Dev. 5(4):
549-560, 1991), oryzalin (Stargell et al., Mol. Cell. Biol. 12(4):
1443-1450, 1992), majusculamide C (Moore, J. Ind. Microbiol. 16(2):
134-143, 1996), demecolcine (Van Dolah and Ramsdell, J. Cell. Physiol.
166(1): 49-56, 1996; Wiemer et al., J. Cell. Biol. 136(1): 71-80,
1997), methyl-2-benzimidazolecarbamate (MBC) (Brown et al., J. Cell.
Biol. 123(2): 387-403, 1993), LY195448 (Barlow & Cabral, Cell
Motil. Cytoskel. 19: 9-17, 1991), subtilisin (Saoudi et al., J. Cell
Sci. 108: 357-367, 1995), 1069C85 (Raynaud et al., Cancer Chemother.
Pharmacol. 35: 169-173, 1994), steganacin (Hamel, Med. Res. Rev. 16(2):
207-231, 1996), combretastatins (Hamel, Med. Res. Rev. 16(2): 207-231,
1996), curacins (Hamel, Med. Res. Rev. 16(2): 207-231, 1996), estradiol
(Aizu-Yokata et al., Carcinogen. 15(9): 1875-1879, 1994),
2-methoxyestradiol (Hamel, Med. Res. Rev. 16(2): 207-231, 1996),
flavanols (Hamel, Med. Res. Rev. 16(2): 207-231, 1996), rotenone
(Hamel, Med. Res. Rev. 16(2): 207-231, 1996), griseofulvin (Hamel, Med.
Res. Rev. 16(2): 207-231; 1996), vinca alkaloids, including vinblastine
and vincristine (Ding et al., J. Exp. Med. 171(3): 715-727, 1990; Dirk
et al., Neurochem. Res. 15(11): 1135-1139, 1990; Hamel, Med. Res. Rev.
16(2): 207-231, 1996; Illinger et al., Biol. Cell 73(2-3): 131-138,
1991; Wiemer et al., J. Cell. Biol. 136(1): 71-80, 1997), maytansinoids
and ansamitocins (Hamel, Med. Res. Rev. 16(2): 207-231, 1996), rhizoxin
(Hamel, Med. Res. Rev. 16(2): 207-231, 1996), phomopsin A (Hamel, Med.
Res. Rev. 16(2): 207-231, 1996), ustiloxins (Hamel, Med. Res. Rev.
16(2): 207-231, 1996), dolastatin 10 (Hamel, Med Res. Rev. 16(2):
207-231, 1996), dolastatin 15 (Hamel, Med. Res. Rev. 16(2): 207-231,
1996), halichondrins and halistatins (Hamel, Med. Res. Rev. 16(2):
207-231, 1996), spongistatins (Hamel, Med. Res. Rev. 16(2): 207-231,
1996), cryptophycins (Hamel, Med. Res. Rev. 16(2): 207-231, 1996),
rhazinilam (Hamel, Med. Res. Rev. 16(2): 207-231, 1996), betaine
(Hashimoto et al., Zool. Sci. 1: 195-204, 1984), taurine (Hashimoto et
al., Zool. Sci. 1: 195-204, 1984), isethionate (Hashimoto et al., Zool.
Sci. 1: 195-204, 1984), HO-221 (Ando et al., Cancer Chemother.
Pharmacol. 37: 63-69, 1995), adociasulfate-2 (Sakowicz et al., Science
280: 292-295, 1998), estramustine (Panda et al., Proc. Natl. Acad. Sci.
USA 94: 10560-10564, 1997), monoclonal anti-idiotypic antibodies (Leu
et al., Proc. Natl. Acad. Sci. USA 91(22): 10690-10694, 1994),
microtubule assembly promoting protein (taxol-like protein, TALP)
(Hwang et al., Biochem. Biophys. Res. Commun. 208(3): 1174-1180, 1995),
cell swelling induced by hypotonic (190 mosmol/L) conditions, insulin
(100 nmol/L) or glutamine (10 mmol/L) (Haussinger et al., Biochem.
Cell. Biol. 72(1-2): 12-19, 1994), dynein binding (Ohba et al.,
Biochim. Biophys. Acta 1158(3): 323-332, 1993), gibberelin (Mita and
Shibaoka, Protoplasma 119(1/2): 100-109, 1984), XCHO1 kinesin-like
protein) (Yonetani et al., Mol. Biol. Cell 7(suppl): 211A, 1996),
lysophosphatidic acid (Cook et al., Mol. Biol. Cell 6(suppl): 260A,
1995), lithium ion (Bhattacharyya and Wolff, Biochem. Biophys. Res.
Commun. 73(2): 383-390, 1976), plant cell wall components (e.g.,
poly-L-lysine and extensin) (Akashi et al., Planta 182(3): 363-369,
1990), glycerol buffers (Schilstra et al., Biochem. J. 277(Pt. 3):
839-847, 1991; Farrell and Keates, Biochem. Cell. Biol. 68(11):
1256-1261, 1990; Lopez et al., J. Cell. Biochem. 43(3): 281-291, 1990),
Triton X-100 microtubule stabilizing buffer (Brown et al., J. Cell Sci.
104(Pt. 2): 339-352, 1993; Safiejko-Mroczka and Bell, J. Histochem.
Cytochem. 44(6): 641-656, 1996), microtubule associated proteins (e.g.,
MAP2, MAP4, tau, big tau, ensconsin, elongation factor-1-alpha
EF-1.alpha.) and E-MAP-115) (Burgess et al., Cell Motil. Cytoskeleton
20(4): 289-300, 1991; Saoudi et al., J. Cell. Sci. 108(Pt. 1): 357-367,
1995; Bulinski and Bossler, J. Cell. Sci. 107(Pt. 10): 2839-2849, 1994;
Ookata et al., J. Cell Biol. 128(5): 849-862, 1995; Boyne et al., J.
Comp. Neurol. 358(2): 279-293, 1995; Ferreira and Caceres, J. Neurosci.
11(2): 392400, 1991; Thurston et al., Chromosoma 105(1): 20-30, 1996;
Wang et al., Brain Res. Mol. Brain Res. 38(2): 200-208, 1996; Moore and
Cyr, Mol. Biol. Cell 7(suppl): 221-A, 1996; Masson and Kreis, J. Cell
Biol. 123(2), 357-371, 1993), cellular entities (e.g. histone H1,
myelin basic protein and kinetochores) (Saoudi et al., J. Cell. Sci.
108(Pt. 1): 357-367, 1995; Simerly et al., J. Cell Biol. 111(4):
1491-1504, 1990), endogenous microtubular structures (e.g., axonemal
structures, plugs and GTP caps) (Dye et al., Cell Motil. Cytoskeleton
21(3): 171-186, 1992; Azhar and Murphy, Cell Motil. Cytoskeleton 15(3):
156-161, 1990; Walker et al., J. Cell Biol. 114(1): 73-81, 1991;
Drechsel and Kirschner, Curr. Biol. 4(12): 1053-1061, 1994), stable
tubule only polypeptide (e.g., STOP145 and STOP220) (Pirollet et al.,
Biochim. Biophys. Acta 1160(1): 113-119, 1992; Pirollet et al.,
Biochemistry 31(37): 8849-8855, 1992; Bosc et al., Proc. Natl. Acad.
Sci. USA 93(5): 2125-2130, 1996; Margolis et al., EMBO J. 9(12):
4095-4102, 1990) and tension from mitotic forces (Nicklas and Ward, J.
Cell Biol. 126(5): 1241-1253, 1994), as well as any analogues and
derivatives of any of the above. Such compounds can act by either
depolymerizing microtubules (e.g., colchicine and vinblastine), or by
stabilizing microtubule formation (e.g., paclitaxel)."
[0294] U.S. Pat. No. 6,689,803 also discloses (at columns 16
and 17 that, "Within one preferred embodiment of the invention, the
anti-mitotic compound is paclitaxel, a compound which disrupts
microtubule formation by binding to tubulin to form abnormal mitotic
spindles. Briefly, paclitaxel is a highly derivatized diterpenoid (Wani
et al., J. Am. Chem. Soc. 93:2325, 1971) which has been obtained from
the harvested and dried bark of Taxus brevifolia (Pacific Yew) and
Taxomyces Andreanae and Endophytic Fungus of the Pacific Yew (Stierle
et al., Science 60:214-216,-1993). "Paclitaxel" (which should be
understood herein to include prodrugs, analogues and derivatives such
as, for example, TAXOL.RTM., TAXOTERE.RTM., Docetaxel, 10-desacetyl
analogues of paclitaxel and 3'N-desbenzoyl-3'N-t-butoxy carbonyl
analogues of paclitaxel) may be readily prepared utilizing techniques
known to those skilled in the art (see e.g., Schiff et al., Nature
277:665-667, 1979; Long and Fairchild, Cancer Research 54:4355-4361,
1994; Ringel and Horwitz, J. Natl Cancer Inst. 83(4):288-291, 1991;
Pazdur et al., Cancer Treat. Rev. 19(4):351-386, 1993; WO9407882;
WO9407881; WO9407880; WO9407876; WO9323555; WO9310076; WO94/00156;
WO9324476; EP590267; WO9420089; U.S. Pat. Nos. 5,294,637; 5,283,253;
5,279,949; 5,274,137; 5,202,448; 5,200,534; 5,229,529; 5,254,580;
5,412,092; 5,395,850; 5,380,751; 5,350,866; 4,857,653; 5,272,171;
5,411,984; 5,248,796; 5,248,796; 5,422,364; 5,300,638; 5,294,637;
5,362,831; 5,440,056; 4,814,470; 5,278,324; 5,352,805; 5,411,984;
5,059,699; 4,942,184; Tetrahedron Letters 35(52):9709-9712, 1994; J.
Med. Chem. 35:4230-4237, 1992; J. Med. Chem. 34:992-998, 1991; J.
Natural Prod. 57(10):1404-1410, 1994; J. Natural Prod.
57(11):1580-1583, 1994; J. Am. Chem. Soc. 110:6558-6560, 1988), or
obtained from a variety of commercial sources, including for example,
Sigma Chemical Co., St. Louis, Mo. (T7402--from Taxus brevifolia)."
[0295] As is also disclosed in U.S. Pat. No. 6,689,893,
"Representative examples of such paclitaxel derivatives or analogues
include 7-deoxy-docetaxol, 7,8-cyclopropataxanes, N-substituted
2-azetidones, 6,7-epoxy paclitaxels, 6,7-modified paclitaxels,
10-desacetoxytaxol, 10-deacetyltaxol (from 10-deacetylbaccatin III),
phosphonooxy and carbonate derivatives of taxol, taxol 2',7-di(sodium
1,2-benzenedicarboxylate,
10-desacetoxy-11,12-dihydrotaxol-10,12(18)-diene derivatives,
10-desacetoxytaxol, Protaxol(2'- and/or 7-O-ester derivatives),
(2'-and/or 7-O-carbonate derivatives), asymmetric synthesis of taxol
side chain, fluoro taxols, 9-deoxotaxane, (13-acetyl-9-deoxobaccatine
III, 9-deoxotaxol, 7-deoxy-9-deoxotaxol,
10-desacetoxy-7-deoxy-9-deoxotaxol, Derivatives containing hydrogen or
acetyl group and a hydroxy and tert-butoxycarbonylamino, sulfonated
2'-acryloyltaxol and sulfonated 2'-O-acyl acid taxol derivatives,
succinyltaxol, 2'-.gamma.-aminobutyryltaxol formate, 2'-acetyl taxol,
7-acetyl taxol, 7-glycine carbamate taxol, 2'-OH-7-PEG(5000)carbamate
taxol, 2'-benzoyl and 2',7-dibenzoyl taxol derivatives, other prodrugs
(2'-acetyl taxol; 2',7-diacetyltaxol; 2'succinyltaxol;
2'-(beta-alanyl)-taxol); 2'gamma-aminobutyryltaxol formate; ethylene
glycol derivatives of 2'-succinyltaxol; 2'-glutaryltaxol;
2'-(N,N-dimethylglycyl)taxol; 2'-(2-(N,N-dimethylamino)propionyl)taxol;
2'orthocarboxybenzoyl taxol; 2'aliphatic carboxylic acid derivatives of
taxol, Prodrugs {2'(N,N-diethylaminopropionyl)taxol,
2'(N,N-dimethylglycyl)taxol, 7(N,N-dimethylglycyl)taxol,
2',7-di-(N,N-dimethylglycyl)taxol, 7(N,N-diethylaminopropionyl)taxol,
2',7-di(N,N-diethylaminopropionyl)taxol, 2'-(L-glycyl)taxol,
7-(L-glycyl)taxol, 2',7-di(L-glycyl)taxol, 2'-(L-alanyl)taxol,
7-(L-alanyl)taxol, 2',7-di(L-alanyl)taxol, 2'-(L-leucyl)taxol,
7-(L-leucyl)taxol, 2',7-di(L-leucyl)taxol, 2'-(L-isoleucyl)taxol,
7-(L-isoleucyl)taxol, 2',7-di(L-isoleucyl)taxol, 2'-(L-valyl)taxol,
7-(L-valyl)taxol, 2',7-di(L-valyl)taxol, 2'-(L-phenylalanyl)taxol,
7-(L-phenylalanyl)taxol, 2',7-di(L-phenylalanyl)taxol,
2'-(L-prolyl)taxol, 7-(L-prolyl)taxol, 2',7-di(L-prolyl)taxol,
2'-(L-lysyl)taxol, 7-(L-lysyl)taxol, 2',7-di(L-lysyl)taxol,
2'-(L-glutamyl)taxol, 7-(L-glutamyl)taxol, 2',7-di(L-glutamyl)taxol,
2'-(L-arginyl)taxol, 7-(L-arginyl)taxol, 2',7-di(L-arginyl)taxol},
Taxol analogs with modified phenylisoserine side chains, taxotere,
(N-debenzoyl-N-tert-(butoxycaronyl)-10-deacetyltaxol, and taxanes
(e.g., baccatin III, cephalomannine, 10-deacetylbaccatin III,
brevifoliol, yunantaxusin and taxusin)."
[0296] By way of yet further illustration, one may use one or
more of the anti-mitotic agents disclosed in U.S. Pat. No. 6,673,937
(syntheses and methods of use of new antimitotic agents), U.S. Pat. No.
6,624,317 (taxoid conjugates as antimitotoic and antitumor agents),
U.S. Pat. No. 6,593,334 (camptothecin-taxoid conjugates as antimitotic
and antitumor agents), U.S. Pat. No. 6,593,321 (2-alkoxyestradiiol
analogs with antiproliferative and antimitotic activity), U.S. Pat. No.
6,569,870 (fluorinated quinolones as antimitotic and antitumor agent),
U.S. Pat. No. 6,528,489 (mycotoxin derivatives as antimitotic agents),
U.S. Pat. No. 6,392,055 (synthesis and biological evaluation of analogs
of the antimitotic marine natural product curacin A), U.S. Pat. No.
6,127,377 (vinka alkaloid antimitotic halogenated derivatives), U.S.
Pat. No. 5,695,950 (method of screening for antimitotic compounds using
the cdc25 tyrosine phosphatase), U.S. Pat. No. 5,620,985 (antimitotic
binary alkaloid derivatives from catharanthus roseus), U.S. Pat. No.
5,294,538 (method of screening for antimitotic compounds using the CDC
tyrosine phosphatase), and the like. The entire disclosure of each of
these United States patents is hereby incorporated by reference into
this specification.
[0297] As will be apparent, one or more of the aforementioned
anti-mitotic and/or anti-microtubule agents may be modified to make
them magnetic in accordance with this invention.
Synergistic Combinations of Magnetic Anti-Mitotic Agents
[0298] In one embodiment of this invention, discussed elsewhere
in this specification, a synergistic combination of the magnetic
anti-mititoic compound of this invention and paclitaxel is described.
In the embodiment of the invention described in this section of the
specification, a synergitic combination of two or more anti-mititoic
compounds is described.
[0299] In one embodiment, the first anti-mitotic compound is
preferably a magnetic taxane such as, e.g., magnetic paclitaxel and/or
magnetic docetaxel. In this embodiment, the second anti-mitotic
compound may be magnetic discdermolide, and/or magnetic epothilone A,
and/or magnetic epothilone B, and/or mixtures thereof. Other suitable
combinations of magnetic anti-mitotic agents will be apparent.
Properties of the Preferred Anti-Mitotic Compounds
[0300] In one preferred embodiment, the compound of this
invention has a mitotic index factor of at least about 10 percent and,
more preferably, at least about 20 percent. In one aspect of this
embodiment, the mitotic index factor is at least about 30 percent. In
another embodiment, the mitotic index factor is at least about 50
percent.
[0301] In another embodiment of the invention, the compound of
this invention has a mitotic index factor of less than about 5 percent.
[0302] As is known to those skilled in the art, the mitotic
index is a measure of the extent of mitosis. Reference may be had,
e.g., to U.S. Pat. No. 5,262,409 (binary tumor therapy), U.S. Pat. No.
5,443,962 (methods of identifying inhibitors of cdc25 phosphatase),
U.S. Pat. No. 5,744,300 (methods and reagents for the identification
and regulation of senescence-related genes), U.S. Pat. Nos. 6,613,318,
6,251,585 (assay and reagents for identifying anti-proliferative
agents), 6,252,058 (sequences for targeting metastatic cells),
6,387,642 (method for identifying a reagent that modulates Myt1
activity), U.S. Pat. No. 6,413,735 (method of screening for a modulator
of angiogenesis), U.S. Pat. No. 6,531,479 (anti-cancer compounds), U.S.
Pat. No. 6,599,694 (method of characterizing potential therapeutics by
determining cell-cell interactions), U.S. Pat. No. 6,620,403 (in vivo
chemosensitivity screen for human tumors), U.S. Pat. No. 6,699,854
(anti-cancer compounds), U.S. Pat. No. 6,743,576 (database system for
predictive cellular bioinformatics), and the like. The entire
disclosure of each of these United States patents is hereby
incorporated by reference into this specification.
[0303] Reference may also be had, e.g., to U.S. Pat. No.
5,262,409, which discloses that: "Determination of mitotic index: For
testing mitotic blockage with nocodazole and taxol, cells were grown a
minimum of 16 hours on polylysinecoated glass coverslips before drug
treatment. Cells were fixed at intervals, stained with antibodies to
detect lamin B, and counterstained with propidium iodide to assay
chromosome condensation. To test cell cycle blocks in interphase, cells
were synchronized in mitosis by addition of nocodazole (Sigma Chemical
Co.) to a final concentration of 0.05 .mu.g/ml from a 1 mg/ml stock in
dimethylsulfoxide. After 12 hours arrest, the mitotic subpopulation was
isolated by shakeoff from the culture plate. After applying cell cycle
blocking drugs and/or 2-AP, cells were fixed at intervals, prepared for
indirect immunofluorescence with anti-tubulin antibodies, and
counterstained with propidium iodide. All data timepoints represent
averages of three counts of greater than 150 cells each. Standard
deviation was never more than 1.5% on the ordinate scale."
[0304] Reference may be had, e.g., to U.S. Pat. No. 6,413,735
which discloses that: "The mitotic index is determined according to
procedures standard in the art. Keram et al., Cancer Genet. Cytogenet.
55:235 (1991). Harvested cells are fixed in methanol:acetic acid (3:1,
v:v), counted, and resuspended at 106 cells/ml in fixative. Ten
microliters of this suspension is placed on a slide, dried, and treated
with Giemsa stain. The cells in metaphase are counted under a light
microscope, and the mitotic index is calculated by dividing the number
of metaphase cells by the total number of cells on the slide.
Statistical analysis of comparisons of mitotic indices is performed
using the 2-sided paired t-test."
[0305] By means of yet further illustration, one may measure
the mitotic index by means of the procedures described in, e.g.,
articles by Keila Torres et al. ("Mechanisms of Taxol-Induced Cell
Death are Concentration Dependent," Cancer Research 58, 3620-3626, Aug.
15, 1998), and Jie-Gung Chen et al. ("Differential Mitosis Responses to
Microtubule-stabilizing and destablilizng Drugs," Cancer Research 62,
1935-1938, Apr. 1, 2002).
[0306] The mitotic index is preferably measured by using the
well-known HeLa cell lines. As is known to those skilled in the art,
HeLa cells are cells that have been derived from a human carcinoma of
the cervix from a patient named Henrietta Lack; the cells have been
maintained in tissued culture since 1953.
[0307] Hela cells are described, e.g., in U.S. Pat. No.
5,811,282 (cell lines useful for detection of human immunodeficiency
virus), U.S. Pat. No. 5,376,525 (method for the detection of
mycoplasma), U.S. Pat. Nos. 6,143,512, 6,326,196, 6,365,394 (cell lines
and constructs useful in production of E-1 deleted adenoviruses), U.S.
Pat. No. 6,440,658 (assay method for determining effect on aenovirus
infection of Hela cells), U.S. Pat. No. 6,461,809 (method of improving
inflectivity of cells for viruses), U.S. Pat. Nos. 6,596,535,
6,605,426, 6,610,493 (screening compounds for the ability to alter the
production of amyloid-beta-peptide), U.S. Pat. No. 6,699,851 (cytotoxic
compounds and their use), and the like; the entire disclosure of each
of these United States patents is hereby incorporated by reference into
this specification. By way of illustration, U.S. Pat. No. 6,440,658
discloses that, for the experiments described in such patent, "The HeLa
cell line was obtained from the American Type Culture Collection,
Manassas Va."
[0308] In one preferred embodiment, the mitotic index of a
"control cell line" (i.e., one that omits that drug to be tested) and
of a cell line that includes 50 nanomoles of such drug per liter of the
cell line are determined and compared. The "mitotic index factor" is
equal to (Mt-Mc/Mc).times.100, wherein Mc is the mitotic index of the
"control cell line," and Mt is the mitotic index of the cell line that
includes the drug to be tested.
[0309] The compound of this invention preferably has a
molecular weight of at least about 150 grams per mole. In one
embodiment, the molecular weight of such compound is at least 300 grams
per mole. In another embodiment, the molecular weight of such compound
is 400 grams per mole. In yet another embodiment, the molecular weight
of such compound is at least about 550 grams per mole. In yet another
embodiment, the molecular weight of such compound is at least about
1,000 grams per mole. In yet another embodiment, the molecular weight
of such compound is at least 1,200 grams per mole.
[0310] The compound of this invention preferably has a positive
magnetic susceptibility of at least 1,000.times.10.sup.-6
centimeter-gram-seconds (cgs). As is known to those skilled in the art,
magnetic susceptibility is the ratio of the magnetization of a material
to the magnetic filed strength. Reference may be had, e.g., to U.S.
Pat. No. 3,614,618 (magnetic susceptibility tester), U.S. Pat. No.
3,644,823 (nulling coil apparatus for magnetic susceptibility logging),
U.S. Pat. No. 3,657,636 (thermally stable coil assembly for magnetic
susceptibility logging), U.S. Pat. No. 3,665,297 (apparatus for
determining magnetic susceptibility in a controlled chemical and
thermal environment), U.S. Pat. No. 3,758,847 (method and system with
voltage cancellation for measuring the magnetic susceptibility of a
subsurface earth formation), U.S. Pat. No. 3,758,848 (magnetic
susceptibility well logging system), U.S. Pat. No. 3,879,658 (apparatus
for measuring magnetic susceptibility), U.S. Pat. No. 3,890,563
(magnetic susceptibility logging apparatus for distinguishing
ferromagnetic materials), U.S. Pat. No. 3,980,076 (method for measuring
externally of the human body magnetic susceptibility changes), U.S.
Pat. No. 4,079,730 (apparatus for measuring externally of the human
body magnetic susceptibility changes), U.S. Pat. No. 4,277,750
(induction probe for the measurement of magnetic susceptibility), U.S.
Pat. No. 4,359,399 (taggands with induced magnetic susceptibility),
U.S. Pat. No. 4,507,613 (method for identifying non-magnetic minerals
in earth formations utilizing magnetic susceptibility measurements),
U.S. Pat. No. 4,662,359 (use of magnetic susceptibility probes in the
treatment of cancer), U.S. Pat. No. 4,701,712 (thermoregulated magnetic
susceptibility sensor assembly), U.S. Pat. No. 5,233,992 (MRI method
for high liver iron measurement using magnetic susceptibility induced
field distortions), U.S. Pat. No. 6,208,884 (noninvasive room
temperature instrument to measure magnetic susceptibility variations in
body tissue), U.S. Pat. No. 6,321,105 (contrast agents with high
magnetic susceptibility), U.S. Pat. No. 6,477,398 (resonant magnetic
susceptibility imaging), and the like. The entire disclosure of each of
these United States patent applications is hereby incorporated by
reference into this specification.
[0311] In one embodiment, the compound of this invention has a
positive magnetic susceptibility of at least 5,000.times.10.sup.-6 cgs.
In another embodiment, such compound has a positive magnetic
susceptibility of at least 10,000.times.10.sup.-6 cgs.
[0312] The compound of this invention is preferably comprised
of at least 7 carbon atoms and, more preferably, at least about 10
carbon atoms. In another embodiment, such compound is comprised of at
least 13 carbon atoms and at least one aromatic ring; in one aspect of
this embodiment, the compound has at least two aromatic rings. In
another embodiment, such compound is comprised of at least 17 carbon
atoms.
[0313] In one embodiment, the compound of this invention is
comprised of at least one oxetane ring. As is disclosed, e.g., on page
863 of N. Iving Sax's "Hawley's Condensed Chemical Dictionary,"
Eleventh Edition (Van Nostrand Reinhold Company, New York, N.Y., 1987),
the oxetane group, also known as "trimethylene oxide), is identified by
chemical abstract number CAS: 503-30-0. The oxetane group present in
the preferred compound preferably is unsubstituted. In one embodiment,
however, one or more of the ring carbon atoms (either carbon number
one, or carbon number two, or carbon number 3), has one or more of its
hydrogen atoms substituted by a halogen group (such as chlorine), a
lower alkyl group of from 1 to 4 carbon atoms, a lower haloalkyl group
of from 1 to 4 carbon atoms, a cyanide group (CN), a hydroxyl group, a
carboxyl group, an amino group (which can be primary, secondary, or
teriarary and may also contain from 0 to 6 carbon atoms), a substituted
hydroxyl group (such as, e.g., an ether group containing from 1 to 6
carbon atoms), and the like. In one aspect of this embodiment, the
substituted oxetane group is 3,3-bis (chlormethyl) oxetane.
[0314] In one embodiment, the compound of this invention is
comprised of from about 1 to 10 groups of the formula --OB, in which B
is selected from the group consisting of hydrogen, alkyl of from about
1 to about 5 carbon atoms, and a moiety of the formula R--(C=0)--O--,
wherein R is selected from the group consisting of hydrogen and alkyl
of from about 1 to about 6 carbon atoms, and the carbon is bonded to
the R moiety, to the double-bonded oxygen, and to the single bonded
oxygen, thereby forming what is commonly known as an acetyl group. This
acetyl group preferably is linked to a ring structure that is
unsaturated and preferably contains from about 6 to about 10 carbon
atoms.
[0315] In one embodiment, the compound is comprised of two
unsaturated ring structures linked by an amide structure, which
typically has an acyl group, --CONR.sub.1 --, wherein R.sub.1 is
selected from the group consisting of hydrogen lower alkyl of from 1 to
about 6 carbon atoms. In one preferred embodiment, the N group is
bonded to both to the R.sub.1 group and also to radical that contains
at least about 20 carbon atoms and at least about 10 oxygen atoms.
[0316] In one embodiment, the compound of this invention
contains at least one saturated ring comprising from about 6 to about
10 carbon atoms. By way of illustration, the saturated ring structures
may be one or more cyclohexane rings, cyclopheptane rings, cyclooctane
rings, cyclononane rings, and/or cyclodecane rings. In one preferred
aspect of this embodiment, at least one saturated ring in the compound
is bonded to at least one quinine group. Referring to page 990 of the
"Hawley's Condensed Chemical Dictionary" described elsewhere in this
specification, quinine is 1,4-benzoquinone and is identified as "CAS:
106-51-4."
[0317] In one embodiment, the compound of this invention may
comprise a ring structure with one double bond or two double bonds (as
opposed to the three double bonds in the aromatic structures). These
ring structures may be a partially unsaturated material selected from
the group consisting of partially unsaturated cyclohexane, partially
unsaturated cyclopheptane, partially unsaturated cyclooctane, partially
unsaturated cyclononane, partially unsaturated cyclodecane, and
mixtures thereof.
[0318] The compound of this invention is also preferably
comprised of at least one inorganic atom with a positive magnetic
susceptibility of at least 200.times.10.sup.-6 cgs. Thus, and referring
to the "CRC Handbook of Chemistry and Physics," 63.sup.rd Edition (CRC
Press, Inc., Boca Raton, Fla., 1982-83), the magnetic susceptibility of
elements are described at pages E-118 to E-123. Suitable inorganic
(i.e., non-carbon containing) elements with a positive magnetic
susceptibility greater than about 200.times.10.sup.-6 cgs include,
e.g., cerium (+5,160.times.10.sup.-6 cgs), cobalt
(+11,000.times.10.sup.-6 cgs), dysprosium (+89,600.times.10.sup.-6
cgs), europium (+34,000.times.10.sup.-6 cgs), gadolinium
(+755,000.times.10.sup.-6 cgs), iron (+13,600.times.10.sup.-6 cgs),
manganese (+529.times.10.sup.-6 cgs), palladium (+567.4.times.10.sup.-6
cgs), plutonium (+610.times.10.sup.-6 cgs), praseodymium
(+5010.times.10.sup.-6 cgs), samarium (+2230.times.10.sup.-6 cgs),
technetium (+250.times.10.sup.-6 cgs), thulium (+51,444.times.10.sup.-6
cgs), and the like. In one embodiment, the positive magnetic
susceptibility of such element is preferably greater than about
+500.times.10.sup.-6 cgs and, even more preferably, greater than about
+1,000.times.10.sup.-6 cgs.
[0319] In one preferred compound, the inorganic atom is
radioactive. As is known to those skilled in the art, radioactivity is
a phenomenon characterized by spontaneous disintegration of atomic
nuclei with emission of corpuscular or electromagnetic radiation.
[0320] In another preferred embodiment, one or more inorganic
or organic atoms that do not have the specified degree of magnetic
susceptibility are radioactive. Thus, e.g., the radioactive atom may
be, e.g, radioactive carbon, radioactive hydrogen (tritium),
radioactive phosphorus, radioactive sulfur, radioactive potassium, or
any other of the atoms that exist is radioactive isotope form.
[0321] One preferred class of atoms is the class of radioactive
nuclides. As is known to those skilled in the art, radioactive nuclides
are atoms disintegrate by emission of corpuscular or electromagnetic
radiations. The rays most commonly emitted are alpha or beta gamma
rays. See, e.g., page F-109 of the aforementioned "CRC Handbook of
Chemistry and Physics."
[0322] Radioactive nuclides are well known and are described,
e.g., in U.S. Pat. No. 4,355,179 (radioactive nuclide labeled
propiophenone compounds), U.S. Pat. No. 4,625,118 (device for the
elution and metering of a radioactive nuclide), U.S. Pat. No. 5,672,876
(method and apparatus for measuring distribution of radioactive nuclide
in a subject), and U.S. Pat. No. 6,607,710 (bisphosphonic acid
derivative and compound thereof labeled with radioactive nuclide.). The
entire disclosure of each of these United States patents is hereby
incorporated by reference into this specification.
[0323] Referring again to the aforementioned "CRC Handbook of
Chemistry and Physics," and to pages and in particular to pages
B340-B378 thereof, it will be seen that the inorganic atom may be,
e.g., cobalt 53, cobalt 54, cobalt 55, cobalt 56, cobalt 57, cobalt 58,
cobalt 59, cobalt 60, cobalt 61, cobalt 62, cobalt 63, gadolinium 146,
iron 49, iron 51, iron 52, iron 53, iron 54, iron 57, iron 58, iron 59,
iron 60, iron 61, iron 62, manganese 50, praseodymium 135, samarium
156, and the like.
[0324] The compound of this invention preferably has a magnetic
moment of at least about 0.5 Bohr magnetrons per molecule and, more
preferably, at least about 1.0 Bohr magnetrons per molecule. In one
embodiment, the compound has a magnetic moment of at least about 2 Bohr
magnetrons per molecule.
[0325] As is known to those skilled in the art, a Bohr
magnetron is the amount he/4(pi)mc, wherein he is Plank's constant, e
and m are the charge and mass of the electron, c is the speed of light,
and pi is equal to about 3.14567. Reference may be had, e.g., to U.S.
Pat. Nos. 4,687,331, 4,832,877, 4,849,107, 5,040,373 ("(One Bohr
magnetron is equal to 9.273.times.10-24 Joules/Tesla"), U.S. Pat. Nos.
5,169,944, 5,323,227 (".mu.o is a constant known as the Bohr magnetron
at 9.274.times.10-21 erg/Gauss"), U.S. Pat. Nos. 5,352,979; 6,383,597;
6,725,668; 6,739,137 ("One Bohr magnetron .mu.B is equal to
9.273.times.10-24 Joules/Tesla"), and the like. The entire disclosure
of each of these United States patents is hereby incorporated by
reference into this specification.
[0326] In one preferred embodiment, the magnetic compound of
this invention is water soluble. As is known to those skilled in the
art, solubility of one liquid or solid in another is the mass of the
substance contained in a solution which is in equilibrium with an
excess of the substance. Under such conditions, the solution is said to
be saturated. Reference may be had, e.g., to page F-95 of the CRC
"Handbook of Chemistry and Physics," 53.sup.rd Edition (The Chemical
Rubber Company, CRC Press Division, 18901 Cranwood Parkway, Cleveland,
Ohio, 44128, 1972-1973).
[0327] As used in this specification, the term "water soluble"
refers to a solubility of at least 10 micrograms per milliliter and,
more preferably, at least 100 micrograms per milliliter; by way of
comparison, the solubility of paclitaxel in water is only about 0.4
micrograms per milliliter. One may determine water solubility by
conventional means. Thus, e.g., one may mix 0.5 milliliters of water
with the compound to be tested under ambient conditions, stir for 18
hours under ambient conditions, filter the slurry thus produced to
remove the non-solubulized portion of the fitrand, and calculae how
much of the filtrand was solubilized. From this, one can determine the
number of micrograms that went into solution.
[0328] In one embodiment, the magnetic compound of this
invention has a water solubility of at least 500 micrograms per
milliliter, and more preferably at least 1,000 micrograms per
milliliter. In yet another embodiment, the magnetic compound of this
invention has a water solubility of at least 2500 micrograms per
milliliter. In yet another embodiment, the magnetic compound of this
invention has a water solubility of at least 5,000 micrograms per
milliliter. In yet another embodiment, the magnetic compound of this
invention has a water solubility of at least 10,000 micrograms per
milliliter.
[0329] In another embodiment, the magnetic compound of this
invention has a water solubility of less than about 10 micrograms per
milliliter and, preferably, less than about 1.0 micrograms per
milliliter.
[0330] Without wishing to be bound to any particular theory,
applicants believe that the presence of a hydrophilic group in the
compound of their invention helps render such compound water-soluble.
Thus, e.g., it is believed that the siderophore group that is present
in their preferred compounds aids in creating such water-solubility. As
is known to those skilled in the art, a siderophe is one of a number of
low molecular weight, iron-containing, or iron binding organic
compounds or groups. Siderophores have a strong affinity for Fe.sup.3+
(which they chelate) and function in the solubilization and transport
of iron. Siderophores are classified as belonging to either the
phenol-catechol type (such as enterobactin and agrobactin), or the
hydroxyamic acid type (such as ferrichome and mycobactin). Reference
may be had, e.g., to page 442 of J. Stenesh's "Dictionary of
Biochemistry and Molecular Biology," Second Edition (John Wiley &
Sons, New York, N.Y., 1989).
[0331] In one preferred embodiment, the compound of this
invention is comprised of one or more siderophore groups bound to a
magnetic moiety (such as, e.g., an atom selected from the group
consisting of iron, cobalt, nickel, and mixtures thereof).
[0332] As will be apparent, the inclusion of other hydrophilic
groups into otherwise water-insoluble compounds is contemplated. Thus,
by way of illustration and not limitation, and in place of or in
addition to such siderophore group, one use hydrophilic groups such as
the siderophore group(s) described hereinabove, hydroxyl groups,
carboxyl groups, amino groups, organometallic ionic structures,
phosphate groups, and the like. In one preferred aspect of this
embodiment, the hydrophilic group utilized should preferably be
biologically inert.
[0333] In one embodiment, the magnetic compound of this
invention has an association rate with microtubules of at least
3,500,000/mole/second. The association rate may be determined in
accordance with the procedure described in an article by J. F. Diaz et
al., "Fast Kinetics of Taxol Binding to Microtubules," Journal of
Biological Chemistry, 278(10) 8407-8455. Reference also may be had,
e.g., to a paper by J. R. Strobe et al. appearing in the Journal of
Biological Chemistry, 275: 26265-26276 (2000). As is disclosed, e.g.,
in the Diaz et al. paper, "The kinetics of binding and dissociation of
Flutax-1 and Flutax-2 were measured by the change of fluorescence
intensity using an SS-51 stopped flow device (High-Tech Scientific, UK)
equipped with a fluorescence detection system, using an excitation
wavelength of 492 and a 530-nm cut-off filter in the emission pathway.
The fitting of the kinetic curves was done with a non-linear least
squares fitting program based upon the Marquardt algorithm . . . where
pseudo-firt order conditions were used . . . ."
[0334] In another embodiment of the invention, the magnetic
compound of this invention has a dissociation rate with microtubules,
as measured in accordance with the procedure described in such Diaz et
al. paper, of less than about 0.08/second, when measured at a
temperature of 37 degrees Celsius and under atmospheric conditions.
Thus, in this embodiment, the magnetic compound of this invention binds
more durably to microtubules than does paclitaxel, which has a
dissociation rate of at least 0.91/second.
[0335] In one embodiment, the dissociation rate of the magnetic
compound of this invention is less than 0.7/second and, more
preferably, less than 0.6/second.
[0336] In one embodiment of this invention, the anti-mitotic
compound of the invention has the specified degree of water-solubility
and of anti-mitotic activity but does not necessarily possess one or
more of the magnetic properties described hereinabove.
Other Magnetic Compounds
[0337] In another embodiment of this invention, other compounds
which are not necessarily anti-mitotic are made magnetic by a process
comparable to the process described in this specification for making
taxanes magnetic.
[0338] In this embodiment, it is preferred to make "magnetic
derivatives" of drugs and therapeutic agents. These derivative
compounds each preferably have a molecular weight of at least 150 grams
per mole, a positive magnetic susceptibility of at least
1,000.times.10.sup.-6 cgs, and a magnetic moment of at least 0.5 bohr
magnetrons, wherein said compound is comprised of at least 7 carbon
atoms and at least one inorganic atom with a positive magnetic
susceptibility of at least 200.times.10.sup.-6 cgs.
[0339] Some of the preferred "precursors" used to make these
"derivative compounds" are described in the remainder of this section
of the specification.
[0340] The precursor materials may be either proteinaceous or
non-proteinaceous drugs, as they terms are defined in U.S. Pat. No.
5,194,581, the entire disclosure of which is hereby incorporated by
reference into this specification. U.S. Pat. No. 5,194,581 discloses
"The drugs with which can be incorporated in the compositions of the
invention include non-proteinaceous as well as proteinaceous drugs. The
term "non-proteinaceous drugs" encompasses compounds which are
classically referred to as drugs such as, for example, mitomycin C,
daunorubicin, vinblastine, AZT, and hormones. Similar substances are
within the skill of the art. The proteinaceous drugs which can be
incorporated in the compositions of the invention include
immunomodulators and other biological response modifiers. The term
"biological response modifiers" is meant to encompass substances which
are involved in modifying the immune response in such manner as to
enhance the particular desired therapeutic effect, for example, the
destruction of the tumor cells. Examples of immune response modifiers
include such compounds as lymphokines. Examples of lymphokines include
tumor necrosis factor, the interleukins, lymphotoxin, macrophage
activating factor, migration inhibition factor, colony stimulating
factor and the interferons. Interferons which can be incorporated into
the compositions of the invention include alpha-interferon,
beta-interferon, and gamma-interferon and their subtypes. In addition,
peptide or polysaccharide fragments derived from these proteinaceous
drugs, or independently, can also be incorporated. Also, encompassed by
the term "biological response modifiers" are substances generally
referred to as vaccines wherein a foreign substance, usually a
pathogenic organism or some fraction thereof, is used to modify the
host immune response with respect to the pathogen to which the vaccine
relates. Those of skill in the art will know, or can readily ascertain,
other substances which can act as proteinaceous drugs."
[0341] The precursor may be a lectin, as is disclosed in U.S.
Pat. No. 5,176,907, the entire disclosure of which is hereby
incorporated by reference into this specification. This United States
patent discloses "Lectins are proteins, usually isolated from plant
material, which bind to specific sugar moieties. Many lectins are also
able to agglutinate cells and stimulate lymphocytes. Other therapeutic
agents which can be used therapeutically with the biodegradable
compositions of the invention are known, or can be easily ascertained,
by those of ordinary skill in the art."
[0342] The precursor material may be an amorphous water-soluble
pharmaceutical agent, as is disclosed in U.S. Pat. No. 6,117,455, the
entire disclosure of which is hereby incorporated by reference into
this specification. As is disclosed in the abstract of this patent,
there is provided "A sustained-release microcapsule contains an
amorphous water-soluble pharmaceutical agent having a particle size of
from 1 nm-10 .mu.m and a polymer. The microcapsule is produced by
dispersing, in an aqueous phase, a dispersion of from 0.001-90% (w/w)
of an amorphous water-soluble pharmaceutical agent in a solution of a
polymer having a wt. avg. molecular weight of 2,000 in an organic
solvent to prepare an s/o/w emulsion and subjecting the emulsion to
in-water drying."
[0343] In one embodiment, and referring to U.S. Pat. No.
5,420,105 (the entire disclosure of which is hereby incorporated by
reference into this specification), the precursor material is selected
from the group consisting of an anti-cancer anthracycline antibiotic,
cis-platinum, methotrexate, vinblastine, mitoxanthrone ARA-C,
6-mercaptopurine, 6-mercaptoguanosine, mytomycin C and a steroid.
[0344] By way of further illustration, the precursor material
is selected from the group consisting of antithrombogenic agents,
antiplatelet agents, prostaglandins, thrombolytic drugs,
antiproliferative drugs, antirejection drugs, antimicrobial drugs,
growth factors, and anticalcifying agents.
[0345] By way of yet further illustration, the precursor
material may, e.g., be any one or more of the therapeutic agents
disclosed in column 5 of U.S. Pat. No. 5,464,650. Thus, and referring
to such column 5, "The therapeutic substance used in the present
invention could be virtually any therapeutic substance which possesses
desirable therapeutic characteristics for application to a blood
vessel. This can include both solid substances and liquid substances.
For example, glucocorticoids (e.g. dexamethasone, betamethasone),
heparin, hirudin, tocopherol, angiopeptin, aspirin, ACE inhibitors,
growth factors, oligonucleotides, and, more generally, antiplatelet
agents, anticoagulant agents, antimitotic agents, antioxidants,
antimetabolite agents, and anti-inflammatory agents could be used.
Antiplatelet agents can include drugs such as aspirin and dipyridamole.
Aspirin is classified as an analgesic, antipyretic, anti-inflammatory
and antiplatelet drug. Dypridimole is a drug similar to aspirin in that
it has anti-platelet characteristics. Dypridimole is also classified as
a coronary vasodilator. Anticoagulant agents can include drugs such as
heparin, coumadin, protamine, hirudin and tick anticoagulant protein.
Antimitotic agents and antimetabolite agents can include drugs such as
methotrexate, azathioprine, vincristine, vinblastine, fluorouracil,
adriamycin and mutamycin."
[0346] The precursors material may be one or more of the drugs
disclosed in U.S. Pat. No. 5,599,352, the entire disclosure of which is
hereby incorporated by reference into this specification. As is
disclosed in this patent, "Examples of drugs that are thought to be
useful in the treatment of restenosis are disclosed in published
international patent application WO9112779 "Intraluminal Drug Eluting
Prosthesis" which is incorporated herein by reference. Therefore,
useful drugs for treatment of restenosis and drugs that can be
incorporated in the fibrin and used in the present invention can
include drugs such as anticoagulant drugs, antiplatelet drugs,
antimetabolite drugs, anti-inflammatory drugs and antimitotic drugs.
Further, other vasoreactive agents such as nitric oxide releasing
agents could also be used . . . . By this method, drugs such as
glucocorticoids (e.g. dexamethasone, betamethasone), heparin, hirudin,
tocopherol, angiopeptin, aspirin, ACE inhibitors, growth factors,
oligonucleotides, and, more generally, antiplatelet agents,
anticoagulant agents, antimitotic agents, antioxidants, antimetabolite
agents, and anti-inflammatory agents can be applied to a stent . . . ."
[0347] By way of yet further illustration, and referring to
U.S. Pat. No. 5,605,696 (the entire disclosure of which is hereby
incorporated by reference into this specification), the precursor may
be a "selected therapeutic drug" that may be, e.g., " . . .
anticoagulant antiplatelet or antithrombin agents such as heparin,
D-phe-pro-arg-chloromethylketone (synthetic antithrombin),
dipyridamole, hirudin, recombinant hirudin, thrombin inhibitor
(available from Biogen), or c7E3 (an antiplatelet drug from Centocore);
cytostatic or antiproliferative agents such as angiopeptin (a
somatostatin analogue from Ibsen), angiotensin converting enzyme
inhibitors such as Captopril (available from Squibb), Cilazapril
(available from Hoffman-LaRoche), or Lisinopril (available from Merk);
calcium channel blockers (such as Nifedipine), colchicine, fibroblast
growth factor (FGF) antagonists, fish oil (omega 3-fatty acid), low
molecular weight heparin (available from Wyeth, and Glycomed),
histamine antagonists, Lovastatin (an inhibitor of HMG-CoA reductase, a
cholesterol lowering drug from Merk), methotrexate, monoclonal
antibodies (such as to PDGF receptors), nitroprusside,
phosphodiesterase inhibitors, prostacyclin and prostacyclin analogues,
prostaglandin inhibitor (available from Glaxo), Seramin (a PDGF
antagonist), serotonin blockers, steroids, thioprotease inhibitors, and
triazolopyrimidine (a PDGF antagonist). Other therapeutic drugs which
may be appropriate include alpha interferon and genetically engineered
epithelial cells, for example."
[0348] By way of yet further illustration, and referring to
U.S. Pat. No. 5,700,286 (the entire disclosure of which is hereby
incorporated by reference into this specification), precursor material
may be a therapeutic agent or drug " . . . including, but not limited
to, antiplatelets, antithrombins, cytostatic and antiproliferative
agents, for example, to reduce or prevent restenosis in the vessel
being treated. The therapeutic agent or drug is preferably selected
from the group of therapeutic agents or drugs consisting of sodium
heparin, low molecular weight heparin, hirudin, argatroban, forskolin,
vapiprost, prostacyclin and prostacyclin analogues, dextran,
D-phe-pro-arg-chloromethylketone, dipyridamole, glycoprotein IIb/IIIa
platelet membrane receptor antibody, recombinant hirudin, thrombin
inhibitor, angiopeptin, angiotensin converting enzyme inhibitors, (such
as Captopril, available from Squibb; Cilazapril, available for
Hoffman-La Roche; or Lisinopril, available from Merck) calcium channel
blockers, colchicine, fibroblast growth factor antagonists, fish oil,
omega 3-fatty acid, histamine antagonists, HMG-CoA reductase inhibitor,
methotrexate, monoclonal antibodies, nitroprusside, phosphodiesterase
inhibitors, prostaglandin inhibitor, seramin, serotonin blockers,
steroids, thioprotease inhibitors, triazolopyrimidine and other PDGF
antagonists, alpha-interferon and genetically engineered epithelial
cells, and combinations thereof."
[0349] By way of yet further illustration, and referring to
U.S. Pat. No. 5,900,433 (the entire disclosure of which is hereby
incorporated by reference into this specification), the precursor
material may be a congener of an endothelium-derived bioactive
composition of matter. This congener is discussed in column 7 of the
patent, wherein it is disclosed that "We have discovered that
administration of a congener of an endothelium-derived bioactive agent,
more particularly a nitrovasodilator, representatively the nitric oxide
donor agent sodium nitroprusside, to an extravascular treatment site,
at a therapeutically effective dosage rate, is effective for abolishing
CFR's while reducing or avoiding systemic effects such as supression of
platelet function and bleeding . . . congeners of an
endothelium-derived bioactive agent include prostacyclin, prostaglandin
E1, and a nitrovasodilator agent. Nitrovasodilater agents include
nitric oxide and nitric oxide donor agents, including L-arginine,
sodium nitroprusside and nitroglycycerine."
[0350] By way of yet further illustration, the precursor
material may be heparin. As is disclosed in U.S. Pat. No. 6,120,536
(the entire disclosure of which is hereby incorporated by reference
into this specification), "While heparin is preferred as the
incorporated active material, agents possibly suitable for
incorporation include antithrobotics, anticoagulants, antibiotics,
antiplatelet agents, thorombolytics, antiproliferatives, steroidal and
non-steroidal antinflammatories, agents that inhibit hyperplasia and in
particular restenosis, smooth muscle cell inhibitors, growth factors,
growth factor inhibitors, cell adhesion inhibitors, cell adhesion
promoters and drugs that may enhance the formation of healthy
neointimal tissue, including endothelial cell regeneration."
[0351] By way of yet further illustration, and referring to
U.S. Pat. No. 6,624,138 (the entire disclosure of which is hereby
incorporated by reference into this specification), the precursor
material may be one or more of the drugs described in this patent.
Thus, and referring to columns 9 et seq. of such patent, "Straub et al.
in U.S. Pat. No. 6,395,300 discloses a wide variety of drugs that are
useful in the methods and compositions described herein, entire
contents of which, including a variety of drugs, are incorporated
herein by reference. Drugs contemplated for use in the compositions
described in U.S. Pat. No. 6,395,300 and herein disclosed include the
following categories and examples of drugs and alternative forms of
these drugs such as alternative salt forms, free acid forms, free base
forms, and hydrates: analgesics/antipyretics. (e.g., aspirin,
acetaminophen, ibuprofen, naproxen sodium, buprenorphine, propoxyphene
hydrochloride, propoxyphene napsylate, meperidine hydrochloride,
hydromorphone hydrochloride, morphine, oxycodone, codeine,
dihydrocodeine bitartrate, pentazocine, hydrocodone bitartrate,
levorphanol, diflunisal, trolamine salicylate, nalbuphine
hydrochloride, mefenamic acid, butorphanol, choline salicylate,
butalbital, phenyltoloxamine citrate, diphenhydramine citrate,
methotrimeprazine, cinnamedrine hydrochloride, and meprobamate);
antiasthamatics (e.g., ketotifen and traxanox); antibiotics (e.g.,
neomycin, streptomycin, chloramphenicol, cephalosporin, ampicillin,
penicillin, tetracycline, and ciprofloxacin); antidepressants (e.g.,
nefopam, oxypertine, doxepin, amoxapine, trazodone, amitriptyline,
maprotiline, pheneizine, desipramine, nortriptyline, tranylcypromine,
fluoxetine, doxepin, imipramine, imipramine pamoate, isocarboxazid,
trimipramine, and protriptyline); antidiabetics (e.g., biguanides and
sulfonylurea derivatives); antifungal agents (e.g., griseofulvin,
ketoconazole, itraconizole, amphotericin B, nystatin, and candicidin);
antihypertensive agents (e.g., propanolol, propafenone, oxyprenolol,
nifedipine, reserpine, trimethaphan, phenoxybenzamine, pargyline
hydrochloride, deserpidine, diazoxide, guanethidine monosulfate,
minoxidil, rescinnamine, sodium nitroprusside, rauwolfia serpentina,
alseroxylon, and phentolamine); anti-inflammatories (e.g.,
(non-steroidal) indomethacin, ketoprofen, flurbiprofen, naproxen,
ibuprofen, ramifenazone, piroxicam, (steroidal) cortisone,
dexamethasone, fluazacort, celecoxib, rofecoxib, hydrocortisone,
prednisolone, and prednisone); antineoplastics (e.g., cyclophosphamide,
actinomycin, bleomycin, daunorubicin, doxorubicin, epirubicin,
mitomycin, methotrexate, fluorouracil, carboplatin, carmustine (BCNU),
methyl-CCNU, cisplatin, etoposide, camptothecin and derivatives
thereof, phenesterine, paclitaxel and derivatives thereof, docetaxel
and derivatives thereof, vinblastine, vincristine, tamoxifen, and
piposulfan); antianxiety agents (e.g., lorazepam, buspirone, prazepam,
chlordiazepoxide, oxazepam, clorazepate dipotassium, diazepam,
hydroxyzine pamoate, hydroxyzine hydrochloride, alprazolam, droperidol,
halazepam, chlormezanone, and dantrolene); immunosuppressive agents
(e.g., cyclosporine, azathioprine, mizoribine, and FK506 (tacrolimus));
antimigraine agents (e.g., ergotamine, propanolol, isometheptene
mucate, and dichloralphenazone); sedatives/hypnotics (e.g.,
barbiturates such as pentobarbital, pentobarbital, and secobarbital;
and benzodiazapines such as flurazepam hydrochloride, triazolam, and
midazolam); antianginal agents (e.g., beta-adrenergic blockers; calcium
channel blockers such as nifedipine, and diltiazem; and nitrates such
as nitroglycerin, isosorbide dinitrate, pentearythritol tetranitrate,
and erythrityl tetranitrate); antipsychotic agents (e.g., haloperidol,
loxapine succinate, loxapine hydrochloride, thioridazine, thioridazine
hydrochloride, thiothixene, fluphenazine, fluphenazine decanoate,
fluphenazine enanthate, trifluoperazine, chlorpromazine, perphenazine,
lithium citrate, and prochlorperazine); antimanic agents (e.g., lithium
carbonate); antiarrhythmics (e.g., bretylium tosylate, esmolol,
verapamil, amiodarone, encainide, digoxin, digitoxin, mexiletine,
disopyramide phosphate, procainamide, quinidine sulfate, quinidine
gluconate, quinidine polygalacturonate, flecainide acetate, tocainide,
and lidocaine); antiarthritic agents (e.g., phenylbutazone, sulindac,
penicillanine, salsalate, piroxicam, azathioprine, indomethacin,
meclofenamate, gold sodium thiomalate, ketoprofen, auranofin,
aurothioglucose, and tolmetin sodium); antigout agents (e.g.,
colchicine, and allopurinol); anticoagulants (e.g., heparin, heparin
sodium, and warfarin sodium); thrombolytic agents (e.g., urokinase,
streptokinase, and alteplase); antifibrinolytic agents (e.g.,
aminocaproic acid); hemorheologic agents (e.g., pentoxifylline);
antiplatelet agents (e.g., aspirin); anticonvulsants (e.g., valproic
acid, divalproex sodium, phenyloin, phenyloin sodium, clonazepam,
primidone, phenobarbitol, carbamazepine, amobarbital sodium,
methsuximide, metharbital, mephobarbital, mephenyloin, phensuximide,
paramethadione, ethotoin, phenacemide, secobarbitol sodium, clorazepate
dipotassium, and trimethadione); antiparkinson agents (e.g.,
ethosuximide); antihistamines/antipruritics (e.g., hydroxyzine,
diphenhydramine, chlorpheniramine, brompheniramine maleate,
cyproheptadine hydrochloride, terfenadine, clemastine fumarate,
triprolidine, carbinoxamine, diphenylpyraline, phenindamine, azatadine,
tripelennamine, dexchlorpheniramine maleate, methdilazine; agents
useful for calcium regulation (e.g., calcitonin, and parathyroid
hormone); antibacterial agents (e.g., amikacin sulfate, aztreonam,
chloramphenicol, chloramphenicol palirtate, ciprofloxacin, clindamycin,
clindamycin palmitate, clindamycin phosphate, metronidazole,
metronidazole hydrochloride, gentamicin sulfate, lincomycin
hydrochloride, tobramycin sulfate, vancomycin hydrochloride, polymyxin
B sulfate, colistimethate sodium, and colistin sulfate); antiviral
agents (e.g., interferon alpha, beta or gamma, zidovudine, amantadine
hydrochloride, ribavirin, and acyclovir); antimicrobials (e.g.,
cephalosporins such as cefazolin sodium, cephradine, cefaclor,
cephapirin sodium, ceftizoxime sodium, cefoperazone sodium, cefotetan
disodium, cefuroxime e azotil, cefotaxime sodium, cefadroxil
monohydrate, cephalexin, cephalothin sodium, cephalexin hydrochloride
monohydrate, cefamandole nafate, cefoxitin sodium, cefonicid sodium,
ceforanide, ceftriaxone sodium, ceftazidime, cefadroxil, cephradine,
and cefuroxime sodium; penicillins such as ampicillin, amoxicillin,
penicillin G benzathine, cyclacillin, ampicillin sodium, penicillin G
potassium, penicillin V potassium, piperacillin sodium, oxacillin
sodium, bacampicillin hydrochloride, cloxacillin sodium, ticarcillin
disodium, azlocillin sodium, carbenicillin indanyl sodium, penicillin G
procaine, methicillin sodium, and nafcillin sodium; erythromycins such
as erythromycin ethylsuccinate, erythromycin, erythromycin estolate,
erythromycin lactobionate, erythromycin stearate, and erythromycin
ethylsuccinate; and tetracyclines such as tetracycline hydrochloride,
doxycycline hyclate, and minocycline hydrochloride, azithromycin,
clarithromycin); anti-infectives (e.g., GM-CSF); bronchodilators (e.g.,
sympathomimetics such as epinephrine hydrochloride, metaproterenol
sulfate, terbutaline sulfate, isoetharine, isoetharine mesylate,
isoetharine hydrochloride, albuterol sulfate, albuterol,
bitolterolmesylate, isoproterenol hydrochloride, terbutaline sulfate,
epinephrine bitartrate, metaproterenol sulfate, epinephrine, and
epinephrine bitartrate; anticholinergic agents such as ipratropium
bromide; xanthines such as aminophylline, dyphylline, metaproterenol
sulfate, and aminophylline; mast cell stabilizers such as cromolyn
sodium; inhalant corticosteroids such as beclomethasone dipropionate
(BDP), and beclomethasone dipropionate monohydrate; salbutamol;
ipratropium bromide; budesonide; ketotifen; salmeterol; xinafoate;
terbutaline sulfate; triamcinolone; theophylline; nedocromil sodium;
metaproterenol sulfate; albuterol; flunisolide; fluticasone
proprionate; steroidal compounds and hormones (e.g., androgens such as
danazol, testosterone cypionate, fluoxymesterone, ethyltestosterone,
testosterone enathate, methyltestosterone, fluoxymesterone, and
testosterone cypionate; estrogens such as estradiol, estropipate, and
conjugated estrogens; progestins such as methoxyprogesterone acetate,
and norethindrone acetate; corticosteroids such as triamcinolone,
betamethasone, betamethasone sodium phosphate, dexamethasone,
dexamethasone sodium phosphate, dexamethasone acetate, prednisone,
methylprednisolone acetate suspension, triamcinolone acetonide,
methylprednisolone, prednisolone sodium phosphate, methylprednisolone
sodium succinate, hydrocortisone sodium succinate, triamcinolone
hexacetonide, hydrocortisone, hydrocortisone cypionate, prednisolone,
fludrocortisone acetate, paramethasone acetate, prednisolone tebutate,
prednisolone acetate, prednisolone sodium phosphate, and hydrocortisone
sodium succinate; and thyroid hormones such as levothyroxine sodium);
hypoglycemic agents (e.g., human insulin, purified beef insulin,
purified pork insulin, glyburide, chlorpropamide, glipizide,
tolbutamide, and tolazamide); hypolipidemic agents (e.g., clofibrate,
dextrothyroxine sodium, probucol, pravastitin, atorvastatin,
lovastatin, and niacin); proteins (e.g., DNase, alginase, superoxide
dismutase, and lipase); nucleic acids (e.g., sense or anti-sense
nucleic acids encoding any therapeutically useful protein, including
any of the proteins described herein); agents useful for erythropoiesis
stimulation (e.g., erythropoietin); antiulcer/antireflux agents (e.g.,
famotidine, cimetidine, and ranitidine hydrochloride);
antinauseants/antiemetics (e.g., meclizine hydrochloride, nabilone,
prochlorperazine, dimenhydrinate, promethazine hydrochloride,
thiethylperazine, and scopolamine); as well as other drugs useful in
the compositions and methods described herein include mitotane,
halonitrosoureas, anthrocyclines, ellipticine, ceftriaxone,
ketoconazole, ceftazidime, oxaprozin, albuterol, valacyclovir,
urofollitropin, famciclovir, flutamide, enalapril, mefformin,
itraconazole, buspirone, gabapentin, fosinopril, tramadol, acarbose,
lorazepan, follitropin, glipizide, omeprazole, fluoxetine, lisinopril,
tramsdol, levofloxacin, zafirlukast, interferon, growth hormone,
interleukin, erythropoietin, granulocyte stimulating factor,
nizatidine, bupropion, perindopril, erbumine, adenosine, alendronate,
alprostadil, benazepril, betaxolol, bleomycin sulfate, dexfenfluramine,
diltiazem, fentanyl, flecainid, gemcitabine, glatiramer acetate,
granisetron, lamivudine, mangafodipir trisodium, mesalamine, metoprolol
fumarate, metronidazole, miglitol, moexipril, monteleukast, octreotide
acetate, olopatadine, paricalcitol, somatropin, sumatriptan succinate,
tacrine, verapamil, nabumetone, trovafloxacin, dolasetron, zidovudine,
finasteride, tobramycin, isradipine, tolcapone, enoxaparin,
fluconazole, lansoprazole, terbinafine, pamidronate, didanosine,
diclofenac, cisapride, venlafaxine, troglitazone, fluvastatin,
losartan, imiglucerase, donepezil, olanzapine, valsartan, fexofenadine,
calcitonin, and ipratropium bromide. These drugs are generally
considered to be water soluble." Any of these water-soluble drugs may
be used as precursors in the process of this invention to make a
composition with the desired magnetic properties.
[0352] As is also disclosed in U.S. Pat. No. 6,624,138,
"Preferred drugs useful in the present invention may include albuterol,
adapalene, doxazosin mesylate, mometasone furoate, ursodiol,
amphotericin, enalapril maleate, felodipine, nefazodone hydrochloride,
valrubicin, albendazole, conjugated estrogens, medroxyprogesterone
acetate, nicardipine hydrochloride, zolpidem tartrate, amlodipine
besylate, ethinyl estradiol, omeprazole, rubitecan, amlodipine
besylate/benazepril hydrochloride, etodolac, paroxetine hydrochloride,
paclitaxel, atovaquone, felodipine, podofilox, paricalcitol,
betamethasone dipropionate, fentanyl, pramipexole dihydrochloride,
Vitamin D3 and related analogues, finasteride, quetiapine fumarate,
alprostadil, candesartan, cilexetil, fluconazole, ritonavir, busulfan,
carbamazepine, flumazenil, risperidone, carbemazepine, carbidopa,
levodopa, ganciclovir, saquinavir, amprenavir, carboplatin, glyburide,
sertraline hydrochloride, rofecoxib carvedilol, halobetasolproprionate,
sildenafil citrate, celecoxib, chlorthalidone, imiquimod, simvastatin,
citalopram, ciprofloxacin, irinotecan hydrochloride, sparfloxacin,
efavirenz, cisapride monohydrate, lansoprazole, tamsulosin
hydrochloride, mofafinil, clarithromycin, letrozole, terbinafine
hydrochloride, rosiglitazone maleate, diclofenac sodium, lomefloxacin
hydrochloride, tirofiban hydrochloride, telmisartan, diazapam,
loratadine, toremifene citrate, thalidomide, dinoprostone, mefloquine
hydrochloride, trandolapril, docetaxel, mitoxantrone hydrochloride,
tretinoin, etodolac, triamcinolone acetate, estradiol, ursodiol,
nelfinavir mesylate, indinavir, beclomethasone dipropionate, oxaprozin,
flutamide, famotidine, nifedipine, prednisone, cefuroxime, lorazepam,
digoxin, lovastatin, griseofulvin, naproxen, ibuprofen, isotretinoin,
tamoxifen citrate, nimodipine, amiodarone, and alprazolam. Specific
non-limiting examples of some drugs that fall under the above
categories include paclitaxel, docetaxel and derivatives, epothilones,
nitric oxide release agents, heparin, aspirin, coumadin, PPACK,
hirudin, polypeptide from angiostatin and endostatin, methotrexate,
5-fluorouracil, estradiol, P-selectin Glycoprotein ligand-1 chimera,
abciximab, exochelin, eleutherobin and sarcodictyin, fludarabine,
sirolimus, tranilast, VEGF, transforming growth factor (TGF)-beta,
Insulin-like growth factor (IGF), platelet derived growth factor
(PDGF), fibroblast growth factor (FGF), RGD peptide, beta or gamma ray
emitter (radioactive) agents, and dexamethasone, tacrolimus,
actinomycin-D, batimastat etc." These drugs also may be used in the
process of this invention to make magnetic compositions.
Another Preferred Compound of the Invention
[0353] In another embodiment of this invention, there is
provided a compound that, in spite of having a molecular weight in
excess of 550, still has a water solubility in excess of about 10
micrograms per milliliter. In particular, there is provided a compound
with a molecular weight of at least about 550, a water solubility of at
least about 10 micrograms per milliliter, a pKa dissociation constant
of from about 1 to about 15, and a partition coefficient of from about
1.0 to about 50.
[0354] The compound of this embodiment of the invention has a
molecular weight of at least about 550. In one embodiment, this
compound has a molecular weight of at least about 700.
[0355] The water solubility of this compound is at least about
1 micrograms per milliliter and, more preferably, at least about 10
micrograms per milliliter. In one embodiment, such compound has a water
solubility of at least about 100 micrograms per milliliter. In yet
another embodiment, such compound has a water solubility of at least
about 1,000 micrograms per milliliter.
[0356] The compound of this embodiment of the invention has a
pKa dissociation constant of from about 1 to about 15. As used herein,
the term "pKa dissociation constant" is equal to -log K.sub.a, wherein
K.sub.a is equal to [H.sub.3O.sup.+][A.sup.-]/[HA], wherein the square
brackets ([ ]) indicate concentration, and wherein A is the counterion.
Reference may be had, e.g., to pages 327-328 of Maitland Jones, Jr.'s
"Organic Chemistry" (W. M. Norton & Company, New York, N.Y., 1997).
Reference may also be had, e.g., to U.S. Pat. Nos. 5,036,164;
5,025,063; 5,767,066; 5,155,162; 5,132,000; and 5,079,134. The entire
disclosure of each of these United States patents is hereby
incorporated by reference into this specification
[0357] As is known to those skilled in the art, and as is
disclosed at pages 39 et seq. of Stephen H. Curry et al.'s "Manual of
Laboratory Pharmacokinetics" (John Wiley & Sons, New York, N.Y.,
1983), "Many drugs are weak acids and/or bases. The degree of
ionization will influence the absorption, distribution, and excretion
in vivo, the solubility at a given pH, the distribution of the drug
between aqueous and organic pahses the choice of pH in liquid
chromatographic separations, etc . . . . From the above it follows that
the pH at which the compound is 50 percent ionized is equal to the
pK.sub.a To determine a value of pK.sub.a the relative concentrations
of ionized and non-ionized forms must be known at a particular pH.
Several methods are available, including potentiometric titration,
conductimetry, solubility, and spectrometry . . . ."
[0358] The compound of this embodiment of the invention
preferably has a partition coefficient of from about 1.0 to about 50.
This partition coefficient is also discussed at pages 41 et seq. of the
aforementioned Curry book, wherein it is disclosed that: "When a solute
is distributed between two immiscible phases, 1 and 2, the ratio of the
activities of the solute in the phases is constant. If the solutions
are dilute and ideal behavior is assumed, then the ratio of the
concentration of the solute will be constant . . . . The constant is
known as the partition (or distribution) coefficient . . . . The
convention with regard to which phase is classed as 1 and which is as 2
is not entirely clear. Usually, partition coefficients are defined as
the concentration in the organic phase divided by the concentration in
the aqueous phase."
[0359] It is preferred to measure the partition coefficient
between water and octane. Means for measuring the partition coefficient
are well known to those skilled in the art and are described, e.g., in
the patent literature. Reference may be had, e.g., to U.S. Pat. Nos.
6,660,288; 6,645,479; 6,585,953; 6,583,136; 6,500,995; 6,475,961;
6.369,001; 6,362,158; 6,315,907; 6,310,013; 6,271,665; 6,218,378;
6,203,817; 6,156,826; 6,124,086; 6,071,409; 6,045,835; 6,042,792;
5,874,481; 5,763,146; 5,555,747; 5,252,320 (complexes having a
partition coefficient above 300); U.S. Pat. Nos. 5,254,342; 5,252,320;
5,164,189; 5,071,769; 5,041,523; 5,013,556; 5,011,982; 5,011,967;
4,986,917; 4,980,453; 4,957,862; 4,940,654; 4,886,656; 4,859,584;
4,762,701; 4,746,745; 4,743,550 (method for improving the partition
coefficient in enzyme containing systems having at least two phases),
U.S. Pat. Nos. 4,736,016; 4,721,730; 4,699,924; 4,619,939; 4,420,473;
4,371,540; 4,363,793; and the like. The entire disclosure of each of
these United States patents is hereby incorporated by reference into
this specification.
[0360] In one embodiment, the compound of this invention has a
tumor uptake of at least about 10 percent and, more preferably, at
least about 20 percent. In one embodiment, the tumor uptake is at least
about 30 percent. In yet another embodiment, the tumor uptake is at
least about 50 percent. In yet another embodiment, the tumor uptake is
at least about 70 percent.
[0361] Tumor uptake is the extent to which the compound is
selectively taken up by tumors from blood. It may be determined by
dissolving 1 milligram of the compound to be tested in 1 milliliter of
"Cremophor EL," a 1:1 (volume/volume) mixture of anhydrous ethanol and
polyethoxylated castor oil. For a discussion of such "Cremophor EL,"
reference may be had, e.g., to U.S. Pat. No. 5,591,715 (methods and
compositions for reducing multidrug resistance), 5,686,488
(polyethoxylated castor oil products as anti-inflammatory agents),
5,776,891 (compositions for reducing multidrug resistance), and the
like. The entire disclosure4 of each of these United States patents is
hereby incorporated by reference into this specification.
[0362] The mixture of the compound to be tested and "Cremophor
EL" is injected ito the blood supply (artery) of a laboratory rat, near
the tumor. Thirty seconds later the rate is sacrificed, the tumor is
removed, and it and the blood are analyzed for the presence of the
compound. Both the arterial blood and the venous drainage beyond the
tumor are analyzed. The percent tumor uptake is equal to
([C.sub.a-C.sub.v]/C.sub.a).times.100, wherein C.sub.a is the
concentration of the compound in the arterial blood, and C.sub.v is the
concentration of the compound in the venous blood.
[0363] Other conventional means may be used to determine the
tumor uptake. Reference may be had, e.g., to U.S. Pat. Nos. 4,448,762;
5,077,034; 5,094,835; 5,135,717; 5,166,944; 5,284,831; 5,391,547;
5,399,338; 5,474,772; 5,516,940; 5,578,287; 5,595,738; 5,601,800;
5,608,060; 5,616,690; 5,624,798; 5,624,896; 5,683,873; 5,688,501;
5,753,262; 5,762,909; 5,783,169; 5,810,888; 5,811,073; 5,820,873;
5,847,121; 5,869,248; 5,877,162; 5,891,689; 5,902,604; 5,911,969;
5,914,312; 5,955,605; 5,965,598; 5,976,535; 5,976,874;6,008,319;
6,022,522; 6,022,966; 6,025,165; 6,027,725; 6,057,153; 6,074,626;
6,103,889; 6,121,424; 6,165,441; 6,171,577; 6,172,045; 6,197,333;
6,217,869; 6,217,886; 6,235,264; 6,242,477; 6,331,287; 6,348,214;
6,358,490; 6,403,096; 6,426,400; 6,436,708; 6,441,158; 6,458,336;
6,498,181; 6,515,110; 6,537,521; 6,610,478; 6,617,135; 6,620,805;
6,624,187; 6,723,318; 6,734,171; 6,685,915; and the like. The entire
disclosure of each of these United States patents is hereby
incorporated by reference into this specification.
Guided Delivery of the Compounds of this Invention
[0364] In one preferred embodiment, the magnetic properties of
the anti-mitotic compound of this invention are used in order to
preferentially deliver such compound to a specified site. In another
embodiment, the magnetic properties of the compounds and compositions
of this invention which are not necessarily anti-mitotic but have the
desired magnetic properties also may be used to deliver such compounds
and/or compositions to a desired site.
[0365] Thus, by way of illustration, one may guide delivery of
the compound of this invention with conventional magnetic focusing
means. In one aspect of this embodiment, a magnetic field of a
specified strength is focused onto a desired therapeutic site, such as
a tumor to be treated, whereby the compound is selectively drawn to the
therapeutic site and binds with tubulin molecules at the site. In one
embodiment, the focused magnetic field has a field strength of at least
about 6 Tesla in order to cause microtubules to move linearly. The
magnetic field may, e.g., be focused for a period of at least about 30
minutes following the administration of the compound of this invention.
[0366] One may use any of the conventional magnetic field
generators known to those skilled in the art to produce such a magnetic
field. Thus, e.g., one may use one or more of the magnetic field
generators disclosed in U.S. Pat. Nos. 6,503,364; 6,377,149 (magnetic
field generator for magnetron plasma generation); U.S. Pat. No.
6,353,375 (magnetostatic wave device); U.S. Pat. No. 6,340,888
(magnetic field generator for MRI); U.S. Pat. Nos. 6,336,989; 6,335,617
(device for calibrating a magnetic field generator); U.S. Pat. Nos.
6,313,632; 6,297,634; 6,275,128; 6,246,066 (magnetic field generator
and charged particle beam irradiator); U.S. Pat. No. 6,114,929
(magnetostatic wave device); U.S. Pat. No. 6,099,459 (magnetic field
generating device and method of generating and applying a magnetic
field); U.S. Pat. Nos. 5,795,212; 6,106,380 (deterministic
magnetorheological finishing); U.S. Pat. No. 5,839,944 (apparatus for
deterministic magnetorheological finishing); U.S. Pat. No. 5,971,835
(system for abrasive jet shaping and polishing of a surface using a
magnetorheological fluid); U.S. Pat. Nos. 5,951,369; 6,506,102 (system
for magnetorheological finishing of substrates); U.S. Pat. Nos.
6,267,651; 6,309,285 (magnetic wiper); U.S. Pat. No. 5,929,732 and U.S.
Pat. No. 6,488,615 (which describe devices and methods for creating a
high intensity magnetic field for magnetically guiding a anti-mitotic
compound to a predetermined site within a biological organism), and the
like. The entire disclosure of each of these United States patents is
hereby incorporated by reference into this specification.
The Use of Externally Applied Energy to Affect an Implanted
Medical Device
[0367] The prior art discloses many devices in which an
externally applied electromagnetic field (i.e., a field originating
outside of a biological organism, such as a human body) is generated in
order to influence one or more implantable devices disposed within the
biological organism; these may be used in conjunction with anti-mitotic
compound of this invention. Some of these devices are described below.
[0368] U.S. Pat. No. 3,337,776 describes a device for producing
controllable low frequency magnetic fields; the entire disclosure of
this patent is hereby incorporated by reference into this
specification. Thus, e.g., claim 1 of this patent describes a
biomedical apparatus for the treatment of a subject with controllable
low frequency magnetic fields, comprising solenoid means for creating
the magnetic field. These low-frequency magnetic fields may be used to
affect the anti-mitotic compounds of this invention, and/or tubulin
and/or microtubules and/or other moieties.
[0369] U.S. Pat. No. 3,890,953 also discloses an apparatus for
promoting the growth of bone and other body tissues by the application
of a low frequency alternating magnetic field; the entire disclosure of
this United States patent is hereby incorporated by reference into this
specification. This patent claims "In an electrical apparatus for
promoting the growth of bone and other body tissues by the application
thereto of a low frequency alternating magnetic field, such apparatus
having current generating means and field applicator means, the
improvement wherein the applicator means comprises a flat solenoid coil
having an axis about which the coil is wound and composed of a
plurality of parallel and flexible windings, each said winding having
two adjacent elongate portions and two 180.degree. coil bends joining
said elongate portions together, said coil being flexible in the coil
plane in the region of said elongate portion for being bent into a
U-shape, said coil being bent into such U-shape about an axis parallel
to the coil axis and adapted for connection to a source of low
frequency alternating current." These low-frequency magnetic fields may
be used to affect the anti-mitotic compounds of this invention, and/or
tubulin and/or microtubules and/or other moieties.
[0370] The device of U.S. Pat. No. 3,890,953 is described, in
part, at lines 52 et seq. of column 2, wherein it is disclosed that: "
. . . The apparatus shown diagrammatically in FIG. 1 comprises a AC
generator 10, which supplies low frequency AC at the output terminals
12. The frequency of the AC lies below 150 Hz, for instance between 1
and 50 or 65 Hz. It has been found particularly favorable to use a
frequency range between 5 or 10 and 30 Hz, for example 25 Hz. The half
cycles of the alternating current should have comparatively gently
sloping leading and trailing flanks (rise and fall times of the half
cycles being for example in the order of magnitude of a quarter to an
eighth of the length of a cycle); the AC can thus be a sinusoidal
current with a low non-linear distortion, for example less than 20
percent, or preferably less than 10 percent, or a triangular wave
current."
[0371] U.S. Pat. No. 4,095,588 discloses a "vascular cleansing
device" adapted to " . . . effect motion of the red corpuscles in the
blood stream of a vascular system . . . whereby these red cells may
cleanse the vascular system by scrubbing the walls thereof . . . ;" the
entire disclosure of this United States patent is hereby incorporated
by reference into this specification. This patent claims (in claim 3)
"A means to propel a red corpuscle in a vibratory and rotary fashion,
said means comprising an electronic circuit and magnetic means
including: a source of electrical energy; a variable oscillator
connected to said source; a binary counter means connected to said
oscillator to produce sequential outputs; a plurality of deflection
amplifier means connected to be operable by the outputs of said binary
counter means in a sequential manner, said amplifier means thereby
controlling electrical energy from said source; a plurality of separate
coils connected in separate pairs about an axis in series between said
deflection amplifier means and said source so as to be sequentially
operated in creating an electromagnetic field from one coil to the
other and back again and thence to adjacent separate coils for rotation
of the electromagnetic field from one pair of coils to another; and a
table within the space encircled by said plurality of coils, said table
being located so as to place a person along the axis such that the red
corpuscles of the person's vascular system are within the
electromagnetic field between the coils creating same." The energy used
to affect such red blood corpuscles may also be used affect the
anti-mitotic compounds of this invention, and/or tubulin and/or
microtubules and/or other moieties.
[0372] U.S. Pat. No. 4,323,075 discloses an implantable
defibrillator with a rechargeable power supply; the entire disclosure
of this patent is hereby incorporated by reference into this
specification. Claim 1 of this patent describes "A fully implantable
power supply for use in a fully implantable defibrillator having an
implantable housing, a fibrillation detector for detecting fibrillation
of the heart of a recipient, an energy storage and discharge device for
storing and releasing defibrillation energy into the heart of the
recipient and an inverter for charging the energy storage and discharge
device in response to detection of fibrillation by the fibrillation
detector, the inverter requiring a first level of power to be
operational and the fibrillation detector requiring a second level of
power different from said first level of power to be operational, said
power supply comprising: implantable battery means positioned within
said implantable housing, said battery means including a plurality of
batteries arranged in series, each of said batteries having a pair of
output terminals, each of said batteries producing a distinctly
multilevel voltage across its pair of output terminals, said voltage
being at a first level when the battery is fully charged and dropping
to a second level at some point during the discharge of the battery;
and implantable circuit means positioned within said implantable
housing, said circuit means for creating a first conductive path
between said serially-connected batteries and said fibrillation
detector to provide said fibrillation detector with said second level
of power, and for creating a second conductive path between said
inverter and said battery means by placing only the batteries operating
at said first level voltage in said second conductive path, and
excluding the remaining batteries from said second conductive path to
provide said inverter with said first level of power." The power supply
of this patent may be used to power, e.g., one or more magnetic
focusing devices.
[0373] U.S. Pat. No. 4,340,038 discloses an implanted medical
system comprised of magnetic field pick-up means for converting
magnetic energy to electrical energy; the entire disclosure of this
patent is hereby incorporated by reference into this specification. One
may use the electrical energy produced by such pick-up means to affect
the anti-mitotic compounds of this invention, and/or tubulin and/or
microtubules and/or other moieties. Such energy may also be used to
power an implanted magnetic focusing device.
[0374] In column 1 of U.S. Pat. No. 4,340,038, at lines 12 et
seq., it is disclosed that "Many types of implantable devices
incorporate a self-contained transducer for converting magnetic energy
from an externally-located magnetic field generator to energy usable by
the implanted device. In such a system having an implanted device and
an externally-located magnetic field generator for powering the device,
sizing and design of the power transfer system is important. In order
to properly design the power transfer system while at the same time
avoiding overdesign, the distance from the implanted device to the
magnetic field generator must be known. However for some types of
implanted devices the depth of the implanted device in a recipient's
body is variable, and is not known until the time of implantation by a
surgeon. One example of such a device is an intracranial pressure
monitoring device (ICPM) wherein skull thickness varies considerably
between recipients and the device must be located so that it protrudes
slightly below the inner surface of the skull and contacts the dura,
thereby resulting in a variable distance between the top of the
implanted device containing a pick-up coil or transducer and the outer
surface of the skull. One conventional technique for accommodating an
unknown distance between the magnetic field generator and the implanted
device includes increasing the transmission power of the external
magnetic field generator. However this increased power can result in
heating of the implanted device, the excess heat being potentially
hazardous to the recipient. A further technique has been to increase
the diameter of the pick-up coil in the implanted device. However,
physical size constraints imposed on many implanted devices such as the
ICPM are critical; and increasing the diameter of the pick-up coil is
undesirable in that it increases the size of the orifice which must be
formed in the recipient's skull. The concentrator of the present
invention solves the above problems by concentrating magnetic lines of
flux from the magnetic generator at the implanted pick-up coil, the
concentrator being adapted to accommodate distance variations between
the implanted device and the magnetic field generator.`
[0375] Claim 1 of U.S. Pat. No. 4,340,038 describes "In a
system including an implanted device having a magnetic field pick-up
means for converting magnetic energy to electrical energy for
energizing said implanted device, and an external magnetic field
generator located so that magnetic lines of flux generated thereby
intersect said pick-up means, a means for concentrating a portion of
said magnetic lines of flux at said pick-up means comprising a metallic
slug located between said generator and said pick-up means, thereby
concentrating said magnetic lines of flux at said pick-up means. "Claim
5 of this patent further describes the pick-up means as comprising " .
. . a magnetic pick-up coil and said slug is formed in the shape of a
truncated cone and oriented so that a plane defined by the smaller of
said cone end surfaces is adjacent to said substantially parallel to a
plane defined by said magnetic pick-up coil." In one embodiment, such
pick-up means may be located near the site to be treated (such as a
tumor) and may be used to affect the tumor by, e.g., hyperthermia
treatment.
[0376] U.S. Pat. No. 4,361,153 discloses an implantable
telemetry system; the entire disclosure of such United States patent is
hereby incorporated by reference into this specification. Such an
implantable telemetry system, equipped with a multiplicity of sensors,
may be used to report how the anti-mitotic compounds of this invention,
and/or tubulin and/or microtubules and/or other moieties respond to
applied electromagnetic fields.
[0377] As is disclosed at column 1 of U.S. Pat. No. 4,361,153
(see lines 9 et seq.), "Externally applied oscillating magnetic fields
have been used before with implanted devices. Early inductive cardiac
pacers employed externally generated electromagnetic energy directly as
a power source. A coil inside the implant operated as a secondary
transformer winding and was interconnected with the stimulating
electrodes. More recently, implanted stimulators with rechargeable
(e.g., nickel cadmium) batteries have used magnetic transmission to
couple energy into a secondary winding in the implant to energize a
recharging circuit having suitable rectifier circuitry. Miniature reed
switches have been utilized before for implant communications. They
appear to have been first used to allow the patient to convert from
standby or demand mode to fixed rate pacing with an external magnet.
Later, with the advent of programmable stimulators, reed switches were
rapidly cycled by magnetic pulse transmission to operate pulse
parameter selection circuitry inside the implant. Systems analogous to
conventional two-way radio frequency (RF) and optical communication
system have also been proposed. The increasing versatility of implanted
stimulators demands more complex programming capabilities. While
various systems for transmitting data into the implant have been
proposed, there is a parallel need to develop compatible telemetry
systems for signalling out of the implant. However, the austere energy
budget constraints imposed by long life, battery operated implants rule
out conventional transmitters and analogous systems"
[0378] The solution provided by U.S. Pat. No. 4,361,153 is " .
. . achieved by the use of a resonant impedance modulated transponder
in the implant to modulate the phase of a relatively high energy
reflected magnetic carrier imposed from outside of the body." In
particular, and as is described by claim 1 of this patent, there is
claimed "An apparatus for communicating variable information to an
external device from an electronic stimulator implanted in a living
human patient, comprising an external unit including means for
transmitting a carrier signal, a hermetically sealed fully implantable
enclosure adapted to be implanted at a fixed location in the patient's
body, means within said enclosure for generating stimulator outputs, a
transponder within said enclosure including tuned resonant circuit
means for resonating at the frequency of said carrier signal so as to
re-radiate a signal at the frequency of said carrier signal, and means
for superimposing an information signal on the reflected signal by
altering the resonance of said tuned circuit means in accordance with
an information signal, said superimposing means including a variable
impedance load connected across said tuned circuit and means for
varying the impedance of said load in accordance with an information
signal, said external unit further including pickup means for receiving
the reflected signal from said transponder and means for recovering the
information signal superimposed thereon, said receiving means including
means responsive to said reflected signal from said transponder for
producing on associated analog output signal, and said recovering means
including phase shift detector means responsive to said analog output
signal for producing an output signal related to the relative phase
angle thereof."
[0379] U.S. Pat. No. 4,408,607 discloses a rechargeable,
implantable capacitive energy source; the entire disclosure of this
patent is hereby incorporated into this specification by reference; and
this source may be used to directly or indirectly supply energy to one
or more of the anti-mitotic compounds of this invention, and/or tubulin
and/or microtubules and/or other moieties. As is disclosed in column 1
of such patent (at lines 12 et seq.), "Medical science has advanced to
the point where it is possible to implant directly within living bodies
electrical devices necessary or advantageous to the welfare of
individual patients. A problem with such devices is how to supply the
electrical energy necessary for their continued operation. The devices
are, of course, designed to require a minimum of electrical energy, so
that extended operation from batteries may be possible. Lithium
batteries and other primary, non-rechargeable cells may be used, but
they are expensive and require replacement of surgical procedures.
Nickel-cadmium and other rechargeable batteries are also available, but
have limited charge-recharge characteristics, require long intervals
for recharging, and release gas during the charging process."
[0380] The solution to this problem is described, e.g., in
claim 1 of the patent, which describes "An electric power supply for
providing electrical energy to an electrically operated medical device
comprising: capacitor means for accommodating an electric charge; first
means providing a regulated source of unidirectional electrical energy;
second means connecting said first means to said capacitor means for
supplying charging current to said capacitor means at a first voltage
which increases with charge in the capacitor means; third means
deriving from said first means a comparison second voltage of constant
magnitude; comparator means operative when said first voltage reaches a
first value to reduce said first voltage to a second, lower value; and
voltage regulator means connected to said capacitor means and medical
device to limit the voltage supplied to the medical device."
[0381] U.S. Pat. No. 4,416,283 discloses an implantable shunted
coil telemetry transponder employed as a magnetic pulse transducer for
receiving externally transmitted data; the entire disclosure of this
United States patent is hereby incorporated by reference into this
specification. This transponder may be used in a manner similar to that
of the aforementioned telemetry system.
[0382] In particular, a programming system for a biomedical
implant is described in claim 1 of U.S. Pat. No. 4,416,283. Such claim
1 discloses "In a programming system for a biomedical implant of the
type wherein an external programmer produces a series of magnetic
impulses which are received and transduced to form a corresponding
electrical pulse input to programmable parameter data registers inside
the implant, wherein the improvement comprises external programming
pulse receiving and transducing circuitry in the implant including a
tuned coil, means responsive to pairs of successive voltage spikes of
opposite polarity magnetically induced across said tuned coil by said
magnetic impulses for forming corresponding binary pulses duplicating
said externally generated magnetic impulses giving rise to said spikes,
and means for outputting said binary pulses to said data registers to
accomplish programming of the implant."
[0383] U.S. Pat. No. 4,871,351 discloses an implantable pump
infusion system; the entire disclosure of this United States patent is
hereby incorporated by reference into this specification. These
implantable pumps are discussed in column 1 of the patent, wherein it
is disclosed that: "Certain human disorders, such as diabetes, require
the injection into the body of prescribed amounts of medication at
prescribed times or in response to particular conditions or events.
Various kinds of infusion pumps have been propounded for infusing drugs
or other chemicals or solutions into the body at continuous rates or
measured dosages. Examples of such known infusion pumps and dispensing
devices are found in U.S. Pat. Nos. 3,731,861; 3,692,027; 3,923,060;
4,003,379; 3,951,147; 4,193,397; 4,221,219 and 4,258,711. Some of the
known pumps are external and inject the drugs or other medication into
the body via a catheter, but the preferred pumps are those which are
fully implantable in the human body." One may use the implantable pumps
of this patent to delivery the anti-mitotic compound of this invention
to a specified site and, thereafter, to "finely focus" such delivery by
means of magnetic focusing means.
[0384] U.S. Pat. No. 4,871,351 also discloses that:
"Implantable pumps have been used in infusion systems such as those
disclosed in U.S. Pat. Nos. 4,077,405; 4,282,872; 4,270,532; 4,360,019
and 4,373,527. Such infusion systems are of the open loop type. That
is, the systems are pre-programmed to deliver a desired rate of
infusion. The rate of infusion may be programmed to vary with time and
the particular patient. A major disadvantage of such open loop systems
is that they are not responsive to the current condition of the
patient, i.e. they do not have feedback information. Thus, an infusion
system of the open loop type may continue dispensing medication
according to its pre-programmed rate or profile when, in fact, it may
not be needed."
[0385] U.S. Pat. No. 4,871,351 also discloses that: "There are
known closed loop infusion systems which are designed to control a
particular condition of the body, e.g. the blood glucose concentration.
Such systems use feedback control continuously, i.e. the patient's
blood is withdrawn via an intravenous catheter and analysed
continuously and a computer output signal is derived from the actual
blood glucose concentration to drive a pump which infuses insulin at a
rate corresponding to the signal. The known closed loop systems suffer
from several disadvantages. First, since they monitor the blood glucose
concentration continuously they are complex and relatively bulky
systems external to the patient, and restrict the movement of the
patient. Such systems are suitable only for hospital bedside
applications for short periods of time and require highly trained
operating staff. Further, some of the known closed loop systems do not
allow for manually input overriding commands. Examples of closed loop
systems are found in U.S. Pat. Nos. 4,055,175; 4,151,845 and
4,245,634."
[0386] U.S. Pat. No. 4,871,351 also discloses that "An
implanted closed loop system with some degree of external control is
disclosed in U.S. Pat. No. 4,146,029. In that system, a sensor (either
implanted or external) is arranged on the body to sense some kind of
physiological, chemical, electrical or other condition at a particular
site and produced data which corresponds to the sensed condition at the
sensed site. This data is fed directly to an implanted microprocessor
controlled medication dispensing device. A predetermined amount of
medication is dispensed in response to the sensed condition according
to a pre-programmed algorithm in the microprocessor control unit. An
extra-corporeal coding pulse transmitter is provided for selecting
between different algorithms in the microprocessor control unit. The
system of U.S. Pat. No. 4,146,029 is suitable for use in treating only
certain ailments such as cardiac conditions. It is unsuitable as a
blood glucose control system for example, since (i) it is not
practicable to measure the blood glucose concentration continuously
with an implanted sensor and (ii) the known system is incapable of
dispensing discrete doses of insulin in response to certain events,
such as meals and exercise. Furthermore, there are several
disadvantages to internal sensors; namely, due to drift, lack of
regular calibration and limited life, internal sensors do not have high
long-term reliability. If an external sensor is used with the system of
U.S. Pat. No. 4,146,029, the output of the sensor must be fed through
the patient's skin to the implanted mechanism. There are inherent
disadvantages to such a system, namely the high risk of infection.
Since the algorithms which control the rate of infusion are programmed
into the implanted unit, it is not possible to upgrade these algorithms
without surgery. The extra-corporeal controller merely selects a
particular one of several medication programs but cannot actually alter
a program."
[0387] U.S. Pat. No. 4,871,351 also discloses that "It is an
object of the present invention to overcome, or substantially
ameliorate the above described disadvantages of the prior art by
providing an implantable open loop medication infusion system with a
feedback control option"
[0388] The solution to this problem is set forth in claim 1 of
U.S. Pat. No. 4,871,351,which describes: "A medical infusion system
intermittently switchable at selected times between an open loop system
without feedback and a closed loop system with feedback, said system
comprising an implantable unit including means for controllably
dispensing medication into a body, an external controller, and an
extra-corporeal sensor; wherein said implantable unit comprises an
implantable transceiver means for communicating with a similar external
transceiver means in said external controller to provide a telemetry
link between said controller and said implantable unit, a first
reservoir means for holding medication liquid, a liquid dispensing
device, a pump connected between said reservoir means and said liquid
dispensing device, and a first electronic control circuit means
connected to said implantable transceiver means and to said pump to
operate said pump; wherein said external controller comprises a second
electronic control circuit means connected with said external
transceiver means, a transducer means for reading said sensor, said
transducer means having an output connected to said second electronic
control circuit means, and a manually operable electric input device
connected to said second electronic control circuit means; wherein said
pump is operable by said first electronic control circuit means to pump
said medication liquid from said first reservoir means to said
liquid-dispensing device at a first predetermined rate independent of
the output of said extra-corporeal sensor, and wherein said input
device or said transducer means include means which selectively
operable at intermittent times to respectively convey commands or
output of said transducer representing the reading of said sensor to
said second control circuit to instruct said first control circuit via
said telemetry link to modify the operation of said pump."
[0389] U.S. Pat. No. 4,941,461 describes an electrically
actuated inflatable penile erection device comprised of an implantable
induction coil and an implantable pump; the entire disclosure of this
United States patent is hereby incorporated by reference into this
specification. The device of this patent is described, e.g., in claim 1
of the patent, which discloses "An apparatus for achieving a penile
erection in a human male, comprising: at least one elastomer cylinder
having a root chamber and a pendulous chamber, said elastomer cylinder
adapted to be placed in the corpus carvenosum of the penis; an external
magnetic field generator which can be placed over some section of the
penis which generates an alternating magnetic field; an induction coil
contained within said elastomer cylinder which produces an alternating
electric current when in the proximity of said alternating magnetic
filed which is produced by said external magnetic field generator; and
a fluid pumping means located within said elastomer cylinder, said
pumping means being operated by the electrical power generated in said
induction coil to pump fluid from said root chamber to said pendulous
chamber in order to stiffen said elastomer cylinder for causing the
erect state of the penis."
[0390] U.S. Pat. No. 5,487,760 discloses an implantable signal
transceiver disposed in an artificial heart valve; this transceiver may
be used in the process of this invention in accordance with the
aforementioned telemetry device; and the entire disclosure of this
United States patent is hereby incorporated by reference into this
specification. Claim 1 of this patent describes: "In combination, an
artificial heart valve of the type having a tubular body member,
defining a lumen and pivotally supporting at least one occluder, said
body member having a sewing cuff covering an exterior surface of said
body member; and an electronic sensor module disposed between said
sewing cuff and said exterior surface, wherein said sensor module
incorporates a sensor element for detecting movement of said at least
one occluder between an open and a closed disposition relative to said
lumen and wherein said sensor module further includes a signal
transceiver coupled to said sensor element, and means for energizing
said signal transceiver, and wherein said sensor module includes means
for encapsulating said sensor element, signal transceiver and
energizing means in a moisture-impervious container."
[0391] As will be apparent to those skilled in the art, the
sensor/transceiver combination may advantageously be used in
conjunction with the anti-mitotic compound of this invention, and/or
microtubules.
[0392] U.S. Pat. No. 5,702,430 discloses an implantable power
supply; the entire disclosure of such patent is hereby incorporated by
reference into this specification. This implantable power supply may be
used to supply power to either the compound of this invention, the
treatment site, and/or one or more other devices from which a specified
energy output is desired.
[0393] Claim 1 of U.S. Pat. No. 5,702,430 describes: "A
surgically implantable power supply comprising battery means for
providing a source of power, charging means for charging the battery
means, enclosure means isolating the battery means from the human body,
gas holding means within the enclosure means for holding gas generated
by the battery means during charging, seal means in the enclosure means
arranged to rapture when the internal gas pressure exceeds a certain
value and inflatable gas container means outside the enclosure means to
receive gas from within the enclosure means when the seal means has
been ruptured."
[0394] Columns 1 through 5 of U.S. Pat. No. 5,702,430 presents
an excellent discussion of "prior art" implantable pump assemblies that
may be used, e.g., to deliver the anti-mitotic compound of this
invention. As is disclosed in such portion of U.S. Pat. No. 5,702,430,
"The most widely tested and commonly used implantable blood pumps
employ variable forms of flexible sacks (also spelled sacs) or
diaphragms which are squeezed and released in a cyclical manner to
cause pulsatile ejection of blood. Such pumps are discussed in books or
articles such as Hogness and Antwerp 1991, DeVries et al 1984, and
Farrar et al 1988, and in U.S. Pat. No. 4,994,078 (Jarvik 1991), U.S.
Pat. No. 4,704,120 (Slonina 1987), U.S. Pat. No. 4,936,758 (Coble
1990), and U.S. Pat. No. 4,969,864 (Schwarzmann et al 1990). Sack or
diaphragm pumps are subject to fatigue failure of compliant elements
and as such are mechanically and functionally quite different from the
pump which is the subject of the present invention."
[0395] U.S. Pat. No. 5,702,430 also discloses that "An entirely
different class of implantable blood pumps uses rotary pumping
mechanisms. Most rotary pumps can be classified into two categories:
centrifugal pumps and axial pumps. Centrifugal pumps, which include
pumps marketed by Sarns (a subsidiary of the 3M Company) and Biomedicus
(a subsidiary of Medtronic, Eden Prairie, Minn.), direct blood into a
chamber, against a spinning interior wall (which is a smooth disk in
the Medtronic pump). A flow channel is provided so that the centrifugal
force exerted on the blood generates flow."
[0396] U.S. Pat. No. 5,702,430 also discloses that "By
contrast, axial pumps provide blood flow along a cylindrical axis,
which is in a straight (or nearly straight) line with the direction of
the inflow and outflow. Depending on the pumping mechanism used inside
an axial pump, this can in some cases reduce the shearing effects of
the rapid acceleration and deceleration forces generated in centrifugal
pumps. However, the mechanisms used by axial pumps can inflict other
types of stress and damage on blood cells."
[0397] U.S. Pat. No. 5,702,430 also discloses that "Some types
of axial rotary pumps use impeller blades mounted on a center axle,
which is mounted inside a tubular conduit. As the blade assembly spins,
it functions like a fan, or an outboard motor propeller. As used
herein, "impeller" refers to angled vanes (also called blades) which
are constrained inside a flow conduit; an impeller imparts force to a
fluid that flows through the conduit which encloses the impeller. By
contrast, "propeller" usually refers to non-enclosed devices, which
typically are used to propel vehicles such as boats or airplanes."
[0398] "Another type of axial blood pump, called the
"Haemopump" (sold by Nimbus) uses a screw-type impeller with a classic
screw (also called an Archimedes screw; also called a helifoil, due to
its helical shape and thin cross-section). Instead of using several
relatively small vanes, the Haemopump screw-type impeller contains a
single elongated helix, comparable to an auger used for drilling or
digging holes. In screw-type axial pumps, the screw spins at very high
speed (up to about 10,000 rpm). The entire Haemopump unit is usually
less than a centimeter in diameter. The pump can be passed through a
peripheral artery into the aorta, through the aortic valve, and into
the left ventricle. It is powered by an external motor and drive unit."
[0399] U.S. Pat. No. 5,702,430 also discloses that "Centrifugal
or axial pumps are commonly used in three situations: (1) for brief
support during cardio-pulmonary operations, (2) for short-term support
while awaiting recovery of the heart from surgery, or (3) as a bridge
to keep a patient alive while awaiting heart transplantation. However,
rotary pumps generally are not well tolerated for any prolonged period.
Patients who must rely on these units for a substantial length of time
often suffer from strokes, renal (kidney) failure, and other organ
dysfunction. This is due to the fact that rotary devices, which must
operate at relatively high speeds, may impose unacceptably high levels
of turbulent and laminar shear forces on blood cells. These forces can
damage or lyse (break apart) red blood cells. A low blood count
(anemia) may result, and the disgorged contents of lysed blood cells
(which include large quantities of hemoglobin) can cause renal failure
and lead to platelet activation that can cause embolisms and stroke."
[0400] "One of the most important problems in axial rotary
pumps in the prior art involves the gaps that exist between the outer
edges of the blades, and the walls of the flow conduit. These gaps are
the site of severe turbulence and shear stresses, due to two factors.
Since implantable axial pumps operate at very high speed, the outer
edges of the blades move extremely fast and generate high levels of
shear and turbulence. In addition, the gap between the blades and the
wall is usually kept as small as possible to increase pumping
efficiency and to reduce the number of cells that become entrained in
the gap area. This can lead to high-speed compression of blood cells as
they are caught in a narrow gap between the stationary interior wall of
the conduit and the rapidly moving tips or edges of the blades."
[0401] U.S. Pat. No. 5,702,430 also discloses that "An
important factor that needs to be considered in the design and use of
implantable blood pumps is "residual cardiac function," which is
present in the overwhelming majority of patients who would be
candidates for mechanical circulatory assistance. The patient's heart
is still present and still beating, even though, in patients who need
mechanical pumping assistance, its output is not adequate for the
patient's needs. In many patients, residual cardiac functioning often
approaches the level of adequacy required to support the body, as
evidenced by the fact that the patient is still alive when implantation
of an artificial pump must be considered and decided. If cardiac
function drops to a level of severe inadequacy, death quickly becomes
imminent, and the need for immediate intervention to avert death
becomes acute."
[0402] U.S. Pat. No. 5,702,430 also discloses that "Most
conventional ventricular assist devices are designed to assume complete
circulatory responsibilities for the ventricle they are "assisting. As
such, there is no need, nor presumably any advantage, for the device to
interact in harmony with the assisted ventricle. Typically, these
devices utilize a "fill-to-empty" mode that, for the most part, results
in emptying of the device in random association with native heart
contraction. This type of interaction between the device and assisted
ventricle ignores the fact that the overwhelming majority of patients
who would be candidates for mechanical assistance have at least some
significant residual cardiac function."
[0403] U.S. Pat. No. 5,702,430 also discloses that "It is
preferable to allow the natural heart, no matter how badly damaged or
diseased it may be, to continue contributing to the required cardiac
output whenever possible so that ventricular hemodynamics are disturbed
as little as possible. This points away from the use of total cardiac
replacements and suggests the use of "assist" devices whenever
possible. However, the use of assist devices also poses a very
difficult problem: in patients suffering from severe heart disease,
temporary or intermittent crises often require artificial pumps to
provide "bridging" support which is sufficient to entirely replace
ventricular pumping capacity for limited periods of time, such as in
the hours or days following a heart attack or cardiac arrest, or during
periods of severe tachycardia or fibrillation."
[0404] U.S. Pat. No. 5,702,430 also discloses that
"Accordingly, an important goal during development of the described
method of pump implantation and use and of the surgically implantable
reciprocating pump was to design a method and a device which could
cover a wide spectrum of requirements by providing two different and
distinct functions. First, an ideal cardiac pumping device should be
able to provide "total" or "complete" pumping support which can keep
the patient alive for brief or even prolonged periods, if the patient's
heart suffers from a period of total failure or severe inadequacy.
Second, in addition to being able to provide total pumping support for
the body during brief periods, the pump should also be able to provide
a limited "assist" function. It should be able to interact with a
beating heart in a cooperative manner, with minimal disruption of the
blood flow generated by the natural heartbeat. If a ventricle is still
functional and able to contribute to cardiac output, as is the case in
the overwhelming majority of clinical applications, then the pump will
assist or augment the residual cardiac output. This allows it to take
advantage of the natural, non-hemolytic pumping action of the heart to
the fullest extent possible; it minimizes red blood cell lysis, it
reduces mechanical stress on the pump, and it allows longer pump life
and longer battery life."
[0405] "Several types of surgically implantable blood pumps
containing a piston-like member have been developed to provide a
mechanical device for augmenting or even totally replacing the blood
pumping action of a damaged or diseased mammalian heart."
[0406] "U.S. Pat. No. 3,842,440 to Karlson discloses an
implantable linear motor prosthetic heart and control system containing
a pump having a piston-like member which is reciprocal within a
magnetic field. The piston-like member includes a compressible chamber
in the prosthetic heart which communicates with the vein or aorta."
[0407] U.S. Pat. No. 5,702,430 also discloses that "U.S. Pat.
Nos. 3,911,897 and 3,911,898 to Leachman, Jr. disclose heart assist
devices controlled in the normal mode of operation to copulsate and
counterpulsate with the heart, respectively, and produce a blood flow
waveform corresponding to the blood flow waveform of the heart being
assisted. The heart assist device is a pump connected serially between
the discharge of a heart ventricle and the vascular system. The pump
may be connected to the aorta between the left ventricle discharge
immediately adjacent the aortic valve and a ligation in the aorta a
short distance from the discharge. This pump has coaxially aligned
cylindrical inlet and discharge pumping chambers of the same diameter
and a reciprocating piston in one chamber fixedly connected with a
reciprocating piston of the other chamber. The piston pump further
includes a passageway leading between the inlet and discharge chambers
and a check valve in the passageway preventing flow from the discharge
chamber into the inlet chamber. There is no flow through the movable
element of the piston."
[0408] U.S. Pat. No. 5,702,430 also discloses that "U.S. Pat.
No. 4,102,610 to Taboada et al. discloses a magnetically operated
constant volume reciprocating pump which can be used as a surgically
implantable heart pump or assist. The reciprocating member is a piston
carrying a tilting-disk type check valve positioned in a cylinder.
While a tilting disk valve results in less turbulence and applied shear
to surrounding fluid than a squeezed flexible sack or rotating
impeller, the shear applied may still be sufficiently excessive so as
to cause damage to red blood cells."
[0409] U.S. Pat. No. 5,702,430 also discloses that "U.S. Pat.
Nos. 4,210,409 and 4,375,941 to Child disclose a pump used to assist
pumping action of the heart having a piston movable in a cylindrical
casing in response to magnetic forces. A tilting-disk type check valve
carried by the piston provides for flow of fluid into the cylindrical
casing and restricts reverse flow. A plurality of longitudinal vanes
integral with the inner wall of the cylindrical casing allow for
limited reverse movement of blood around the piston which may result in
compression and additional shearing of red blood cells. A second fixed
valve is present in the inlet of the valve to prevent reversal of flow
during piston reversal."
[0410] U.S. Pat. No. 5,702,430 also discloses that "U.S. Pat.
No. 4,965,864 to Roth discloses a linear motor using multiple coils and
a reciprocating element containing permanent magnets which is driven by
microprocessor-controlled power semiconductors. A plurality of
permanent magnets is mounted on the reciprocating member. This design
does not provide for self-synchronization of the linear motor in the
event the stroke of the linear motor is greater than twice the pole
pitch on the reciprocating element. During start-up of the motor, or if
magnetic coupling is lost, the reciprocating element may slip from its
synchronous position by any multiple of two times the pole pitch. As a
result, a sensing arrangement must be included in the design to detect
the position of the piston so that the controller will not drive it
into one end of the closed cylinder. In addition, this design having
equal pole pitch and slot pitch results in a "jumpy" motion of the
reciprocating element along its stroke."
[0411] U.S. Pat. No. 5,702,430 also discloses that "In addition
to the piston position sensing arrangement discussed above, the Roth
design may also include a temperature sensor and a pressure sensor as
well as control circuitry responsive to the sensors to produce the
intended piston motion. For applications such as implantable blood
pumps where replacement of failed or malfunctioning sensors requires
open heart surgery, it is unacceptable to have a linear motor drive and
controller that relies on any such sensors. In addition, the Roth
controller circuit uses only NPN transistors thereby restricting
current flow to the motor windings to one direction only.`
[0412] `U.S. Pat. No. 4,541,787 to Delong describes a pump
configuration wherein a piston containing a permanent magnet is driven
in a reciprocating fashion along the length of a cylinder by energizing
a sequence of coils positioned around the outside of the cylinder.
However, the coil and control system configurations disclosed only
allow current to flow through one individual winding at a time. This
does not make effective use of the magnetic flux produced by each pole
of the magnet in the piston. To maximize force applied to the piston in
a given direction, current must flow in one direction in the coils
surrounding the vicinity of the north pole of the permanent magnet
while current flows in the opposite direction in the coils surrounding
the vicinity of the south pole of the permanent magnet. Further, during
starting of the pump disclosed by Delong, if the magnetic piston is not
in the vicinity of the first coil energized, the sequence of coils that
are subsequently energized will ultimately approach and repel the
magnetic piston toward one end of the closed cylinder. Consequently,
the piston must be driven into the end of the closed cylinder before
the magnetic poles created by the external coils can become coupled
with the poles of the magnetic piston in attraction."
[0413] U.S. Pat. No. 5,702,430 also discloses that "U.S. Pat.
No. 4,610,658 to Buchwald et al. discloses an implantable fluid
displacement peritoneovenous shunt system. The system comprises a
magnetically driven pump having a spool piston fitted with a disc flap
valve."
[0414] U.S. Pat. No. 5,702,430 also discloses that "U.S. Pat.
No. 5,089,017 to Young et al. discloses a drive system for artificial
hearts and left ventricular assist devices comprising one or more
implantable pumps driven by external electromagnets. The pump utilizes
working fluid, such as sulfur hexafluoride to apply pneumatic pressure
to increase blood pressure and flow rate."
[0415] U.S. Pat. No. 5,743,854 discloses a device for inducing
and localizing epileptiform activity that is comprised of a direct
current (DC) magnetic field generator, a DC power source, and sensors
adapted to be coupled to a patient's head; this direct current magnetic
field generator may be used in conjunction with the anti-mitotic
compound of this invention and/or an auxiliary device and/or tubulin
and/or microtubules. In one embodiment of the invention, described in
claim 7, the sensors " . . . comprise Foramen Ovale electrodes adapted
to be implanted to sense evoked and natural epileptic firings."
[0416] U.S. Pat. No. 5,803,897 discloses a penile prosthesis
system comprised of an implantable pressurized chamber, a reservoir, a
rotary pump, a magnetically responsive rotor, and a rotary magnetic
field generator. Claim 1 of this patent describes: "A penile prosthesis
system comprising: at least one pressurizable chamber including a fluid
port, said chamber adapted to be located within the penis of a patient
for tending to make the penis rigid in response to fluid pressure
within said chamber; a fluid reservoir; a rotary pump adapted to be
implanted within the body of a user, said rotary pump being coupled to
said reservoir and to said chamber, said rotary pump including a
magnetically responsive rotor adapted for rotation in the presence of a
rotating magnetic field, and an impeller for tending to pump fluid at
least from said reservoir to said chamber under the impetus of fluid
pressure, to thereby pressurize said chamber in response to operation
of said pump; and a rotary magnetic field generator for generating a
rotating magnetic field, for, when placed adjacent to the skin of said
user at a location near said rotary pump, rotating said magnetically
responsive rotor in response to said rotating magnetic field, to
thereby tend to pressurize said chamber and to render the penis rigid;
controllable valve means operable in response to motion of said rotor
of said rotary pump, for tending to prevent depressurization of said
chamber when said rotating magnetic field no longer acts on said rotor,
said controllable valve means comprising a unidirectional check valve
located in the fluid path extending between said rotary pump and said
port of said chamber." Such fluid pumping means may be used to
facilitate the delivery of the anti-mitotic compound of this invention.
[0417] U.S. Pat. No. 5,810,015 describes an implantable power
supply that can convert non-electrical energy (such as mechanical,
chemical, thermal, or nuclear energy) into electrical energy; the
entire disclosure of this United States patent is hereby incorporated
by reference into this specification. This power supply may be used to
supply energy to the anti-mitotic compound of this invention and/or to
tubulin and/or to microtubules.
[0418] In column 1 of U.S. Pat. No. 5,810,015, a discussion of
"prior art" rechargeable power supplies is presented. It is disclosed
in this column 1 that: "Modern medical science employs numerous
electrically powered devices which are implanted in a living body. For
example, such devices may be employed to deliver medications, to
support blood circulation as in a cardiac pacemaker or artificial
heart, and the like. Many implantable devices contain batteries which
may be rechargeable by transcutaneous induction of electromagnetic
fields in implanted coils connected to the batteries. Transcutaneous
inductive recharging of batteries in implanted devices is disclosed for
example in U.S. Pat. Nos. 3,923,060; 4,082,097; 4,143,661; 4,665,896;
5,279,292; 5,314,453; 5,372,605, and many others."
[0419] U.S. Pat. No. 5,810,015 also discloses that: "Other
methods for recharging implanted batteries have also been attempted.
For example, U.S. Pat. No. 4,432,363 discloses use of light or heat to
power a solar battery within an implanted device. U.S. Pat. No.
4,661,107 discloses recharging of a pacemaker battery using mechanical
energy created by motion of an implanted heart valve." These "other
methods" may also be used in the process of this invention.
[0420] U.S. Pat. No. 5,810,015 also discloses that: "A number
of implanted devices have been powered without batteries. U.S. Pat.
Nos. 3,486,506 and 3,554,199 disclose generation of electric pulses in
an implanted device by movement of a rotor in response to the patient's
heartbeat. U.S. Pat. No. 3,563,245 discloses a miniaturized power
supply unit which employs mechanical energy of heart muscle
contractions to generate electrical energy for a pacemaker. U.S. Pat.
No. 3,456,134 discloses a piezoelectric converter for electronic
implants in which a piezoelectric crystal is in the form of a weighted
cantilever beam capable of responding to body movement to generate
electric pulses. U.S. Pat. No. 3,659,615 also discloses a piezoelectric
converter which reacts to muscular movement in the area of
implantation. U.S. Pat. No. 4,453,537 discloses a pressure actuated
artificial heart powered by a second implanted device attached to a
body muscle which in turn is stimulated by an electric signal generated
by a pacemaker." These "other devices" may also be used in the process
of this invention.
[0421] U.S. Pat. No. 5,810,015 also discloses that: "In spite
of all these efforts, a need remains for efficient generation of energy
to supply electrically powered implanted devices." The solution
provided by U.S. Pat. No. 5,80,015 is described in claim 1 thereof,
which describes: "An implantable power supply apparatus for supplying
electrical energy to an electrically powered device, comprising: a
power supply unit including: a transcutaneously, invasively
rechargeable non-electrical energy storage device (NESD); an electrical
energy storage device (EESD); and an energy converter coupling said
NESD and said EESD, said converter including means for converting
non-electrical energy stored in said NESD to electrical energy and for
transferring said electrical energy to said EESD, thereby storing said
electrical energy in said EESD."
[0422] An implantable ultrasound communication system is
disclosed in U.S. Pat. No. 5,861,018, the entire disclosure of which is
hereby incorporated by reference into this specification. As is
disclosed in the abstract of this patent, there is disclosed in such
patent "A system for communicating through the skin of a patient, the
system including an internal communication device implanted inside the
body of a patient and an external communication device. The external
communication device includes an external transmitter which transmits a
carrier signal into the body of the patient during communication from
the internal communication device to the external communication device.
The internal communication device includes an internal modulator which
modulates the carrier signal with information by selectively reflecting
the carrier signal or not reflecting the carrier signal. The external
communication device demodulates the carrier signal by detecting when
the carrier signal is reflected and when the carrier signal is not
reflected through the skin of the patient. When the reflected carrier
signal is detected, it is interpreted as data of a first state, and
when the reelected carrier signal is not detected, it is interpreted as
data of a second state. Accordingly, the internal communication device
consumes relatively little power because the carrier signal used to
carry the information is derived from the external communication
device. Further, transfer of data is also very efficient because the
period needed to modulate information of either the first state or the
second state onto the carrier signal is the same. In one embodiment,
the carrier signal operates in the ultrasound frequency range."
[0423] U.S. Pat. No. 5,861,019, the entire disclosure of which
is hereby incorporated by reference into this specification, discloses
a telemetry system for communications between an external programmer
and an implantable medical device. Claim 1 of this patent describes: "A
telemetry system for communications between an external programmer and
an implantable medical device, comprising: the external programmer
comprising an external telemetry antenna and an external transceiver
for receiving uplink telemetry transmissions and transmitting downlink
telemetry transmission through the external telemetry antenna; the
implantable medical device comprising an implantable medical device
housing, an implantable telemetry antenna and an implantable
transceiver for receiving downlink transmissions and for transmitting
uplink telemetry transmission through the implantable telemetry
antenna, the implantable medical device housing being formed of a
conductive metal and having an exterior housing surface and an interior
housing surface; the implantable medical device housing being formed
with a housing recess extending inwardly from the exterior housing
surface to a predetermined housing recess depth in the predetermined
substrate area of the exterior housing surface for receiving the
dielectric substrate therein; wherein the implantable telemetry antenna
is a conformal microstrip antenna formed as part of the implantable
medical device housing, the microstrip antenna having electrically
conductive ground plane and radiator patch layers separated by a
dielectric substrate, layer the conductive radiator patch layer having
a predetermined thickness and predetermined radiator patch layer
dimensions, the patch layer being formed upon one side of the
dielectric substrate layer."
[0424] "An extensive description of the historical development
of uplink and downlink telemetry transmission formats" is set forth at
columns 2 through 5 of U.S. Pat. No. 5,861,019; such telemetry
transmission formats may be used in conjunction with the anti-mitotic
compound of this invention. As is disclosed in these columns: "An
extensive description of the historical development of uplink and
downlink telemetry transmission formats and is set forth in the
above-referenced '851 and '963 applications and in the following series
of commonly assigned patents all of which are incorporated herein by
reference in their entireties. Commonly assigned U.S. Pat. No.
5,127,404 to Grevious et al. sets forth an improved method of frame
based, pulse position modulated (PPM) of data particularly for uplink
telemetry. The frame-based PPM telemetry format increases bandwidth
well above simple PIM or pulse width modulation (PWM) binary bit stream
transmissions and thereby conserves energy of the implanted medical
device. Commonly assigned U.S. Pat. No. 5,168,871 to Grevious et al.
sets forth an improvement in the telemetry system of the '404 patent
for detecting uplink telemetry RF pulse bursts that are corrupted in a
noisy environment. Commonly assigned U.S. Pat. No. 5,292,343 to
Blanchette et al. sets forth a further improvement in the telemetry
system of the '404 patent employing a hand shake protocol for
maintaining the communications link between the external programmer and
the implanted medical device despite instability in holding the
programmer RF head steady during the transmission. Commonly assigned
U.S. Pat. No. 5,324,315 to Grevious sets forth an improvement in the
uplink telemetry system of the '404 patent for providing feedback to
the programmer to aid in optimally positioning the programmer RF head
over the implanted medical device. Commonly assigned U.S. Pat. No.
5,117,825 to Grevious sets forth a further improvement in the
programmer RF head for regulating the output level of the magnetic H
field of the RF head telemetry antenna using a signal induced in a
sense coil in a feedback loop to control gain of an amplifier driving
the RF head telemetry antenna. Commonly assigned U.S. Pat. No.
5,562,714 to Grevious sets forth a further solution to the regulation
of the output level of the magnetic H field generated by the RF head
telemetry antenna using the sense coil current to directly load the H
field. Commonly assigned U.S. Pat. No. 5,354,319 to Wybomey et al. sets
forth a number of further improvements in the frame based telemetry
system of the '404 patent. Many of these improvements are incorporated
into MEDTRONIC.RTM. Model 9760, 9766 and 9790 programmers. These
improvements and the improvements described in the above-referenced
pending patent applications are directed in general to increasing the
data transmission rate, decreasing current consumption of the battery
power source of the implantable medical device, and increasing
reliability of uplink and downlink telemetry transmissions."
[0425] U.S. Pat. No. 5,810,015 also discloses that: "The
current MEDTRONIC.RTM. telemetry system employing the 175 kHz carrier
frequency limits the upper data transfer rate, depending on bandwidth
and the prevailing signal-to-noise ratio. Using a ferrite core, wire
coil, RF telemetry antenna results in: (1) a very low radiation
efficiency because of feed impedance mismatch and ohmic losses; 2) a
radiation intensity attenuated proportionally to at least the fourth
power of distance (in contrast to other radiation systems which have
radiation intensity attenuated proportionally to square of distance);
and 3) good noise immunity because of the required close distance
between and coupling of the receiver and transmitter RF telemetry
antenna fields."
[0426] U.S. Pat. No. 5,810,015 also discloses that "These
characteristics require that the implantable medical device be
implanted just under the patient's skin and preferably oriented with
the RF telemetry antenna closest to the patient's skin. To ensure that
the data transfer is reliable, it is necessary for the patient to
remain still and for the medical professional to steadily hold the RF
programmer head against the patient's skin over the implanted medical
device for the duration of the transmission. If the telemetry
transmission takes a relatively long number of seconds, there is a
chance that the programmer head will not be held steady. If the uplink
telemetry transmission link is interrupted by a gross movement, it is
necessary to restart and repeat the uplink telemetry transmission. Many
of the above-incorporated, commonly assigned, patents address these
problems."
[0427] U.S. Pat. No. 5,810,015 also discloses that "The ferrite
core, wire coil, RF telemetry antenna is not bio-compatible, and
therefore it must be placed inside the medical device hermetically
sealed housing. The typically conductive medical device housing
adversely attenuates the radiated RF field and limits the data transfer
distance between the programmer head and the implanted medical device
RF telemetry antennas to a few inches."
[0428] U.S. Pat. No. 5,810,015 also discloses that "In U.S.
Pat. No. 4,785,827 to Fischer, 4,991,582 to Byers et al., and commonly
assigned 5,470,345 to Hassler et al. (all incorporated herein by
reference in their entireties), the metal can typically used as the
hermetically sealed housing of the implantable medical device is
replaced by a hermetically sealed ceramic container. The wire coil
antenna is still placed inside the container, but the magnetic H field
is less attenuated. It is still necessary to maintain the implanted
medical device and the external programming head in relatively close
proximity to ensure that the H field coupling is maintained between the
respective RF telemetry antennas."
[0429] U.S. Pat. No. 5,810,015 also discloses that: "Attempts
have been made to replace the ferrite core, wire coil, RF telemetry
antenna in the implantable medical device with an antenna that can be
located outside the hermetically sealed enclosure. For example, a
relatively large air core RF telemetry antenna has been embedded into
the thermoplastic header material of the MEDTRONIC.RTM. Prometheus
programmable IPG. It is also suggested that the RF telemetry antenna
may be located in the IPG header in U.S. Pat. No. 5,342,408. The header
area and volume is relatively limited, and body fluid may infiltrate
the header material and the RF telemetry antenna."
[0430] U.S. Pat. No. 5,810,015 also discloses that: "In U.S.
Pat. Nos. 5,058,581 and 5,562,713 to Silvian, incorporated herein by
reference in their entireties, it is proposed that the elongated wire
conductor of one or more medical lead extending away from the implanted
medical device be employed as an RF telemetry antenna. In the
particular examples, the medical lead is a cardiac lead particularly
used to deliver energy to the heart generated by a pulse generator
circuit and to conduct electrical heart signals to a sense amplifier. A
modest increase in the data transmission rate to about 8 Kb/s is
alleged in the '581 and '713 patents using an RF frequency of 10-300
MHz. In these cases, the conductor wire of the medical lead can operate
as a far field radiator to a more remotely located programmer RF
telemetry antenna. Consequently, it is not necessary to maintain a
close spacing between the programmer RF telemetry antenna and the
implanted cardiac lead antenna or for the patient to stay as still as
possible during the telemetry transmission."
[0431] U.S. Pat. No. 5,810,015 also discloses that: "However,
using the medical lead conductor as the RF telemetry antenna has
several disadvantages. The radiating field is maintained by current
flowing in the lead conductor, and the use of the medical lead
conductor during the RF telemetry transmission may conflict with
sensing and stimulation operations. RF radiation losses are high
because the human body medium is lossy at higher RF frequencies. The
elongated lead wire RF telemetry antenna has directional radiation
nulls that depend on the direction that the medical lead extends, which
varies from patient to patient. These considerations both contribute to
the requirement that uplink telemetry transmission energy be set
artificially high to ensure that the radiated RF energy during the RF
uplink telemetry can be detected at the programmer RF telemetry
antenna. Moreover, not all implantable medical devices have lead
conductor wires extending from the device."
[0432] U.S. Pat. No. 5,810,015 also discloses that: "A further
U.S. Pat. No. 4,681,111 to Silvian, incorporated herein by reference in
its entirety, suggests the use of a stub antenna associated with the
header as the implantable medical device RF telemetry antenna for high
carrier frequencies of up to 200 MHz and employing phase shift keying
(PSK) modulation. The elimination of the need for a VCO and a bit rate
on the order of 2-5% of the carrier frequency or 3.3-10 times the
conventional bit rate are alleged."
[0433] U.S. Pat. No. 5,810,015 also discloses that: "At
present, a wide variety of implanted medical devices are commercially
released or proposed for clinical implantation. Such medical devices
include implantable cardiac pacemakers as well as implantable
cardioverter-defibrillators, pacemaker-cardioverter-defibrillators,
drug delivery pumps, cardiomyostimulators, cardiac and other
physiologic monitors, nerve and muscle stimulators, deep brain
stimulators, cochlear implants, artificial hearts, etc. As the
technology advances, implantable medical devices become ever more
complex in possible programmable operating modes, menus of available
operating parameters, and capabilities of monitoring increasing
varieties of physiologic conditions and electrical signals which place
ever increasing demands on the programming system."
[0434] U.S. Pat. No. 5,810,015 also discloses that: "It remains
desirable to minimize the time spent in uplink telemetry and downlink
transmissions both to reduce the likelihood that the telemetry link may
be broken and to reduce current consumption."
[0435] "Moreover, it is desirable to eliminate the need to hold
the programmer RF telemetry antenna still and in proximity with the
implantable medical device RF telemetry antenna for the duration of the
telemetry transmission. As will become apparent from the following, the
present invention satisfies these needs."
[0436] The solution to this problem is presented, e.g., in
claim 1 of U.S. Pat. No. 5,861,019. This claim describes "A telemetry
system for communications between an external programmer and an
implantable medical device, comprising: the external programmer
comprising an external telemetry antenna and an external transceiver
for receiving uplink telemetry transmissions and transmitting downlink
telemetry transmission through the external telemetry antenna; the
implantable medical device comprising an implantable medical device
housing, an implantable telemetry antenna and an implantable
transceiver for receiving downlink transmissions and for transmitting
uplink telemetry transmission through the implantable telemetry
antenna, the implantable medical device housing being formed of a
conductive metal and having an exterior housing surface and an interior
housing surface; the implantable medical device housing being formed
with a housing recess extending inwardly from the exterior housing
surface to a predetermined housing recess depth in the predetermined
substrate area of the exterior housing surface for receiving the
dielectric substrate therein; wherein the implantable telemetry antenna
is a conformal microstrip antenna formed as part of the implantable
medical device housing, the microstrip antenna having electrically
conductive ground plane and radiator patch layers separated by a
dielectric substrate, layer the conductive radiator patch layer having
a predetermined thickness and predetermined radiator patch layer
dimensions, the patch layer being formed upon one side of the
dielectric substrate layer."
[0437] U.S. Pat. No. 5,945,762, the entire disclosure of which
is hereby incorporated by reference into this specification, discloses
an external transmitter adapted to magnetically excite an implanted
receiver coil; such an implanted receiver coil may be disposed near,
e.g., the anti-mitotic compound of this invention and/or other devices
and/or tubulin and/or microtubules. Claim 1 of this patent describes
"An external transmitter adapted for magnetically exciting an implanted
receiver coil, causing an electrical current to flow in the implanted
receiver coil, comprising: (a) a support; (b) a magnetic field
generator that is mounted to the support; and (c) a prime mover that is
drivingly coupled to an element of the magnetic field generator to
cause said element of the magnetic field generator to reciprocate, in a
reciprocal motion, said reciprocal motion of said element of the
magnetic field generator producing a varying magnetic field that is
adapted to induce an electrical current to flow in the implanted
receiver coil."
[0438] U.S. Pat. No. 5,954,758, the entire disclosure of which
is hereby incorporated by reference into this specification, claims an
implantable electrical stimulator comprised of an implantable radio
frequency receiving coil, an implantable power supply, an implantable
input signal generator, an implantable decoder, and an implantable
electrical stimulator. Claim 1 of this patent describes "A system for
transcutaneously telemetering position signals out of a human body and
for controlling a functional electrical stimulator implanted in said
human body, said system comprising: an implantable radio frequency
receiving coil for receiving a transcutaneous radio frequency signal;
an implantable power supply connected to said radio frequency receiving
coil, said power supply converting received transcutaneous radio
frequency signals into electromotive power; an implantable input signal
generator electrically powered by said implantable power supply for
generating at least one analog input movement signal to indicate
voluntary bodily movement along an axis; an implantable encoder having
an input operatively connected with said implantable input signal
generator for encoding said movement signal into output data in a
preselected data format; an impedance altering means connected with
said encoder and said implantable radio frequency signal receiving coil
to selectively change an impedance of said implantable radio frequency
signal receiving coil; an external radio frequency signal transmit coil
inductively coupled with said implantable radio frequency signal
receiving coil, such that impedance changes in said implantable radio
frequency signal receiving coil are sensed by said external radio
frequency signal transmit coil to establish a sensed modulated movement
signal in said external transmit coil; an external control system
electrically connected to said external radio frequency transmit coil
for monitoring said sensed modulated movement signal in said external
radio frequency transmit coil, said external control system including:
a demodulator for recovering the output data of said encoder from the
sensed modulated movement signal of said external transmit coil, a
pulse width algorithm means for applying a preselected pulse width
algorithm to the recovered output data to derive a first pulse width,
an amplitude algorithm means for applying an amplitude algorithm to the
recovered output data to derive a first amplitude therefrom, an
interpulse interval algorithm means for applying an interpulse
algorithm to the recovered output data to derive a first interpulse
interval therefrom; and, a stimulation pulse train signal generator for
generating a stimulus pulse train signal which has the first pulse
width and the first pulse amplitude; an implantable functional
electrical stimulator for receiving said stimulation pulse train signal
from said stimulation pulse train signal generator and generating
stimulation pulses with the first pulse width, the first pulse
amplitude, and separated by the first interpulse interval; and, at
least one electrode operatively connected with the functional
electrical stimulator for applying said stimulation pulses to muscle
tissue of said human body."
[0439] U.S. Pat. No. 6,006,133, the entire disclosure of which
is hereby incorporated by reference into this specification, describes
an implantable medical device comprised of a hermetically sealed
housing." Such a hermetically sealed housing may be used to contain,
e.g., the anti-mitotic compound of this invention.
[0440] U.S. Pat. No. 6,083,166, the entire disclosure of which
is hereby incorporated by reference into this specification, discloses
an ultrasound transmitter for use with a surgical device. This
ultrasound transmitter may be used, e.g., to affect the anti-mitotic
compound of this invention and/or tubulin and/or microtubules.
[0441] U.S. Pat. No. 6,152,882, the entire disclosure of which
is hereby incorporated by reference into this specification, discloses
an implantable electroporation unit, an implantable probe electrode, an
implantable reference electrode, and an amplifier unit; this
electroporation unit may be used to treat, e.g., cancer cells in
conjunction with the anti-mitotic compound of this invention. Claim 35
of this patent describes: "Apparatus for measurement of monophasic
action potentials from an excitable tissue including a plurality of
cells, the apparatus comprising: at least one probe electrode placeable
adjacent to or in contact with a portion of said excitable tissue; at
least one reference electrode placeable proximate said at least one
probe electrode; an electroporating unit electrically connected to said
at least one probe electrode and said at least one reference electrode
for controllably applying to at least some of said cells subjacent said
at least one probe electrode electrical current pulses suitable for
causing electroporation of cell membranes of said at least some of said
cells; and an amplifier unit electrically connected to said at least
one probe electrode and to said at least one reference electrode for
providing an output signal representing the potential difference
between said probe electrode and said reference electrode"
[0442] U.S. Pat. No. 6,169,925, the entire disclosure of which
is hereby incorporated by reference into this specification, describes
a transceiver for use in communication with an implantable medical
device. Claim 1 of this patent describes: "An external device for use
in communication with an implantable medical device, comprising: a
device controller; a housing; an antenna array mounted to the housing;
an RF transceiver operating at defined frequency, coupled to the
antenna array; means for encoding signals to be transmitted to the
implantable device, coupled to an input of the transceiver; means for
decoding signals received from the implantable device, coupled to an
output of the transceiver; and means for displaying the decoded signals
received from the implantable device; wherein the antenna array
comprises two antennas spaced a fraction of the wavelength of the
defined frequency from one another, each antenna comprising two antenna
elements mounted to the housing and located orthogonal to one another;
and wherein the device controller includes means for selecting which of
the two antennas is coupled to the transceiver." Such a transceiver, in
combination with an implantable sensor, may be used in conjunction with
the anti-mitotic compound of this invention and/or tubulin and/or
microtubules and/or one or more other implanted devices.
[0443] U.S. Pat. No. 6,185,452, the entire disclosure of which
is hereby incorporated by reference into this specification, claims a
device for stimulating internal tissue, wherein such device is
comprised of: "a sealed elongate housing configured for implantation in
said patient's body, said housing having an axial dimension of less
than 60 mm and a lateral dimension of less than 6 mm; power consuming
circuitry carried by said housing including at least one electrode
extending externally of said housing, said power consuming circuitry
including a capacitor and pulse control circuitry for controlling (1)
the charging of said capacitor and (2) the discharging of said
capacitor to produce a current pulse through said electrode; a battery
disposed in said housing electrically connected to said power consuming
circuitry for powering said pulse control circuitry and charging said
capacitor, said battery having a capacity of at least one
microwatt-hour; an internal coil and a charging circuit disposed in
said housing for supplying a charging current to said battery; an
external coil adapted to be mounted outside of said patient's body; and
means for energizing said external coil to generate an alternating
magnetic field for supplying energy to said charging circuit via said
internal coil." Such capacitative discharge energy may be used to
affect either the anti-mitotic compound of this invention and/or
tubulin and/or microtubules.
[0444] U.S. Pat. No. 6,235,024, the entire disclosure of which
is hereby incorporated by reference into this specification, discloses
an implantable high frequency energy generator; such high-frequency
energy may be used to affect either the anti-mitotic compound of this
invention, tubulin, microtubules, and/or one or more other implanted
devices. Claim 1 of this patent describes: "A catheter system
comprising: an elongate catheter tubing having a distal section, a
distal end, a proximal end, and at least one lumen extending between
the distal end and the proximal end; a handle attached to the proximal
end of said elongate catheter tubing, wherein the handle has a cavity;
an ablation element mounted at the distal section of the elongate
catheter tubing, the ablation element having a wall with an outer
surface and an inner surface, wherein the outer surface is covered with
an outer member made of a first electrically conductive material and
the inner surface is covered with an inner member made of a second
electrically conductive material, and wherein the wall comprises an
ultrasound transducer; an electrical conducting means having a first
and a second electrical wires, wherein the first electrical wire is
coupled to the outer member and the second electrical wire is coupled
to the inner member of the ablation element; and a high frequency
energy generator means for providing a radiofrequency energy to the
ablation element through a first electrical wire of the electrical
conducting means."
[0445] An implantable light-generating apparatus is described
in claim 16 of U.S. Pat. No. 6,363,279, the entire disclosure of which
is hereby incorporated by reference into this specification. In one
embodiment, the compound of this invention is comprised of a photolytic
linker which is caused to disassociate upon being exposed to specified
light energy. As is disclosed in such claim 16, this patent provides a
"Heart control apparatus, comprising circuitry for generating a
non-excitatory stimulus, and stimulus application devices for applying
to a heart or to a portion thereof said non-excitatory stimulus,
wherein the circuitry for generating a non-excitatory stimulus
generates a stimulus which is unable to generate a propagating action
potential and wherein said circuitry comprises a light-generating
apparatus for generating light."
[0446] An implantable ultrasound probe is described in claim 1
of U.S. Pat. No. 6,421,565, the entire disclosure of which is hereby
incorporated by reference into this specification. Such ultrasound may
be used, e.g., to treat the microtubules of cancer cells; and this
treatment may be combined, e.g., with the anti-mitotic compounds of
this invention.
[0447] Claim 1 of U.S. Pat. No. 6,421,565 describes: "An
implantable cardiac monitoring device comprising: an A-mode ultrasound
probe adapted for implantation in a right ventricle of a heart, said
ultrasound probe emitting an ultrasound signal and receiving at least
one echo of said ultrasound signal from at least one cardiac segment of
the left ventricle; a unit connected to said ultrasound probe for
identifying a time difference between emission of said ultrasound
signal and reception of said echo and, from said time difference,
determining a position of said cardiac segment, said cardiac segment
having a position which, at least when reflecting said ultrasound
signal, is correlated to cardiac performance, and said unit deriving an
indication of said cardiac performance from said position of said
cardiac segment."
[0448] An implantable stent that contains a tube and several
optical emitters located on the inner surface of the tube is disclosed
in U.S. Pat. No. 6,488,704, the entire disclosure of which is hereby
incorporated by reference into this specification. One may use one or
more of the implantable devices described in U.S. Pat. No. 6,488,704
together with the anti-mitotic compound of this invention and/or
tubulin and/or microtubules and/or another in vivo device.
[0449] Claim 1 of U.S. Pat. No. 6,488,704 describes "1. An
implantable stent which comprises: (a) a tube comprising an inner
surface and an outer surface, and (b) a multiplicity of optical
radiation emitting means adapted to emit radiation with a wavelength
from about 30 nanometers to about 30 millimeters, and a multiplicity of
optical radiation detecting means adapted to detect radiation with a
wavelength of from about 30 nanometers to about 30 millimeters, wherein
said optical radiation emitting means and said optical radiation
detecting means are disposed on the inside surface of said tube."
[0450] Many other implantable devices and configurations are
described in the claims of U.S. Pat. No. 6,488,704. These devices and
configurations may be used in conjunction with the anti-mitotic
compound of this invention, and/or tubulin, and/or microtubules, and/or
other auxiliary, implanted device.
[0451] Thus, e.g., claim 2 of U.S. Pat. No. 6,488,704 discloses
that the " . . . implantable stent is comprised of a flexible casing
with an inner surface and an outer surface." Claim 3 of such patent
discloses that the case may be " . . . comprised of fluoropolymer."
Claim 4 of such patent discloses that the casing may be " . . .
optically impermeable."
[0452] Thus, e.g., claim 10 of U.S. Pat. No. 6,488,704
discloses an embodiment in which an implantable stent contains " . . .
telemetry means for transmitting a signal to a receiver located
external to said implantable stent." The telemetry means may be adapted
to receive " . . . a signal from a transmitter located external to said
implantable stent (see claim 11); and such signal may be a
radio-frequency signal (see claims 12 and 13). The implantable stent
may also comprise " . . . telemetry means for transmitting a signal to
a receiver located external to said implantable stent" (see claim 22),
and/or " . . . telemetry means for receiving a signal from a
transmitter located external to said implantable stent" (see claim 23),
and/or " . . . a controller operatively connected to said means for
transmitting a signal to said receiver, and operatively connected to
said means for receiving a signal from said transmitter" (see claim
24).
[0453] Thus, e.g., claim 14 of U.S. Pat. No. 6,488,704
describes an implantable stent that contains a waveguide array. The
waveguide array may contain " . . . a flexible optical waveguide
device" (see claim 15), and/or " . . . means for transmitting optical
energy in a specified configuration" (see claim 16), and/or " . . . a
waveguide interface for receiving said optical energy transmitted in
said specified configuration by said waveguide array" (see claim 17),
and/or " . . . means for filtering specified optical frequencies" (see
claim 18). The implantable stent may be comprised of " . . . means for
receiving optical energy from said waveguide array" (see claim 19),
and/or " . . . means for processing said optical energy received from
waveguide array" (see claim 20). The implantable stent may comprise " .
. . means for processing said radiation emitted by said optical
radiation emitting means adapted with a wavelength from about 30
nanometers to about 30 millimeters" (see claim 21).
[0454] The implantable stent of U.S. Pat. No. 6,488,404 may be
comprised of implantable laser devices. Thus, e.g., and referring again
to U.S. Pat. No. 6,488,704, the implantable stent may be comprised of "
. . . a multiplicity of vertical cavity surface emitting lasers and
photodetectors arranged in a monolithic configuration" (see claim 27),
wherein " . . . said monolithic configuration further comprises a
multiplicity of optical drivers operatively connected to said vertical
cavity surface emitting lasers" (see claim 28) and/or wherein " . . .
said vertical cavity surface emitting lasers each comprise a
multiplicity of distributed Bragg reflector layers" (see claim 29),
and/or wherein " . . . each of said photodetectors comprises a
multiplicity of distributed Bragg reflector layers" (see claim 30),
and/or wherein " . . . each of said vertical cavity surface emitting
lasers is comprised of an emission layer disposed between a first
distributed Bragg reflector layer and a second distributed Bragg
reflector layer" (see claim 31), and/or wherein " . . . said emission
layer is comprised of a multiplicity of quantum well structures" (see
claim 32), and/or wherein " . . . each of said photodetectors is
comprised of an absorption layer disposed between a first distributed
Bragg reflector layer and a second distributed Bragg reflector layer"
(see claim 33), and/or wherein " . . . each of said vertical cavity
surface emitting lasers and photodetectors is disposed on a separate
semiconductor substrate" (see claim 34), and/or wherein " . . . said
semiconductor substrate comprises gallium arsenide." These devices may
advantageously be used in the process of this invention.
[0455] Referring again to U.S. Pat. No. 6,488,704, the entire
disclosure of which is hereby incorporated by reference into this
specification, the implantable stent may be comprised of an arithmetic
unit (see claim 37 of such patent), and such arithmetic unit may be " .
. . comprised of means for receiving signals from said optical
radiation detecting means" (see claim 38), and/or " . . . means for
calculating the concentration of components in an analyte disposed
within said implantable stent (see claim 39). In one embodiment, "said
means for calculating the concentration of components in said analyte
calculates concentrations of said components in said analyte based upon
optimum optical path lengths for different wavelengths and values of
transmitted light (see claim 40).
[0456] Referring again to U.S. Pat. No. 6,488,704, the
implantable stent may contain a power supply (see claim 41 thereof)
which may contain a battery (see claim 42) which, in one embodiment, is
a lithium-iodine battery (see claim 43).
[0457] U.S. Pat. No. 6,585,763, the entire disclosure of which
is hereby incorporated by reference into this specification, describes
in its claim 1 " . . . a vascular graft comprising: a biocompatible
material formed into a shape having a longitudinal axis to enclose a
lumen disposed along said longitudinal axis of said shape, said lumen
positioned to convey fluid through said vascular graft; a first
transducer coupled to a wall of said vascular graft; and an implantable
circuit for receiving electromagnetic signals, said implantable circuit
coupled to said first transducer, said first transducer configured to
receive a first energy from said circuit to emit a second energy having
one or more frequencies and power levels to alter said biological
activity of said medication in said localized area of said body
subsequent to implantation of said first transducer in said body near
said localized area." One may use the means for " . . . altering said
biological activity of said medication . . . " in the process of this
invention. The transducer may be selected from the group consisting of
" . . . an ultrasonic transducer, a plurality of light sources, an
electric field transducer, an electromagnetic transducer, and a
resistive heating transducer" (see claim 2), it may comprise a coil
(see claim 3), it may comprise " . . . a regular solid including
piezoelectric material, and wherein a first resonance frequency, being
of said one or more frequencies, is determined by a first dimension of
said regular solid and a second resonance frequency, being of said one
or more frequencies, is determined by a second dimension of said
regular solid and further including a first electrode coupled to said
regular solid and a second electrode coupled to said regular solid"
(see claim 4).
[0458] U.S. Pat. No. 6,605,089, the entire disclosure of which
is hereby incorporated by reference into this specification, discloses
an implantable bone growth promoting device. Claim 1 of this patent
describes "A device for placement into and between at least two
adjacent bone masses to promote bone growth therebetween, said device
comprising: an implant having opposed first and second surfaces for
placement between and-in contact with the adjacent bone masses, a
mid-longitudinal axis, and a hollow chamber between said first and
second surfaces, said hollow chamber being adapted to hold bone growth
promoting material, said hollow chamber being along at least a portion
of the mid-longitudinal axis of said implant, each of said first and
second surfaces having at least one opening in communication with said
hollow chamber into which bone from the adjacent bone masses grows; and
an energizer for energizing said implant, said energizer being sized
and configured to promote bone growth from adjacent bone mass to
adjacent bone mass through said first and second surfaces and through
at least a portion of said hollow chamber at the mid-longitudinal
axis." The implant may have a coil wrapped around it (see claim 6), a
portion of the coil may be " . . . in the form of an external thread on
at least a portion of said first and second surfaces of said implant"
(see claim 7), the "external thread" may be energized by the
"energizer" (claim 8) by conducting " . . . electromagnetic energy to
said interior space . . . " of the energizer (claim 9). One may use
such "energizer" in the process of this invention.
[0459] Referring again to U.S. Pat. No. 6,605,089, and to the
implant claimed therein, the implant may contain " . . . a power supply
delivering an electric charge" (see claim 14), and it may comprise " .
. . a first portion that is electrically conductive for delivering said
electrical charge to at least a portion of the adjacent bone masses and
said energizer delivers negative electrical charge to said first
portion of said implant" (see claim 15). Additionally, the implant may
also contain " . . . a controller for controlling the delivery of said
electric charge" that is disposed within the implant (see claim 18),
that " . . . includes one of a wave form generator and a voltage
generator" (see claim 19), and that " . . . provides for the delivery
of one of an alternating current, a direct current, and a sinusoidal
current" (see claim 21).
[0460] U.S. Pat. No. 6,641,520, the entire disclosure of which
is hereby incorporated by reference into this specification, discloses
a magnetic field generator for providing a static or direct current
magnetic field generator; the magnetic field generator described in
this patent may be used in conjunction the anti-mitotic compound and/or
tubulin and/or microtubules. In column 1 of this patent, some "prior
art" magnetic field generators were described; and they also may be so
used. It was stated in such column 1 that: "There has recently been an
increased interest in therapeutic application of magnetic fields. There
have also been earlier efforts of others in this area. The recent
efforts, as well as those earlier made, can be categorized into three
general types, based on the mechanism for generating and applying the
magnetic field. The first type was what could be generally referred to
as systemic applications. These were large, tubular mechanisms which
could accommodate a human body within them. A patient or recipient
could thus be subjected to magnetic therapy through their entire body.
These systems were large, cumbersome and relatively immobile. Examples
of this type of therapeutic systems included U.S. Pat. Nos. 1,418,903;
4,095,588; 5,084,003; 5,160,591; and 5,437,600. A second type of system
was that of magnetic therapeutic applicator systems in the form of
flexible panels, belts or collars, containing either electromagnets or
permanent magnets. These applicator systems could be placed on or about
portion of the recipient's body to allow application of the magnetic
therapy. Because of their close proximity to the recipient's body,
considerations limited the amount and time duration of application of
magnetic therapy. Examples of this type system were U.S. Pat. Nos.
4,757,804; 5,084,003 and 5,344,384. The third type of system was that
of a cylindrical or toroidal magnetic field generator, often small and
portable, into which a treatment recipient could place a limb to
receive electromagnetic therapy. Because of size and other limitations,
the magnetic field strength generated in this type system was usually
relatively low. Also, the magnetic field was a time varying one.
Electrical current applied to cause the magnetic field was time
varying, whether in the form of simple alternating current waveforms or
a waveform composed of a series of time-spaced pulses."
[0461] The magnetic field generator claimed in U.S. Pat. No.
6,641,520 comprised " . . . a magnetic field generating coil composed
of a wound wire coil generating the static magnetic field in response
to electrical power; a mounting member having the coil mounted thereon
and having an opening therethrough of a size to permit insertion of a
limb of the recipient in order to receive electromagnetic therapy from
the magnetic field coil; an electrical power supply furnishing power to
the magnetic field coil to cause the coil to generate a static
electromagnetic field within the opening of the mounting member for
application to the recipient's limb; a level control mechanism
providing a reference signal representing a specified electro-magnetic
field strength set point for regulating the power furnished to the
magnetic field coil; a field strength sensor detecting the static
electromagnetic field strength generated by the magnetic field coil and
forming a field strength signal representing the detected
electro-magnetic field strength in the opening in the mounting member;
a control signal generator receiving the field strength signal from the
field strength sensor and the reference signal from the level control
mechanism representing a specified electromagnetic field strength set
point; and the control signal generator forming a signal to regulate
the power flowing from the electrical power supply to the magnetic
field coil."
[0462] An implantable sensor is disclosed in U.S. Pat. No.
6,491,639, the entire disclosure of which is hereby incorporated by
reference into this specification; this sensor also may be used in
conjunction with the anti-mitotic compound of this invention, and/or
tubulin, and/or microtubules. Claim 1 of such patent describes: "An
implantable medical device including a sensor for use in detecting the
hemodynamic status of a patient comprising: a hermetic device housing
enclosing device electronics for receiving and processing data; and
said device housing including at least one recess and a sensor
positioned in said at least one recess." Claim 10 of such patent
describes "10. An implantable medical device including a hemodynamic
sensor for monitoring arterial pulse amplitude comprising: a device
housing; a transducer comprising a light source and a light detector
positioned exterior to said device housing responsive to variations in
arterial pulse amplitude; and wherein said light detector receives
light originating from said light source and reflected from arterial
vasculature of a patient and generates a signal which is indicative of
variations in the reflected light caused by the expansion and
contraction of said arterial vasculature. "Claim 14 of such patent
describes: "14. An implantable medical device including a hemodynamic
sensor for monitoring arterial pulse amplitude comprising: a device
housing; and an ultrasound transducer associated with said device
housing responsive to variations in arterial pulse amplitude." Claim 15
of such patent describes: "15. An implantable medical device including
a hemodynamic sensor for monitoring arterial pulse amplitude
comprising: a device housing; and a transducer associated with said
device housing responsive to variations in arterial pulse amplitude,
said device housing having at least one substantially planar face and
said transducer is positioned on said planar face." Claim 17 of such
patent describes " . . . an implantable pulse generator . . . `
[0463] U.S. Pat. No. 6,663,555, the entire disclosure of which
is incorporated by reference into this specification, also claims a
magnetic field generator; this magnetic field generator may be used in
conjunction with the anti-mitotic compound of this invention and/or
tubulin and/or microtubules. Claim 1 of this patent describes: "A
magnet keeper-shield assembly for housing a magnet, said magnet
keeper-shield assembly comprising: a keeper-shield comprising a
material substantially permeable to a magnetic flux; a cavity in the
keeper-shield, said cavity comprising an inner side wall and a base,
and said cavity being adapted to accept a magnet having a front and a
bottom face; an actuator extending through the base; a plurality of
springs extending through the base, said springs operative to exert a
force in a range from about 175 pounds to about 225 pounds on the
bottom face of the magnet in a retracted position, and wherein said
magnet produces at least about 118 gauss at a distance of about 10 cm
from the front face in the extended position and produces at most about
5 gauss at a distance less than or equal to about 22 cm from the front
face in the retracted position."
[0464] Published United States patent application
US2002/0182738 discloses an implantable flow cytometer; the entire
disclosure of this published United States patent application is hereby
incorporated by reference into this specification. Claim 1 of this
patent describes "A flow cytometer comprising means for sampling
cellular material within a body, means for marking cells within said
bodily fluid with a marker to produce marked cells, means for analyzing
said marked cells, a first means for removing said marker from said
marked cells, a second means for removing said marker from said marked
cells, means for sorting said cells within said bodily fluid to produce
sorted cells, and means for maintaining said sorted cells in a viable
state."
[0465] Referring again to published United States patent
application US2002/0182738, the implantable flow cytometer may contain
" . . . a first control valve operatively connected to said first means
for removing said marker from said marked cells and to said second
means for removing said marker from said marked cells . . . " (see
claim 3), a controller connected to the first control valve (claim 4),
a second control valve (claim 5), a third control valve (claim 6), a
dye separator (claims 7 and 8), an analyzer for testing blood purity
(claim 9), etc.
[0466] A similar flow cytometer is disclosed in published
United States patent application US2003/0036718, the entire disclosure
of which is also hereby incorporated by reference into this
specification.
[0467] Published United States patent application
US2003/0036776, the entire disclosure of which is hereby incorporated
by reference into this specification, discloses an MRI-compatible
implantable device. Claim 1 of this patent describes "A cardiac assist
device comprising means for connecting said cardiac assist device to a
heart, means for furnishing electrical impulses from said cardiac
assist device to said heart, means for ceasing the furnishing of said
electrical impulses to said heart, means for receiving pulsed radio
frequency fields, means for transmitting and receiving optical signals,
and means for protecting said heart and said cardiac assist device from
currents induced by said pulsed radio frequency fields, wherein said
cardiac assist device contains a control circuit comprised of a
parallel resonant frequency circuit and means for activating said
parallel resonant frequency circuit."
[0468] The " . . . means for activating said parallel resonant
circuit . . . " may contain " . . . comprise optical means (see claim
2) such as an optical switch (claim 3) comprised of " . . . a pin type
diode . . . " (claim 4) and connected to an optical fiber (claim 5).
The optical switch may be " . . . activated by light from a light
source . . . " (claim 6), and it may be located with a biological
organism (claim 7). The light source may be located within the
biological organism (claim 9), and it may provide " . . . light with a
wavelength of from about 750 to about 850 nanometers . . . ."
Polymeric Carriers and/or Delivery Systems
[0469] The anti-mitotic compound of this invention may be used
in conjunction with prior art polymeric carriers and/or delivery
systems comprised of polymeric material.
[0470] In one embodiment, the polymeric material is preferably
comprised of one or more anti-mitotic compounds that are adapted to be
released from the polymeric material when the polymeric material is
disposed within a biological organism. The polymeric material may be,
e.g., any of the drug eluting polymers known to those skilled in the
art.
[0471] By way of illustration, and referring to U.S. Pat. No.
3,279,996 (the entire disclosure of which is hereby incorporated by
reference into this specification), the polymeric material may be
silicone rubber. This patent claims "An implantate for releasing a drug
in the tissues of a living organism comprising a drug enclosed in a
capsule of silicone rubber, . . . said drug being soluble in and
capable of diffusing through said silicone rubber to the outer surface
of said capsule . . . ." One may use, as the anti-mitotic compound a
material that is soluble in and capable of diffusing through the
polymeric material.
[0472] At column 1 of U.S. Pat. No. 3,279,996, other "carrier
agents" which may be used as polymeric material are also disclosed,
including " . . . beeswax, peanut oil, stearates, etc." Any of these
"carrier agents" may be used as the polymeric material.
[0473] By way of further illustration, and as is disclosed in
U.S. Pat. No. 4,191,741 (the entire disclosure of which is hereby
incorporated by reference into this specification), one may use
dimethylpolsiloxane rubber as the polymeric material. This patent
claims "A solid, cylindrical, subcutaneous implant for improving the
rate of weight gain of ruminant animals which comprises (a) a
biocompatible inert core having a diameter of from about 2 to about 10
mm. and (b) a biocompatible coating having a thickness of from about
0.2 to about 1 mm., the composition of said coating comprising from
about 5 to about 40 percent by weight of estradiol and from about 95 to
about 60 percent by weight of a dimethylpolysiloxane rubber."
[0474] In column 1 of U.S. Pat. No. 4,191,741, other materials
which may be used as the polymeric material are disclosed. Thus, it is
stated in such patent that "Long et al. U.S. Pat. No. 3,279,996
describes an implant for releasing a drug in the tissues of a living
organism comprising the drug enclosed in a capsule formed of silicone
rubber. The drug migrates through the silicone rubber wall and is
slowly released into the living tissues. A number of biocompatible
silicone rubbers are described in the Long et al. patent. When a drug
delivery system such as that described in U.S. Pat. No. 3,279,996 is
used in an effort to administer estradiol to a ruminant animal a number
of problems are encountered. For example, an excess of the drug is
generally required in the hollow cavity of the implant. Also, it is
difficult to achieve a constant rate of administration of the drug over
a long time period such as from 200 to 400 days as would be necessary
for the daily administration of estradiol to a growing beef animal.
Katz et al. U.S. Pat. No. 4,096,239 describes an implant pellet
containing estradiol or estradiol benzoate which has an inert spherical
core and a uniform coating comprising a carrier and the drug. The
coating containing the drug must be both biocompatible and biosoluble,
i.e., the coating must dissolve in the body fluids which act upon the
pellet when it is implanted in the body. The rate at which the coating
dissolves determines the rate at which the drug is released.
Representative carriers for use in the coating material include
cholesterol, solid polyethylene glycols, high molecular weight fatty
acids and alcohols, biosoluble waxes, cellulose derivatives and solid
polyvinyl pyrrolidone." The polymeric material used with the
anti-mitotic compound is, in one embodiment, both biocompatible and
biosoluble.
[0475] By way of yet further illustration, and referring to
U.S. Pat. No. 4,429,080 (the entire disclosure of which is hereby
incorporated by reference into this specification), the polymeric
material may be a synthetic absorbable copolymer formed by
copolymerizing glycolide with trimethylene carbonate.
[0476] By way of yet further illustration, and referring to
U.S. Pat. No. 4,581,028 (the entire disclosure of which is hereby
incorporated by reference into this specification), the polymeric
material may be selected from the group consisting of polyester (such
as Dacron), polytetrafluoroethylene, polyurethane silicone-based
material, and polyamide. The polymeric material of this patent is
comprised " . . . of at least one antimicrobial agent selected from the
group consisting of the metal salts of sulfonamides." In one
embodiment, the polymeric material is comprised of an antimicrobial
agent.
[0477] By way of yet further illustration, and referring to
U.S. Pat. No. 4,481,353, (the entire disclosure of which is hereby
incorporated by reference into this specification), the polymeric
material may be the bioresorbable polyester disclosed in such patent.
U.S. Pat. No. 4,481,353 claims "A bioresorbable polyester in which
monomeric subunits are arranged randomly in the polyester molecules,
said polyester comprising the condensation reaction product of a Krebs
Cycle dicarboxylic acid or isomer or anhydride thereof, chosen for the
group consisting of succinic acid, fumaric acid, oxaloacetic acid,
L-malic acid, and D-malic acid, a diol having 2, 4, 6, or 8 carbon
atoms, and an alpha-hydroxy carboxylic acid chosen from the group
consisting of glycolic acid, L-lactic acid and D-lactic acid."
[0478] By way of yet further illustration, and referring to
U.S. Pat. No. 4,846,844 (the entire disclosure of which is hereby
incorporated by reference into this specification), the polymeric
material may be a silicone polymer matrix in which an anabolic agent
(such as an anabolic steroid, or estradiol) is disposed. This patent
claims "An implant adapted for the controlled release of an anabolic
agent, said implant comprising a silicone polymer matrix, an anabolic
agent in said polymer matrix, and an antimicrobial coating, wherein the
coating comprises a first-applied non-vulcanizing silicone fluid and a
subsequently applied antimicrobial agent in contact with said fluid."
[0479] By way of yet further illustration, and referring to
U.S. Pat. No. 4,916,193 (the entire disclosure of which is hereby
incorporated by reference into this specification), the polymeric
material may be a copolymer containing carbonate repeat units and ester
repeat units (see, e.g., claim 1 of the patent). As disclosed in column
2 of the patent, it may also be "collagen," "homopolymers and
copolymers of glycolic acid and lactic acid," "alpha-hydroxy carboxylic
acids in conjunction with Krebs cycle dicarboxylic acids and aliphatic
diols," "polycarbonate-containing polymers," and "high molecular weight
fiber-forming crystalline copolymers of lactide and glycolide." Thus,
it is disclosed in such column 2 that: "Various polymers have been
proposed for use in the fabrication of bioresorbable medical devices.
Examples of absorbable materials used in nerve repair include collagen
as disclosed by D. G. Kline and G. J. Hayes, "The Use of a Resorbable
Wrapper for Peripheral Nerve Repair, Experimental Studies in
Chimpanzees", J. Neurosurgery 21, 737 (1964). Artandi et al., U.S. Pat.
No. 3,272,204 (1966) reports the use of collagen protheses that are
reinforced with nonabsorbable fabrics. These articles are intended to
be placed permanently in a human body. However, one of the
disadvantages inherent with collagenous materials, whether utilized
alone or in conjunction with biodurable materials, is their potential
antigenicity. Other biodegradable polymers of particular interest for
medical implantation purposes are homopolymers and copolymers of
glycolic acid and lactic acid. A nerve cuff in the form of a smooth,
rigid tube has been fabricated from a copolymer of lactic and glycolic
acids [The Hand; 10 (3) 259 (1978)]. European patent application
No.118-458-A discloses biodegradable materials used in organ protheses
or artificial skin based on poly-L-lactic acid and/or poly-DL-lactic
acid and polyester or polyether urethanes. U.S. Pat. No. 4,481,353
discloses bioresorbable polyester polymers, and composites containing
these polymers, that are also made up of alpha-hydroxy carboxylic
acids, in conjunction with Krebs cycle dicarboxylic acids and aliphatic
diols. These polyesters are useful in fabricating nerve guidance
channels as well as other surgical articles such as sutures and
ligatures. U.S. Pat. Nos. 4,243,775 and 4,429,080 disclose the use of
polycarbonate-containing polymers in certain medical applications,
especially sutures, ligatures and haemostatic devices. However, this
disclosure is clearly limited only to "AB" and "ABA" type block
copolymers where only the "B" block contains poly(trimethylene
carbonate) or a random copolymer of glycolide with trimethylene
carbonate and the "A" block is necessarily limited to glycolide. In the
copolymers of this patent, the dominant portion of the polymer is the
glycolide component. U.S. Pat. No. 4,157,437 discloses high molecular
weight, fiber-forming crystalline copolymers of lactide and glycolide
which are disclosed as useful in the preparation of absorbable surgical
sutures. The copolymers of this patent contain from about 50 to 75 wt.
% of recurring units derived from glycolide."
[0480] By way of further illustration, and referring to U.S.
Pat. No. 5,176,907 (the entire disclosure of which is hereby
incorporated by reference into this specification), the polymeric
material may be the poly-phosphoester-urethane) described and claimed
in claim 1 of such patent. Furthermore, the polymeric material may be
one or more of the biodegradable polymers discussed in columns 1 and 2
of such patent. As is disclosed in such columns 1 and 2: "Polymers have
been used as carriers of therapeutic agents to effect a localized and
sustained release (Controlled Drug Delivery, Vol. I and II, Bruck, S.
D., (ed.), CRC Press, Boca Raton, Fla., 1983; Leong, et al., Adv. Drug
Delivery Review, 1:199, 1987). These anti-mitotic compound delivery
systems simulate infusion and offer the potential of enhanced
therapeutic efficacy and reduced systemic toxicity." The polymeric
material may be such a poly-phosphoester-urethane.
[0481] U.S. Pat. No. 5,176,907 also discloses "For a
non-biodegradable matrix, the steps leading to release of the
anti-mitotic compound are water diffusion into the matrix, dissolution
of the therapeutic agent, and out-diffusion of the anti-mitotic
compound through the channels of the matrix. As a consequence, the mean
residence time of the anti-mitotic compound existing in the soluble
state is longer for a non-biodegradable matrix than for a biodegradable
matrix where a long passage through the channels is no longer required.
Since many pharmaceuticals have short half-lives it is likely that the
anti-mitotic compound is decomposed or inactivated inside the
non-biodegradable matrix before it can be released. This issue is
particularly significant for many bio-macromolecules and smaller
polypeptides, since these molecules are generally unstable in buffer
and have low permeability through polymers. In fact, in a
non-biodegradable matrix, many bio-macromolecules will aggregate and
precipitate, clogging the channels necessary for diffusion out of the
carrier matrix. This problem is largely alleviated by using a
biodegradable matrix which allows controlled release of the therapeutic
agent. Biodegradable polymers differ from non-biodegradable polymers in
that they are consumed or biodegraded during therapy. This usually
involves breakdown of the polymer to its monomeric subunits, which
should be biocompatible with the surrounding tissue. The life of a
biodegradable polymer in vivo depends on its molecular weight and
degree of cross-linking; the greater the molecular weight and degree of
crosslinking, the longer the life. The most highly investigated
biodegradable polymers are polylactic acid (PLA), polyglycolic acid
(PGA), polyglycolic acid (PGA), copolymers of PLA and PGA, polyamides,
and copolymers of polyamides and polyesters. PLA, sometimes referred to
as polylactide, undergoes hydrolytic de-esterification to lactic acid,
a normal product of muscle metabolism. PGA is chemically related to PLA
and is commonly used for absorbable surgical sutures, as is the PLA/PGA
copolymer. However, the use of PGA in controlled-release implants has
been limited due to its low solubility in common solvents and
subsequent difficulty in fabrication of devices." The polymeric
material 14 may be a biodegradable polymeric material.
[0482] U.S. Pat. No. 5,176,907 also discloses "An advantage of
a biodegradable material is the elimination of the need for surgical
removal after it has fulfilled its mission. The appeal of such a
material is more than simply for convenience. From a technical
standpoint, a material which biodegrades gradually and is excreted over
time can offer many unique advantages."
[0483] U.S. Pat. No. 5,176,907 also discloses "A biodegradable
therapeutic agent delivery system has several additional advantages: 1)
the therapeutic agent release rate is amenable to control through
variation of the matrix composition; 2) implantation can be done at
sites difficult or impossible for retrieval; 3) delivery of unstable
therapeutic agents is more practical. This last point is of particular
importance in light of the advances in molecular biology and genetic
engineering which have lead to the commercial availability of many
potent bio-macromolecules. The short in vivo half-lives and low GI
tract absorption of these polypeptides render them totally unsuitable
for conventional oral or intravenous administration. Also, because
these substances are often unstable in buffer, such polypeptides cannot
be effectively delivered by pumping devices."
[0484] U.S. Pat. No. 5,176,907 also discloses "In its simplest
form, a biodegradable therapeutic agent delivery system consist of a
dispersion of the drug solutes in a polymer matrix. The therapeutic
agent is released as the polymeric matrix decomposes, or biodegrades
into soluble products which are excreted from the body. Several classes
of synthetic polymers, including polyesters (Pitt, et al., in
Controlled Release of Bioactive Materials, R. Baker, Ed., Academic
Press, New York, 1980); polyamides (Sidman, et al., Journal of Membrane
Science, 7:227, 1979); polyurethanes (Maser, et al., Journal of Polymer
Science, Polymer Symposium, 66:259, 1979); polyorthoesters (Heller, et
al., Polymer Engineering Science, 21:727, 1981); and polyanhydrides
(Leong, et al., Biomaterials, 7:364, 1986) have been studied for this
purpose." The "therapeutic agent" used in this (and other) patents may
be the anti-mitotic compound of this invention.
[0485] By way of yet further illustration, and referring to
U.S. Pat. No. 5,194,581 (the entire disclosure of which is hereby
incorporated by reference into this specification), the polymeric
material may the poly (phosphoester) compositions described in such
patent.
[0486] The polymeric material may be in the form of
microcapsules within which the anti-mitotic compound of this invention
is disposed. Thus, one may use microcapsules such as, e.g., the
microcapsule described in U.S. Pat. No. 6,117,455, the entire
disclosure of which is hereby incorporated by reference into this
specification. As is disclosed in the abstract of this patent, there is
provided "A sustained-release microcapsule contains an amorphous
water-soluble pharmaceutical agent having a particle size of from 1
nm-10 .mu.m and a polymer. The microcapsule is produced by dispersing,
in an aqueous phase, a dispersion of from 0.001-90% (w/w) of an
amorphous water-soluble pharmaceutical agent in a solution of a polymer
having a wt. avg. molecular weight of 2,000 in an organic solvent to
prepare an s/o/w emulsion and subjecting the emulsion to in-water
drying."
[0487] In one embodiment, disclosed in U.S. Pat. No. 5,484,584
(the entire disclosure of which is hereby incorporated by reference
into this specification), a poly (benzyl-L-glutamate) microsphere is
disclosed (see, e.g., claim 10); the anti-mitotic compound of this
invention may be disposed within and/or on the surface of such
microsphere. As is disclosed in the abstract of this patent, "The
present invention relates to a highly efficient method of preparing
modified microcapsules exhibiting selective targeting. These
microcapsules are suitable for encapsulation surface attachment of
therapeutic and diagnostic agents. In one aspect of the invention,
surface charge of the polymeric material is altered by conjugation of
an amino acid ester to the providing improved targeting of encapsulated
agents to specific tissue cells. Examples include encapsulation of
radiodiagnostic agents in 1 .mu.m capsules to provide improved
opacification and encapsulation of cytotoxic agents in 100 .mu.m
capsules for chemoembolization procedures. The microcapsules are
suitable for attachment of a wide range of targeting agents, including
antibodies, steroids and drugs, which may be attached to the
microcapsule polymer before or after formation of suitably sized
microcapsules. The invention also includes microcapsules surface
modified with hydroxyl groups. Various agents such as estrone may be
attached to the microcapsules and effectively targeted to selected
organs."
[0488] The release rate of the anti-mitotic compound from the
polymeric material may be varied in, e.g., the manner suggested in
column 6 of U.S. Pat. No. 5,194,581, the entire disclosure of which is
hereby incorporated by reference into this specification. As is
disclosed in such column 6, "A wide range of degradation rates can be
obtained by adjusting the hydrophobicities of the backbones of the
polymers and yet the biodegradability is assured. This can be achieved
by varying the functional groups R or R'. The combination of a
hydrophobic backbone and a hydrophilic linkage also leads to
heterogeneous degradation as cleavage is encouraged, but water
penetration is resisted." As is disclosed at column 9 of such patent,
"The rate of biodegradation of the poly(phosphoester) compositions of
the invention may also be controlled by varying the hydrophobicity of
the polymer. The mechanism of predictable degradation preferably relies
on either group R' in the poly(phosphoester) backbone being hydrophobic
for example, an aromatic structure, or, alternatively, if the group R'
is not hydrophobic, for example an aliphatic group, then the group R is
preferably aromatic. The rates of degradation for each
poly(phosphoester) composition are generally predictable and constant
at a single pH. This permits the compositions to be introduced into the
individual at a variety of tissue sites. This is especially valuable in
that a wide variety of compositions and devices to meet different, but
specific, applications may be composed and configured to meet specific
demands, dimensions, and shapes--each of which offers individual, but
different, predictable periods for degradation. When the composition of
the invention is used for long term delivery of an anti-mitotic
compound relatively hydrophobic backbone matrix, for example,
containing bisphenol A, is preferred. It is possible to enhance the
degradation rate of the poly(phosphoester) or shorten the functional
life of the device, by introducing hydrophilic or polar groups, into
the backbone matrix. Further, the introduction of methylene groups into
the backbone matrix will usually increase the flexibility of the
backbone and decrease the crystallinity of the polymer. Conversely, to
obtain a more rigid backbone matrix, for example, when used
orthopedically, an aromatic structure, such as a diphenyl group, can be
incorporated into the matrix. Also, the poly(phosphoester) can be
crosslinked, for example, using 1,3,5-trihydroxybenzene or (CH2OH)4C,
to enhance the modulus of the polymer. Similar considerations hold for
the structure of the side chain (R)."
[0489] By way of yet further illustration, and referring to
U.S. Pat. No. 5,252,713 (the entire disclosure of which is hereby
incorporated by reference into this specification), the polymeric
material may be a polypeptide comprising at least one drug-binding
domain that non-covalently binds a drug. The means of identifying and
isolating such a polypeptide is described at columns 5-7 of the patent,
wherein it is disclosed that: "The process of isolating a polymeric
carrier from a drug-binding, large molecular weight protein begins with
the identification of a large protein that can non-covalently bind the
drug of interest. Examples of such protein/drug pairs are shown in
Table I. The drugs in the Table (other than the steroids) are
anti-cancer drugs . . . "
[0490] As is also disclosed in U.S. Pat. No. 5,252,713, "Other
drug-binding proteins may be identified by appropriate analytical
procedures, including Western blotting of large proteins or protein
fragments and subsequent incubation with a detectable form of drug.
Alternative procedures include combining a drug and a protein in a
solution, followed by size exclusion HPLC gel filtration, thin-layer
chromatography (TLC), or other analytical procedures that can
discriminate between free and protein-bound drug. Detection of drug
binding can be accomplished by using radiolabeled, fluorescent, or
colored drugs and appropriate detection methods. Equilibrium dialysis
with labeled drug may be used. Alternative methods include monitoring
the fluorescence change that occurs upon binding of certain drugs
(e.g., anthracyclines or analogs thereof, which should be fluorescent)
. . . . " In one detection method, drug and protein are mixed, and an
aliquot of this solution (not exceeding 5% of the column volume of an
HPLC column, such as a Bio-sil TSK-250 7.5.times.30 cm column) is
loaded onto the HPLC column. The flow rate is 1 ml/min. The drug bound
to protein will elute first, in a separate peak, followed by free drug,
eluting at a position characteristic of its molecular weight. If the
drug is doxorubicin, both a 280-nm as well as a 495-nm adsorptive peak
will correspond to the elution position of the protein if interaction
occurs. The elution peaks for other drugs will indicate whether drug
binding occurs . . . ."
[0491] As is also disclosed in U.S. Pat. No. 5,252,713,
"Knowledge of the chemical structure of a particular drug (i.e.,
whether chemically reactive functional groups are present) allows one
to predict whether covalent binding of the drug to a given protein can
occur. Additional methods for determining whether drug binding is
covalent or non-covalent include incubating the drug with the protein,
followed by dialysis or subjecting the protein to denaturing
conditions. Release of the drug from the drug-binding protein during
these procedures indicates that the drug was non-covalently bound.
Usually, a dissociation constant of about 10-15 M or less indicates
covalent or extremely tight non-covalent binding . . . ."
[0492] As is also disclosed in U.S. Pat. No. 5,252,713, "During
dialysis, non-covalently bound drug molecules are released over time
from the protein and pass through a dialysis membrane, whereas
covalently bound drug molecules are retained on the protein. An
equilibrium constant of about 10-5 M indicates non-covalent binding.
Alternatively, the protein may be subjected to denaturing conditions;
e.g., by gel electrophoresis on a denaturing (SDS) gel or on a gel
filtration column in the presence of a strong denaturant such as 6M
guanidine. Covalently bound drug molecules remain bound to the
denatured protein, whereas non-covalently bound drug molecules are
released and migrate separately from the protein on the gel and are not
retained with the protein on the column."
[0493] As is also disclosed in U.S. Pat. No. 5,252,713, "Once a
protein that can non-covalently bind a particular drug of interest is
identified, the drug-binding domain is identified and isolated from the
protein by any suitable means. Protein domains are portions of proteins
having a particular function or activity (in this case, non-covalent
binding of drug molecules). The present invention provides a process
for producing a polymeric carrier, comprising the steps of generating
peptide fragments of a protein that is capable of non-covalently
binding a drug and identifying a drug-binding peptide fragment, which
is a peptide fragment containing a drug-binding domain capable of
non-covalently binding the drug, for use as the polymeric carrier."
[0494] As is also disclosed in U.S. Pat. No. 5,252,713, "One
method for identifying the drug-binding domain begins with digesting or
partially digesting the protein with a proteolytic enzyme or specific
chemicals to produce peptide fragments. Examples of useful proteolytic
enzymes include lys-C-endoprotease, arg-C-endoprotease, V8 protease,
endoprolidase, trypsin, and chymotrypsin. Examples of chemicals used
for protein digestion include cyanogen bromide (cleaves at methionine
residues), hydroxylamine (cleaves the Asn-Gly bond), dilute acetic acid
(cleaves the Asp-Pro bond), and iodosobenzoic acid (cleaves at the
tryptophane residue). In some cases, better results may be achieved by
denaturing the protein (to unfold it), either before or after
fragmentation."
[0495] As is also disclosed in U.S. Pat. No. 5,252,713, "The
fragments may be separated by such procedures as high pressure liquid
chromatography (HPLC) or gel electrophoresis. The smallest peptide
fragment capable of drug binding is identified using a suitable
drug-binding analysis procedure, such as one of those described above.
One such procedure involves SDS-PAGE gel electrophoresis to separate
protein fragments, followed by Western blotting on nitrocellulose, and
incubation with a colored drug like adriamycin. The fragments that have
bound the drug will appear red. Scans at 495 nm with a laser
densitometer may then be used to analyze (quantify) the level of drug
binding."
[0496] As is also disclosed in U.S. Pat. No. 5,252,713,
"Preferably, the smallest peptide fragment capable of non-covalent drug
binding is used. It may occasionally be advisable, however, to use a
larger fragment, such as when the smallest fragment has only a
low-affinity drug-binding domain."
[0497] As is also disclosed in U.S. Pat. No. 5,252,713, "The
amino acid sequence of the peptide fragment containing the drug-binding
domain is elucidated. The purified fragment containing the drug-binding
region is denatured in 6M guanidine hydrochloride, reduced and
carboxymethylated by the method of Crestfield et al., J. Biol. Chem.
238:622, 1963. As little as 20 to 50 picomoles of each peptide fragment
can be analyzed by automated Edman degradation using a gas-phase or
liquid pulsed protein sequencer (commercially available from Applied
Biosystems, Inc.). If the peptide fragment is longer than 30 amino
acids, it will most likely have to be fragmented as above and the amino
acid sequence patched together from sequences of overlapping
fragments."
[0498] As is also disclosed in U.S. Pat. No. 5,252,713, "Once
the amino acid sequence of the desired peptide fragment has been
determined, the polymeric carriers can be made by either one of two
types of synthesis. The first type of synthesis comprises the
preparation of each peptide chain with a peptide synthesizer (e.g.,
commercially available from Applied Biosystems). The second method
utilizes recombinant DNA procedures." The polymeric material 14 may
comprise one or more of the polymeric carriers described in U.S. Pat.
No. 5,252,713.
[0499] As is also disclosed in U.S. Pat. No. 5,252,713,
"Peptide amides can be made using 4-methylbenzhydrylamine-derivatized,
cross-linked polystyrene-1% divinylbenzene resin and peptide acids made
using PAM (phenylacetamidomethyl) resin (Stewart et al., "Solid Phase
Peptide Synthesis," Pierce Chemical Company, Rockford, Ill., 1984). The
synthesis can be accomplished either using a commercially available
synthesizer, such as the Applied Biosystems 430A, or manually using the
procedure of Merrifield et al., Biochemistry 21:5020-31,1982; or
Houghten, PNAS 82:5131-35,1985. The side chain protecting groups are
removed using the Tam-Merrifield low-high HF procedure (Tam et al., J.
Am. Chem. Soc. 105:6442-55, 1983). The peptide can be extracted with
20% acetic acid, lyophilized, and purified by reversed-phase HPLC on a
Vydac C-4 Analytical Column using a linear gradient of 100% water to
100% acetonitrile-0.1% trifluoroacetic acid in 50 minutes. The peptide
is analyzed using PTC-amino acid analysis (Heinrikson et al., Anal.
Biochem. 136:65-74,1984). After gas-phase hydrolysis (Meltzer et al.,
Anal. Biochem. 160: 356-61, 1987), sequences are confirmed using the
Edman degradation or fast atom bombardment mass spectroscopy. After
synthesis, the polymeric carriers can be tested for drug binding using
size-exclusion HPLC, as described above, or any of the other analytical
methods listed above."
[0500] The polymeric carriers of U.S. Pat. No. 5,252,713 may be
used with the anti-mitotic compounds of this invention. As is also
disclosed in U.S. Pat. No. 5,252,713, "The polymeric carriers of the
present invention preferably comprise more than one drug-binding
domain. A polypeptide comprising several drug-binding domains may be
synthesized. Alternatively, several of the synthesized drug-binding
peptides may be joined together using bifunctional cross-linkers, as
described below." The polymeric material in one embodiment, comprises
more than one drug-binding domain.
[0501] By way of yet further illustration, and referring to
U.S. Pat. No. 5,420,105 (the entire disclosure of which is hereby
incorporated by reference into this specification), the polymeric
material may form a conjugate with a ligand. Thus, and referring to
claim 1 of such patent, such conjugate may be "A ligand or an
anti-ligand/polymeric carrier/drug conjugate comprising a ligand
consisting of biotin or an anti-ligand selected from the group
consisting of avidin and streptavidin, which ligand or anti-ligand is
covalently bound to a polymeric carrier that comprises at least one
drug-binding domain derived from a drug-binding protein, and at least
one drug non-covalently bound to the polymeric carrier, wherein the
polymeric carrier does not comprise an entire drug-binding protein, but
is derived from a drug-binding domain of said drug-binding protein
which derivative non-covalently binds a drug which is non-covalently
bound by an entire naturally occurring drug-binding protein, and
wherein the molecular weight of the polymeric carrier is less than
about 60,000 daltons, and wherein said drug is selected from the group
consisting of an anti-cancer anthracycline antibiotic, cis-platinum,
methotrexate, vinblastine, mitoxanthrone ARA-C, 6-mercaptopurine,
6-mercaptoguanosine, mytomycin C and a steroid."
[0502] The polymeric material form comprise a reservoir (see
U.S. Pat. No. 5,447,724) for the anti-mitotic compound(s). Such a
reservoir may be constructed in accordance with the procedure described
in U.S. Pat. No. 5,447,724, which claims "A medical device at least a
portion of which comprises: a body insertable into a patient, said body
having an exposed surface which is adapted for exposure to tissue of a
patient and constructed to release, at a predetermined rate,
therapeutic agent to inhibit adverse physiological reaction of said
tissue to the presence of the body of said medical device, said
therapeutic agent selected from the group consisting of
antithrombogenic agents, antiplatelet agents, prostaglandins,
thrombolytic drugs, antiproliferative drugs, antirejection drugs,
antimicrobial drugs, growth factors, and anticalcifying agents, at said
exposed surface, said body including: an outer polymer metering layer,
and an internal polymer layer underlying and supporting said outer
polymer metering layer and in intimate contact therewith, said internal
polymer layer defining a reservoir for said therapeutic agent, said
reservoir formed by a polymer selected from the group consisting of
polyurethanes and its copolymers, silicone and its copolymers, ethylene
vinylacetate, thermoplastic elastomers, polyvinylchloride, polyolefins,
cellulosics, polyamides, polytetrafluoroethylenes, polyesters,
polycarbonates, polysulfones, acrylics, and acrylonitrile butadiene
styrene copolymers, said outer polymer metering layer having a stable,
substantially uniform, predetermined thickness covering the underlying
reservoir so that no portion of the reservoir is directly exposed to
body fluids and incorporating a distribution of an elutable component
which, upon exposure to body fluid, elutes from said outer polymer
metering layer to form a predetermined porous network capable of
exposing said anti-mitotic compound in said reservoir in said internal
polymer layer to said body fluid, said elutable component is selected
from the group consisting of polyethylene oxide, polyethylene glycol,
polyethylene oxide/polypropylene oxide copolymers,
polyhydroxyethylmethacrylate, polyvinylpyrollidone, polyacrylamide and
its copolymers, liposomes, albumin, dextran, proteins, peptides,
polysaccharides, polylactides, polygalactides, polyanhydrides,
polyorthoesters and their copolymers, and soluble cellulosics, said
reservoir defined by, said internal polymer layer incorporating said
therapeutic agent in a manner that permits substantially free outward
release of said therapeutic agent from said reservoir into said porous
network of said outer polymer metering layer as said elutable component
elutes from said polymer metering layer, said predetermined thickness
and the concentration and particle size of said elutable component
being selected to enable said outer polymer metering layer to meter the
rate of outward migration of the therapeutic agent from said internal
reservoir layer through said outer polymer metering layer, said outer
polymer metering layer and said internal polymer layer, in combination,
enabling prolonged controlled release, at said predetermined rate, of
said therapeutic agent at an effective dosage level from said exposed
surface of said body of said medical device to the tissue of said
patient to inhibit adverse reaction of the patient to the prolonged
presence of said body of said medical device in said patient."
[0503] U.S. Pat. No. 5,447,724 also discloses the preparation
of the "reservoir" in e.g., in columns 8 and 9 of the patent, wherein
it is disclosed that: "A particular advantage of the time-release
polymers of the invention is the manufacture of coated articles, i.e.,
medical instruments. Referring now to FIG. 3, the article to be coated
such as a catheter 50 may be mounted on a mandrel or wire 60 and
aligned with the preformed apertures 62 (slightly larger than the
catheter diameter) in the teflon bottom piece 63 of a boat 64 that
includes a mixture 66 of polymer at ambient temperature, e.g.,
25.degree. C. To form the reservoir portion, the mixture may include,
for example, nine parts solvent, e.g. tetrahydrofuran (THF), and one
part Pellthane.RTM. polyurethane polymer which includes the desired
proportion of ground sodium heparin particles. The boat may be moved in
a downward fashion as indicated by arrow 67 to produce a coating 68 on
the exterior of catheter 50. After a short (e.g., 15 minutes) drying
period, additional coats may be added as desired. After coating, the
catheter 50 is allowed to air dry at ambient temperature for about two
hours to allow complete solvent evaporation and/or polymerization to
form the reservoir portion. For formation of the surface-layer the boat
64 is cleaned of the reservoir portion mixture and filled with a
mixture including a solvent, e.g. THF (9 parts) and Pellthane.RTM. (1
part) having the desired amount of elutable component. The boat is
moved over the catheter and dried, as discussed above to form the
surface-layer. Subsequent coats may also be formed. An advantage of the
dipping method and apparatus described with regard to FIG. 3 is that
highly uniform coating thickness may be achieved since each portion of
the substrate is successively in contact with the mixture for the same
period of time and further, no deformation of the substrate occurs.
Generally, for faster rates of movement of the boat 64, thicker layers
are formed since the polymer gels along the catheter surfaces upon
evaporation of the solvent, rather than collects in the boat as happens
with slower boat motion. For thin layers, e.g., on the order of a few
mils, using a fairly volatile solvent such as THF, the dipping speed is
generally between 26 to 28 cm/min for the reservoir portion and around
21 cm/min for the outer layer for catheters in the range of 7 to 10 F.
The thickness of the coatings may be calculated by subtracting the
weight of the coated catheter from the weight of the uncoated catheter,
dividing by the calculated surface area of the uncoated substrate and
dividing by the known density of the coating. The solvent may be any
solvent that solubilizes the polymer and preferably is a more volatile
solvent that evaporates rapidly at ambient temperature or with mild
heating. The solvent evaporation rate and boat speed are selected to
avoid substantial solubilizing of the catheter substrate or degradation
of a prior applied coating so that boundaries between layers are
formed."
[0504] By way of yet further illustration, and referring to
U.S. Pat. No. 5,464,650 (the entire disclosure of which is hereby
incorporated by reference into this specification), the polymeric
material may be one or of the polymeric materials discussed at columns
4 and 5 of such patent. Referring to such columns 4 and 5, it is
disclosed that: "The polymer chosen must be a polymer that is
biocompatible and minimizes irritation to the vessel wall when the
stent is implanted. The polymer may be either a biostable or a
bioabsorbable polymer depending on the desired rate of release or the
desired degree of polymer stability, but a bioabsorbable polymer is
probably more desirable since, unlike a biostable polymer, it will not
be present long after implantation to cause any adverse, chronic local
response. Bioabsorbable polymers that could be used include
poly(L-lactic acid), polycaprolactone, poly(lactide-co-glycolide),
poly(hydroxybutyrate), poly(hydroxybutyrate-co-valerate),
polydioxanone, polyorthoester, polyanhydride, poly(glycolic acid),
poly(D,L-lactic acid), poly(glycolic acid-co-trimethylene carbonate),
polyphosphoester, polyphosphoester urethane, poly(amino acids),
cyanoacrylates, poly(trimethylene carbonate), poly(iminocarbonate),
copoly(ether-esters) (e.g. PEO/PLA), polyalkylene oxalates,
polyphosphazenes and biomolecules such as fibrin, fibrinogen,
cellulose, starch, collagen and hyaluronic acid. Also, biostable
polymers with a relatively low chronic tissue response such as
polyurethanes, silicones, and polyesters could be used and other
polymers could also be used if they can be dissolved and cured or
polymerized on the stent such as polyolefins, polyisobutylene and
ethylene-alphaolefin copolymers; acrylic polymers and copolymers, vinyl
halide polymers and copolymers, such as polyvinyl chloride; polyvinyl
ethers, such as polyvinyl methyl ether; polyvinylidene halides, such as
polyvinylidene fluoride and polyvinylidene chloride; polyacrylonitrile,
polyvinyl ketones; polyvinyl aromatics, such as polystyrene, polyvinyl
esters, such as polyvinyl acetate; copolymers of vinyl monomers with
each other and olefins, such as ethylene-methyl methacrylate
copolymers, acrylonitrile-styrene copolymers, ABS resins, and
ethylene-vinyl acetate copolymers; polyamides, such as Nylon 66 and
polycaprolactam; alkyd resins; polycarbonates; polyoxymethylenes;
polyimides; polyethers; epoxy resins, polyurethanes; rayon;
rayon-triacetate; cellulose, cellulose acetate, cellulose butyrate;
cellulose acetate butyrate; cellophane; cellulose nitrate; cellulose
propionate; cellulose ethers; and carboxymethyl cellulose. The ratio of
therapeutic substance to polymer in the solution will depend on the
efficacy of the polymer in securing the therapeutic substance onto the
stent and the rate at which the coating is to release the therapeutic
substance to the tissue of the blood vessel. More polymer may be needed
if it has relatively poor efficacy in retaining the therapeutic
substance on the stent and more polymer may be needed in order to
provide an elution matrix that limits the elution of a very soluble
therapeutic substance. A wide ratio of therapeutic substance to polymer
could therefore be appropriate and could range from about 10:1 to about
1:100."
[0505] By way of yet further illustration, and referring to
U.S. Pat. No. 5,470,307 (the entire disclosure of which is hereby
incorporated by reference into this specification), the polymeric
material may a synthetic or natural polymer, such as polyamide,
polyester, polyolefin (polypropylene or polyethylene), polyurethane,
latex, acrylamide, methacrylate, polyvinylchloride, polysulfone, and
the like; see, e.g., column 11 of the patent.
[0506] In one embodiment, the polymeric material is bound to
the anti-mitotic compound by one or more photosensitive linkers. The
process of preparing and binding these photosensitive linkers is
described in columns 8-9 of U.S. Pat. No. 5,470,307, wherein it is
disclosed that: "The process of fabricating a catheter 10 having a
desired therapeutic agent 20 connected thereto and then controllably
and selectively releasing that therapeutic agent 20 at a remote site
within a patient may be summarized in five steps. 1. Formation of
Substrate. The substrate layer 16 is formed on or applied to the
surface 14 of the catheter body 12, and subsequently or simultaneously
prepared for coupling to the linker layer 18. This is accomplished by
modifying the substrate layer 16 to expose or add groups such as
carboxyls, amines, hydroxyls, or sulfhydryls. In some cases, this may
be followed by customizing the substrate layer 16 with an extender 22
that will change the functionality, for example by adding a maleimide
group that will accept a Michael's addition of a sulfhydryl at one end
of a bifunctional photolytic linker 18. The extent of this
derivitization is measured by adding group-specific probes (such as 1
pyrenyl diazomethane for carboxyls, 1 pyrene butyl hydrazine for
amines, or Edman's reagent for sulfhydryls Molecular Probes, Inc. of
Eugene, Oreg. or Pierce Chemical of Rockford, III.) or other
fluorescent dyes that may be measured optically or by flow cytometry.
The substrate layer 16 can be built up to increase its capacity by
several methods, examples of which are discussed below."
[0507] As is also disclosed in U.S. Pat. No. 5,470,307, "2.
Selection of Photolytic Release Mechanism. A heterobifunctional
photolytic linker 18 suitable for the selected therapeutic agent d20
and designed to couple readily to the functionality of the substrate
layer 16 is prepared, and may be connected to the substrate layer 16.
Alternately, the photolinker 18 may first be bonded to the therapeutic
agent 20, with the combined complex of the therapeutic agent 20 and
photolytic linker 18 together being connected to the substrate layer
16. 3. Selection of the Therapeutic Agent. Selection of the appropriate
therapeutic agent 20 for a particular clinical application will depend
upon the prevailing medical practice. One representative example
described below for current use in PTCA and PTA procedures involves the
amine terminal end of a twelve amino acid peptide analogue of hirudin
being coupled to a chloro carbonyl group on the photolytic linker 18.
Another representative example is provided below where the therapeutic
agent 20 is a nucleotide such as an antisense oligodeoxynucleotide
where a terminal phosphate is bonded by means of a diazoethane located
on the photolytic linker 18. A third representative example involves
the platelet inhibitor dipyridamole (persantin) that is attached
through an alkyl hydroxyl by means of a diazo ethane on the photolytic
linker 18. 4. Fabrication of the Linker-Agent Complex and Attachment to
the Substrate. The photolytic linker 18 or the photolytic linker 18
with the therapeutic agent 20 attached are connected to the substrate
layer 16 to complete the catheter 10. A representative example is a
photolytic linker 18 having a sulfhydryl disposed on the non-photolytic
end for attachment to the substrate layer 16, in which case the
coupling will occur readily in a neutral buffer solution to a
maleimide-modified substrate layer 16 on the catheter 10. Once the
therapeutic agent 20 has been attached to the catheter 10, it is
necessary that the catheter 10 be handled in a manner that prevents
damage to the substrate layer 16, photolytic linker layer 18, and
therapeutic agent 20, which may include subsequent sterilization,
protection from ambient light, heat, moisture, and other environmental
conditions that would adversely affect the operation or integrity of
the drug-delivery catheter system 10 when used to accomplish a specific
medical procedure on a patient."
[0508] In the process of U.S. Pat. No. 5,470,307, the linker is
preferably bound to the polymeric material through a modified
functional group. The preparation of such modified functional groups is
discussed at columns 10-13 of such patent, wherein it is disclosed
that: "Most polymers including those discussed herein can be made of
materials which have modifiable functional groups or can be treated to
expose such groups. Polyamide (nylon) can be modified by acid treatment
to produce exposed amines and carboxyls. Polyethylene terephthalate
(PET, Dacron.RTM.) is a polyester and can be chemically treated to
expose hydroxyls and carboxyls. Polystyrene has an exposed phenyl group
that can be derivitized. Polyethylene and polypropylene (collectively
referred to as polyolefins) have simple carbon backbones which can be
derivitized by treatment with chromic and nitric acids to produce
carboxyl functionality, photocoupling with suitably modified
benzophenones, or by plasma grafting of selected monomers to produce
the desired chemical functionality. For example, grafting of acrylic
acid will produce a surface with a high concentration of carboxyl
groups, whereas thiophene or 1,6 diaminocyclohexane will produce a
surface containing sulfhydryls or amines, respectively. The surface
functionality can be modified after grafting of a monomer by addition
of other functional groups. For example, a carboxyl surface can be
changed to an amine by coupling 1,6 diamino hexane, or to a sulfhydryl
surface by coupling mercapto ethyl amine."
[0509] As is also disclosed in U.S. Pat. No. 5,470,307,
"Acrylic acid can be polymerized onto latex, polypropylene,
polysulfone, and polyethylene terephthalate (PET) surfaces by plasma
treatment. When measured by toludine blue dye binding, these surfaces
show intense modification. On polypropylene microporous surfaces
modified by acrylic acid, as much as 50 nanomoles of dye binding per
cm2 of external surface area can be found to represent carboxylated
surface area. Protein can be linked to such surfaces using carbonyl
diimidazole (CDI) in tetrahydrofuran as a coupling system, with a
resultant concentration of one nanomole or more per cm2 of external
surface. For a 50,000 Dalton protein, this corresponds to 50 .mu.g per
cm2, which is far above the concentration expected with simple plating
on the surface. Such concentrations of an anti-mitotic compound 20 on
the angioplasty (PTCA) balloon of a catheter 10, when released, would
produce a high concentration of that therapeutic agent 20 at the site
of an expanded coronary artery. However, plasma-modified surfaces are
difficult to control and leave other oxygenated carbons that may cause
undesired secondary reactions"
[0510] As is also disclosed in U.S. Pat. No. 5,470,307, "In the
case of balloon dilation catheters 10, creating a catheter body 12
capable of supporting a substrate layer 16 with enhanced surface area
can be done by several means known to the art including altering
conditions during balloon spinning, doping with appropriate monomers,
applying secondary coatings such as polyethylene oxide hydrogel,
branched polylysines, or one of the various Starburst.TM.. dendrimers
offered by the Aldrich Chemical Company of Milwaukee, Wis."
[0511] As is also disclosed in U.S. Pat. No. 5,470,307, "The
most likely materials for the substrate layer 16 in the case of a
dilation balloon catheter 10 or similar apparatus are shown in FIGS.
1a-1g, including synthetic or natural polymers such as polyamide,
polyester, polyolefin (polypropylene or polyethylene), polyurethane,
and latex. For solid support catheter bodies 12, usable plastics might
include acrylamides, methacrylates, urethanes, polyvinylchloride,
polysulfone, or other materials such as glass or quartz, which are all
for the most part derivitizable." In one embodiment, depicted in FIG.
1A, the photosensitive linker is bonded to a plastic container 12.
[0512] As is also disclosed in U.S. Pat. No. 5,470,307,
"Referring to the polymers shown in FIGS. 1a-1g, polyamide (nylon) is
treated with 3-5M hydrochloric acid to expose amines and carboxyl
groups using conventional procedures developed for enzyme coupling to
nylon tubing. A further description of this process may be obtained
from Inman, D. J. and Hornby, W. E., The Iramobilization of Enzymes on
Nylon Structures and their Use in Automated Analysis, Biochem. J.
129:255-262 (1972) and Daka, N. J. and Laidler, Flow kinetics of
lactate dehydrogenase chemically attached to nylon tubing, K. J., Can.
J. Biochem. 56:774-779 (1978). This process will release primary amines
and carboxyls. The primary amine group can be used directly, or
succinimidyl 4 (p-maleimidophenyl) butyrate (SMBP) can be coupled to
the amine function leaving free the maleimide to couple with a
sulfhydryl on several of the photolytic linkers 18 described below and
acting as an extender 22. If needed, the carboxyl released can also be
converted to an amine by first protecting the amines with BOC groups
and then coupling a diamine to the carboxyl by means of carbonyl
diimidazole (CDI)." The polymeric material 14, and/or the container 12,
may comprise or consist essentially of nylon.
[0513] As is also disclosed in U.S. Pat. No. 5,470,307,
"Polyester (Dacron.RTM.) can be functionalized using 0.01 N NaOH in 10%
ethanol to release hydroxyl and carboxyl groups in the manner described
by Blassberger, D. et al, Chemically Modified Polyesters as Supports
for Enzyme Iramobilization: Isocyanide, Acylhydrazine, and Aminoaryl
derivatives of Poly(ethylene Terephthalate), Biotechnol. and Bioeng.
20:309-315 (1978). A diamine is added directly to the etched surface
using CDI and then reacted with SMBP to yield the same maleimide
reacting group to accept the photolytic linker 18." The polymeric
material 14, and/or the container 12, may comprise or consist
essentially of polyester."
[0514] As is also disclosed in U.S. Pat. No. 5,470,307,
"Polystyrene can be modified many ways, however perhaps the most useful
process is chloromethylation, as originally described by Merrifield, R.
B., Solid Phase Synthesis. I. The Synthesis of a Tetrapeptide, J. Am.
Chem Soc. 85:2149-2154 (1963), and later discussed by Atherton, E. and
Sheppard, R. C., Solid Phase Peptide Synthesis: A Practical Approach,
pp. 13-23, (IRL Press 1989). The chlorine can be modified to an amine
by reaction with anhydrous ammonia." The polymeric material may be
comprised of or consist essentially of polystyrene.
[0515] As is also disclosed in U.S. Pat. No. 5,470,307,
"Polyolefins (polypropylene or polyethylene) require different
approaches because they contain primarily a carbon backbone offering no
native functional groups. One suitable approach is to add carboxyls to
the surface by oxidizing with chromic acid followed by nitric acid as
described by Ngo, T. T. et al., Kinetics of acetylcholinesterase
immobilized on polyethylene tubing, Can. J. Biochem. 57:1200-1203
(1979). These carboxyls are then converted to amines by reacting
successively with thionyl chloride and ethylene diamine. The surface is
then reacted with SMBP to produce a maleimide that will react with the
sulfhydryl on the photolytic linker 18." The polymeric material may be
comprised of or consist essentially of polyolefin material.
[0516] As is also disclosed in U.S. Pat. No. 5,470,307, "A more
direct method is to react the polyolefin surfaces with benzophenone
4-maleimide as described by Odom, O. W. et al, Relaxation Time,
Interthiol Distance, and Mechanism of Action of Ribosomal Protein S1,
Arch. Biochem Biophys. 230:178-193 (1984), to produce the required
group for the sulfhydryl addition to the photolytic linker 18. The
benzophenone then links to the polyolefin through exposure to
ultraviolet (uv) light. Other methods to derivitize the polyolefin
surface include the use of radio frequency glow discharge (RFGD)--also
known as plasma discharge--in several different manners to produce an
in-depth coating to provide functional groups as well as increasing the
effective surface area. Polyethylene oxide (PEO) can be crosslinked to
the surface, or polyethylene glycol (PEG) can also be used and the mesh
varied by the size of the PEO or PEG. This is discussed more fully by
Sheu, M. S., et al., A glow discharge treatment to immobilize
poly(ethylene oxide)/poly(propylene oxide) surfactants for wettable and
non-fouling biomaterials, J. Adhes. Sci. Tech., 6:995-1009 (1992) and
Yasuda, H., Plasma Polymerization, (Academic Press, Inc. 1985). Exposed
hydroxyls can be activated by tresylation, also known as trifluoroethyl
sulfonyl chloride activation, in the manner described by Nielson, K.
and Mosbach, K., Tresyl Chloride-Activated Supports for Enzyme
Immobilization (and related articles), Meth. Enzym., 135:65-170 (1987).
The function can be converted to amines by addition of ethylene diamine
or other aliphatic diamines, and then the usual addition of SMBP will
give the required maleimide. Another suitable method is to use RFGD to
polymerize acrylic acid or other monomers on the surface of the
polyolefin. This surface consisting of carboxyls and other carbonyls is
derivitizable with CDI and a diamine to give an amine surface which
then can react with SMBP."
[0517] Referring again to the process described in U.S. Pat.
No. 5,470,307, photolytic linkers can be conjugated to the functional
groups on substrate layers to form linker-agent complexes. As is
disclosed in columns 13-14 of such patent, "Once a particular
functionality for the substrate layer 16 has been determined, the
appropriate strategy for coupling the photolytic linker 18 can be
selected and employed. Several such strategies are set out in the
examples which follow. As with selecting a method to expose a
functional group on the surface 14 of the substrate layer 16, it is
understood that selection of the appropriate strategy for coupling the
photolytic linker 18 will depend upon various considerations including
the chemical functionality of the substrate layer 16, the particular
therapeutic agent 20 to be used, the chemical and physical factors
affecting the rate and equilibrium of the particular photolytic release
mechanism, the need to minimize any deleterious side-effects that might
result (such as the production of antagonistic or harmful chemical
biproducts, secondary chemical reactions with adjunct medical
instruments including other portions of the catheter 10, unclean
leaving groups or other impurities), and the solubility of the material
used to fabricate the catheter body 12 or substrate layer 16 in various
solvents. More limited strategies are available for the coupling of a
2-nitrophenyl photolytic linker 18. If the active site is 1-ethyl
hydrazine used in most caging applications, then the complementary
functionality on the therapeutic agent 20 will be a carboxyl, hydroxyl,
or phosphate available on many pharmaceutical drugs. If a bromomethyl
group is built into the photolytic linker 18, it can accept either a
carboxyl or one of many other functional groups, or be converted to an
amine which can then be further derivitized. In such a case, the
leaving group might not be clean and care must be taken when adopting
this strategy for a particular anti-mitotic compound 20. Other
strategies include building in an oxycarbonyl in the 1-ethyl position,
which can form an urethane with an amine in the anti-mitotic compound
20. In this case, the photolytic process evolves CO2."
[0518] Referring again to U.S. Pat. No. 5,470,307, after the
photolytic linker construct has been prepared, it may be contacted with
a coherent laser light source to release the therapeutic agent. Thus,
as is disclosed in column 9 of U.S. Pat. No. 5,470,307, "use of a
coherent laser light source 26 will be preferable in many applications
because the use of one or more discrete wavelengths of light energy
that can be tuned or adjusted to the particular photolytic reaction
occurring in the photolytic linker 18 will necessitate only the minimum
power (wattage) level necessary to accomplish a desired release of the
anti-mitotic compound 20. As discussed above, coherent or laser light
sources 26 are currently used in a variety of medical procedures
including diagnostic and interventional treatment, and the wide
availability of laser sources 26 and the potential for redundant use of
the same laser source 26 in photolytic release of the therapeutic agent
20 as well as related procedures provides a significant advantage. In
addition, multiple releases of different therapeutic agents 20 or
multiple-step reactions can be accomplished using coherent light of
different wavelengths, intermediate linkages to dye filters may be
utilized to screen out or block transmission of light energy at unused
or antagonistic wavelengths (particularly cytotoxic or cytogenic
wavelengths), and secondary emitters may be utilized to optimize the
light energy at the principle wavelength of the laser source 26. In
other applications, it may be suitable to use a light source 26 such as
a flash lamp operatively connected to the portion of the body 12 of the
catheter 10 on which the substrate 16, photolytic linker layer 18, and
anti-mitotic compound 20 are disposed. One example would be a mercury
flash lamp capable of producing long-wave ultra-violet (uv) radiation
within or across the 300-400 nanometer wavelength spectrum. When using
either a coherent laser light source 26 or an alternate source 26 such
as a flash lamp, it is generally preferred that the light energy be
transmitted through at least a portion of the body 12 of the catheter
10 such that the light energy traverses a path through the substrate
layer 16 to the photolytic linker layer 18 in order to maximize the
proportion of light energy transmitted to the photolytic linker layer
18 and provide the greatest uniformity and reproducibility in the
amount of light energy (photons) reaching the photolytic linker layer
18 from a specified direction and nature. Optimal uniformity and
reproducibility in exposure of the photolyric linker layer 18 permits
advanced techniques such as variable release of the anti-mitotic
compound 20 dependent upon the controlled quantity of light energy
incident on the substrate layer 16 and photolytic linker layer 18."
[0519] As is also disclosed in U.S. Pat. No. 5,470,307, "The
art pertaining to the transmission of light energy through fiber optic
conduits 28 or other suitable transmission or production means to the
remote biophysical site is extensively developed. For a fiber optic
device, the fiber optic conduit 28 material must be selected to
accommodate the wavelengths needed to achieve release of the
anti-mitotic compound 20 which will for almost all applications be
within the range of 280-400 nanometers. Suitable fiber optic materials,
connections, and light energy sources 26 may be selected from those
currently available and utilized within the biomedical field. While
fiber optic conduit 28 materials may be selected to optimize
transmission of light energy at certain selected wavelengths for
desired application, the construction of a catheter 10 including fiber
optic conduit 28 materials capable of adequate transmission throughout
the range of the range of 280-400 nanometers is preferred, since this
catheter 10 would be usable with the full compliment of photolytic
release mechanisms and therapeutic agents 10. Fabrication of the
catheter 10 will therefore depend more upon considerations involving
the biomedical application or procedure by which the catheter 10 will
be introduced or implanted in the patient, and any adjunct capabilities
which the catheter 10 must possess."
[0520] By way of yet further illustration, and referring to
U.S. Pat. No. 5,599,352 (the entire disclosure of which is hereby
incorporated by reference into this specification), the polymeric
material can comprise fibrin. As is disclosed in column 4 of such
patent, "The present invention provides a stent comprising fibrin. The
term "fibrin" herein means the naturally occurring polymer of
fibrinogen that arises during blood coagulation. Blood coagulation
generally requires the participation of several plasma protein
coagulation factors: factors XII, XI, IX, X, VIII, VII, V, XIII,
prothrombin, and fibrinogen, in addition to tissue factor (factor III),
kallikrein, high molecular weight kininogen, Ca+2, and phospholipid.
The final event is the formation of an insoluble, cross-linked polymer,
fibrin, generated by the action of thrombin on fibrinogen. Fibrinogen
has three pairs of polypeptide chains (ALPHA 2-BETA 2-GAMMA 2)
covalently linked by disulfide bonds with a total molecular weight of
about 340,000. Fibrinogen is converted to fibrin through proteolysis by
thrombin. An activation peptide, fibrinopeptide A (human) is cleaved
from the amino-terminus of each ALPHA chain; fibrinopeptide B (human)
from the amino-terminus of each BETA chain. The resulting monomer
spontaneously polymerizes to a fibrin gel. Further stabilization of the
fibrin polymer to an insoluble, mechanically strong form, requires
cross-linking by factor XIII. Factor XIII is converted to XIIIa by
thrombin in the presence of Ca+2. XIIIa cross-links the GAMMA chains of
fibrin by transglutaminase activity, forming EPSILON-(GAMMA-glutamyl)
lysine cross-links. The ALPHA chains of fibrin also may be secondarily
cross-linked by transamidation."
[0521] As is also disclosed in U.S. Pat. No. 5,599,352, "Since
fibrin blood clots are naturally subject to fibrinolysis as part of the
body's repair mechanism, implanted fibrin can be rapidly biodegraded.
Plasminogen is a circulating plasma protein that is adsorbed onto the
surface of the fibrin polymer. The adsorbed plasminogen is converted to
plasmin by plasminogen activator released from the vascular
endothelium. The plasmin will then break down the fibrin into a
collection of soluble peptide fragments."
[0522] As is also disclosed in U.S. Pat. No. 5,599,352,
"Methods for making fibrin and forming it into implantable devices are
well known as set forth in the following patents and published
applications which are hereby incorporated by reference. In U.S. Pat.
No. 4,548,736 issued to Muller et al., fibrin is clotted by contacting
fibrinogen with a fibrinogen-coagulating protein such as thrombin,
reptilase or ancrod. Preferably, the fibrin in the fibrin-containing
stent of the present invention has Factor XIII and calcium present
during clotting, as described in U.S. Pat. No. 3,523,807 issued to
Gerendas, or as described in published European Patent Application
0366564, in order to improve the mechanical properties and biostability
of the implanted device. Also preferably, the fibrinogen and thrombin
used to make fibrin in the present invention are from the same animal
or human species as that in which the stent of the present invention
will be implanted in order to avoid cross-species immune reactions. The
resulting fibrin can also be subjected to heat treatment at about
150.degree. C. for 2 hours in order to reduce or eliminate
antigenicity. In the Muller patent, the fibrin product is in the form
of a fine fibrin film produced by casting the combined fibrinogen and
thrombin in a film and then removing moisture from the film osmotically
through a moisture permeable membrane. In the European Patent
Application 0366564, a substrate (preferably having high porosity or
high affinity for either thrombin or fibrinogen) is contacted with a
fibrinogen solution and with a thrombin solution. The result is a
fibrin layer formed by polymerization of fibrinogen on the surface of
the device. Multiple layers of fibrin applied by this method could
provide a fibrin layer of any desired thickness. Or, as in the Gerendas
patent, the fibrin can first be clotted and then ground into a powder
which is mixed with water and stamped into a desired shape in a heated
mold. Increased stability can also be achieved in the shaped fibrin by
contacting the fibrin with a fixing agent such as glutaraldehyde or
formaldehyde. These and other methods known by those skilled in the art
for making and forming fibrin may be used in the present invention."
[0523] As is also disclosed in U.S. Pat. No. 5,599,352,
"Preferably, the fibrinogen used to make the fibrin is a bacteria-free
and virus-free fibrinogen such as that described in U.S. Pat. No.
4,540,573 to Neurath et al which is hereby incorporated by reference.
The fibrinogen is used in solution with a concentration between about
10 and 50 mg/ml and with a pH of about 5.8-9.0 and with an ionic
strength of about 0.05 to 0.45. The fibrinogen solution also typically
contains proteins and enzymes such as albumin, fibronectin (0-300 .mu.g
per ml fibrinogen), Factor XIII (0-20 .mu.g per ml fibrinogen),
plasminogen (0-210 .mu.g per ml fibrinogen), antiplasmin (0-61 .mu.g
per ml fibrinogen) and Antithrombin III (0-150 .mu.g per ml
fibrinogen). The thrombin solution added to make the fibrin is
typically at a concentration of 1 to 120 NIH units/ml with a preferred
concentration of calcium ions between about 0.02 and 0.2M."
[0524] As is also disclosed in U.S. Pat. No. 5,599,352,
"Polymeric materials can also be intermixed in a blend or co-polymer
with the fibrin to produce a material with the desired properties of
fibrin with improved structural strength. For example, the polyurethane
material described in the article by Soldani et at., "Bioartificial
Polymeric Materials Obtained from Blends of Synthetic Polymers with
Fibrin and Collagen" International Journal of Artificial Organs, Vol.
14, No. 5, 1991, which is incorporated herein by reference, could be
sprayed onto a suitable stent structure. Suitable polymers could also
be biodegradable polymers such as polyphosphate ester,
polyhydroxybutyrate valerate, polyhydroxybutyrate-co-hydroxyvalerate
and the like . . . " The polymeric material 14 may be, e.g., a blend of
fibrin and another polymeric material.
[0525] As is also disclosed in U.S. Pat. No. 5,599,352, "The
shape for the fibrin can be provided by molding processes. For example,
the mixture can be formed into a stent having essentially the same
shape as the stent shown in U.S. Pat. No. 4,886,062 issued to Wiktor.
Unlike the method for making the stent disclosed in Wiktor which is
wound from a wire, the stent made with fibrin can be directly molded
into the desired open-ended tubular shape."
[0526] As is also disclosed in U.S. Pat. No. 5,599,352, "In
U.S. Pat. No. 4,548,736 issued to Muller et al., a dense fibrin
composition is disclosed which can be a bioabsorbable matrix for
delivery of drugs to a patient. Such a fibrin composition can also be
used in the present invention by incorporating a drug or other
therapeutic substance useful in diagnosis or treatment of body lumens
to the fibrin provided on the stent. The drug, fibrin and stent can
then be delivered to the portion of the body lumen to be treated where
the drug may elute to affect the course of restenosis in surrounding
luminal tissue. Examples of drugs that are thought to be useful in the
treatment of restenosis are disclosed in published international patent
application WO9112779 "Intraluminal Drug Eluting Prosthesis" which is
incorporated herein by reference. Therefore, useful drugs for treatment
of restenosis and drugs that can be incorporated in the fibrin and used
in the present invention can include drugs such as anticoagulant drugs,
antiplatelet drugs, antimetabolite drugs, anti-inflammatory drugs and
antimitotic drugs. Further, other vasoreactive agents such as nitric
oxide releasing agents could also be used. Such therapeutic substances
can also be microencapsulated prior to their inclusion in the fibrin.
The micro-capsules then control the rate at which the therapeutic
substance is provided to the blood stream or the body lumen. This
avoids the necessity for dehydrating the fibrin as set forth in Muller
et al., since a dense fibrin structure would not be required to contain
the therapeutic substance and limit the rate of delivery from the
fibrin. For example, a suitable fibrin matrix for drug delivery can be
made by adjusting the pH of the fibrinogen to below about pH 6.7 in a
saline solution to prevent precipitation (e.g., NACl, CaCl, etc.),
adding the microcapsules, treating the fibrinogen with thrombin and
mechanically compressing the resulting fibrin into a thin film. The
microcapsules which are suitable for use in this invention are well
known. For example, the disclosures of U.S. Pat. Nos. 4,897,268,
4,675,189; 4,542,025; 4,530,840; 4,389,330; 4,622,244; 4,464,317; and
4,943,449 could be used and are incorporated herein by reference.
Alternatively, in a method similar to that disclosed in U.S. Pat. No.
4,548,736 issued to Muller et al., a dense fibrin composition suitable
for drug delivery can be made without the use of microcapsules by
adding the drug directly to the fibrin followed by compression of the
fibrin into a sufficiently dense matrix that a desired elution rate for
the drug is achieved. In yet another method for incorporating drugs
which allows the drug to elute at a controlled rate, a solution which
includes a solvent, a polymer dissolved in the solvent and a
therapeutic drug dispersed in the solvent is